BGIOSIBCE026930 (Oryza indica)
YTH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF04146 (YTH) IPR007275 BGIOSIBCE026930 T61947_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
BGIOSIBCE026930 YTH 413 503

Links

Other YTH family RBPs
Other Oryza indica RBPs

198 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
LOC_Os08g12760 Oryza sativa LOC_Os08g12760 N 1.000
SB07G006330 Sorghum bicolor Sb07g006330 N 0.967
GRMZM2G442195 Zea mays GRMZM2G442195 N 0.967
BRADI3G18190 Brachypodium distachyon BRADI3G18190 N 0.956
LOC_Os04g51940 Oryza sativa LOC_Os04g51940 N 0.956
BGIOSIBCE016517 Oryza indica BGIOSIBCE016517 N 0.912
SB07G024500 Sorghum bicolor Sb07g024500 N 0.890
GRMZM2G025488 Zea mays GRMZM2G025488 N 0.879
MDP0000287088 Malus x domestica MDP0000287088 N 0.868
LOC_Os08g44200 Oryza sativa LOC_Os08g44200 N 0.868
ppa002483m Prunus persica ppa002483m N 0.868
ppa002588m Prunus persica ppa002588m N 0.868
PK17832.1 Cannabis sativa PK17832.1 N 0.868
MDP0000405927 Malus x domestica MDP0000405927 N 0.868
MDP0000617859 Malus x domestica MDP0000617859 N 0.868
BGIOSIBCE028829 Oryza indica BGIOSIBCE028829 N 0.868
MDP0000552419 Malus x domestica MDP0000552419 N 0.857
B9N5D4_POPTR Populus trichocarpa POPTR_0014s00320 N 0.857
cassava1918.valid.m1 Manihot esculenta cassava1918.valid.m1 N 0.857
cassava1916.valid.m1 Manihot esculenta cassava1916.valid.m1 N 0.857
cassava1917.valid.m1 Manihot esculenta cassava1917.valid.m1 N 0.857
B9HG69_POPTR Populus trichocarpa POPTR_0007s15150 N 0.857
MDP0000248088 Malus x domestica MDP0000248088 N 0.857
BRADI3G42640 Brachypodium distachyon BRADI3G42640 N 0.857
XM_002882758.1 Arabidopsis lyrata fgenesh2_kg.3__1376__AT3G13060.2 N 0.857
ECT5 Arabidopsis thaliana AT3G13060-TAIR-G N 0.857
cassava12061.valid.m1 Manihot esculenta cassava12061.valid.m1 N 0.846
Medtr4g163280 Medicago truncatula Medtr4g163280 N 0.846
Glyma08g24210.1 Glycine max Glyma08g24210.1 N 0.846
Glyma07g00280.1 Glycine max Glyma07g00280.1 N 0.846
GSVIVG00029460001 Vitis vinifera GSVIVG00029460001 N 0.846
cassava6538.valid.m1 Manihot esculenta cassava6538.valid.m1 N 0.846
SB06G027960 Sorghum bicolor Sb06g027960 N 0.835
29929.m004643 Ricinus communis 29929.m004643 N 0.835
B9GMK5_POPTR Populus trichocarpa POPTR_0001s13870 N 0.824
ppa003664m Prunus persica ppa003664m N 0.824
Glyma17g04270.1 Glycine max Glyma17g04270.1 N 0.813
PDK_20s1308332g001 Phoenix dactylifera PDK_20s1308332g001 N 0.813
chr3.CM0292.380.nc Lotus japonicus chr3.CM0292.380.nc N 0.813
GRMZM2G126338 Zea mays GRMZM2G126338 N 0.813
BRADI4G02150 Brachypodium distachyon BRADI4G02150 N 0.813
SB01G008170 Sorghum bicolor Sb01g008170 N 0.813
GSVIVG00010494001 Vitis vinifera GSVIVG00010494001 N 0.813
PDK_20s1441394g001 Phoenix dactylifera PDK_20s1441394g001 N 0.813
GSVIVG00017649001 Vitis vinifera GSVIVG00017649001 N 0.813
mgf019821m Mimulus guttatus mgf019821m N 0.802
gw1.181.55.1 Physcomitrella patens gw1.181.55.1 N 0.802
LOC_Os03g53670 Oryza sativa LOC_Os03g53670 N 0.802
BRADI1G05970 Brachypodium distachyon BRADI1G05970 N 0.802
MDP0000171737 Malus x domestica MDP0000171737 N 0.802
cassava42993.valid.m1 Manihot esculenta cassava42993.valid.m1 N 0.802
PK01736.1 Cannabis sativa PK01736.1 N 0.802
cassava42992.valid.m1 Manihot esculenta cassava42992.valid.m1 N 0.802
MDP0000132385 Malus x domestica MDP0000132385 N 0.791
chr6.LjT36O06.80.nd Lotus japonicus chr6.LjT36O06.80.nd N 0.791
MDP0000306387 Malus x domestica MDP0000306387 N 0.791
cassava17772.valid.m1 Manihot esculenta cassava17772.valid.m1 N 0.791
cassava17771.valid.m1 Manihot esculenta cassava17771.valid.m1 N 0.791
GSVIVG00036696001 Vitis vinifera GSVIVG00036696001 N 0.791
mgf009938m Mimulus guttatus mgf009938m N 0.791
Cucsa.142200 Cucumis sativus Cucsa.142200 N 0.791
PK23104.1 Cannabis sativa PK23104.1 N 0.791
MDP0000286471 Malus x domestica MDP0000286471 N 0.791
Glyma07g36110.1 Glycine max Glyma07g36110.1 N 0.791
MDP0000231231 Malus x domestica MDP0000231231 N 0.791
ppa018635m Prunus persica ppa018635m N 0.791
mgf013853m Mimulus guttatus mgf013853m N 0.791
Medtr2g036990 Medicago truncatula Medtr2g036990 N 0.791
PK02315.1 Cannabis sativa PK02315.1 N 0.791
Cucsa.356240 Cucumis sativus Cucsa.356240 N 0.780
Glyma05g30020.1 Glycine max Glyma05g30020.1 N 0.780
LjSGA_032005.1 Lotus japonicus LjSGA_032005.1 N 0.780
Medtr2g085380 Medicago truncatula Medtr2g085380 N 0.780
Medtr8g134440 Medicago truncatula Medtr8g134440 N 0.780
PDK_20s1352821g002 Phoenix dactylifera PDK_20s1352821g002 N 0.780
ECT8 Arabidopsis thaliana AT1G79270-TAIR-G N 0.780
GRMZM2G330019 Zea mays GRMZM2G330019 N 0.780
GRMZM2G076062 Zea mays GRMZM2G076062 N 0.780
Glyma15g41960.1 Glycine max Glyma15g41960.1 N 0.780
gw1.1.157.1 Selaginella moellendorfii gw1.1.157.1 N 0.780
gw1.198.66.1 Physcomitrella patens gw1.198.66.1 N 0.780
Glyma08g17240.1 Glycine max Glyma08g17240.1 N 0.780
Cucsa.135220 Cucumis sativus Cucsa.135220 N 0.780
cassava20494.m1 Manihot esculenta cassava20494.m1 N 0.780
cassava18205.valid.m1 Manihot esculenta cassava18205.valid.m1 N 0.780
cassava20495.m1 Manihot esculenta cassava20495.m1 N 0.780
29889.m003364 Ricinus communis 29889.m003364 N 0.780
29890.m000285 Ricinus communis 29890.m000285 N 0.780
Sb01g046550 Sorghum bicolor Sb01g046550 N 0.780
cassava18204.valid.m1 Manihot esculenta cassava18204.valid.m1 N 0.780
GSVIVG00025494001 Vitis vinifera GSVIVG00025494001 N 0.780
29955.m001158 Ricinus communis 29955.m001158 N 0.780
cassava18203.valid.m1 Manihot esculenta cassava18203.valid.m1 N 0.780
cassava12387.valid.m1 Manihot esculenta cassava12387.valid.m1 N 0.769
cassava12388.valid.m1 Manihot esculenta cassava12388.valid.m1 N 0.769
mgf017987m Mimulus guttatus mgf017987m N 0.769
29950.m001140 Ricinus communis 29950.m001140 N 0.769
cassava12386.valid.m1 Manihot esculenta cassava12386.valid.m1 N 0.769
GRMZM2G144726 Zea mays GRMZM2G144726 N 0.769
XM_002887730.1 Arabidopsis lyrata fgenesh2_kg.2__2224__AT1G79270.1 N 0.769
B9HI18_POPTR Populus trichocarpa POPTR_0008s08030 N 0.769
B9GXX7_POPTR Populus trichocarpa POPTR_0003s20840 N 0.769
LOC_Os01g48790 Oryza sativa LOC_Os01g48790 N 0.769
PK05579.1 Cannabis sativa PK05579.1 N 0.769
cassava35657.valid.m1 Manihot esculenta cassava35657.valid.m1 N 0.769
BRADI2G46590 Brachypodium distachyon BRADI2G46590 N 0.769
GRMZM2G363789 Zea mays GRMZM2G363789 N 0.769
SB02G003990 Sorghum bicolor Sb02g003990 N 0.769
cassava12389.valid.m1 Manihot esculenta cassava12389.valid.m1 N 0.769
mgf013935m Mimulus guttatus mgf013935m N 0.769
cassava35663.valid.m1 Manihot esculenta cassava35663.valid.m1 N 0.769
cassava35665.valid.m1 Manihot esculenta cassava35665.valid.m1 N 0.769
cassava35666.valid.m1 Manihot esculenta cassava35666.valid.m1 N 0.769
cassava35667.valid.m1 Manihot esculenta cassava35667.valid.m1 N 0.769
cassava35662.valid.m1 Manihot esculenta cassava35662.valid.m1 N 0.769
cassava35661.valid.m1 Manihot esculenta cassava35661.valid.m1 N 0.769
cassava35658.valid.m1 Manihot esculenta cassava35658.valid.m1 N 0.769
cassava35659.valid.m1 Manihot esculenta cassava35659.valid.m1 N 0.769
cassava35660.valid.m1 Manihot esculenta cassava35660.valid.m1 N 0.769
cassava38866.m1 Manihot esculenta cassava38866.m1 N 0.769
cassava38867.m1 Manihot esculenta cassava38867.m1 N 0.769
Glyma08g13130.1 Glycine max Glyma08g13130.1 N 0.769
BGIOSIBCE003171 Oryza indica BGIOSIBCE003171 N 0.769
Glyma15g14490.1 Glycine max Glyma15g14490.1 N 0.769
Glyma09g03590.1 Glycine max Glyma09g03590.1 N 0.758
XM_002894050.1 Arabidopsis lyrata fgenesh2_kg.1__3903__AT1G48110.2 N 0.758
mgf014143m Mimulus guttatus mgf014143m N 0.758
A9PED2_POPTR Populus trichocarpa POPTR_0019s04990 N 0.758
mgf001716m Mimulus guttatus mgf001716m N 0.758
B9N817_POPTR Populus trichocarpa POPTR_0018s14670 N 0.758
XM_002884922.1 Arabidopsis lyrata fgenesh2_kg.3__1434__AT3G13460.1 N 0.758
B9HII9_POPTR Populus trichocarpa POPTR_0008s09960 N 0.758
MDP0000124048 Malus x domestica MDP0000124048 N 0.758
B9HX84_POPTR Populus trichocarpa POPTR_0010s16210 N 0.758
B9HYD4_POPTR Populus trichocarpa POPTR_0010s18300 N 0.758
ECT7 Arabidopsis thaliana AT1G48110-TAIR-G N 0.758
SB03G031190 Sorghum bicolor Sb03g031190 N 0.758
cassava30727.valid.m1 Manihot esculenta cassava30727.valid.m1 N 0.758
cassava30728.valid.m1 Manihot esculenta cassava30728.valid.m1 N 0.758
mgf019846m Mimulus guttatus mgf019846m N 0.758
GSVIVG00033395001 Vitis vinifera GSVIVG00033395001 N 0.758
BRADI1G74560 Brachypodium distachyon BRADI1G74560 N 0.758
MDP0000488588 Malus x domestica MDP0000488588 N 0.758
MDP0000718677 Malus x domestica MDP0000718677 N 0.758
PK23716.1 Cannabis sativa PK23716.1 N 0.758
ECT2 Arabidopsis thaliana AT3G13460-TAIR-G N 0.758
GRMZM2G169116 Zea mays GRMZM2G169116 N 0.758
mgf014829m Mimulus guttatus mgf014829m N 0.758
cassava30729.valid.m1 Manihot esculenta cassava30729.valid.m1 N 0.758
mgf015583m Mimulus guttatus mgf015583m N 0.758
ECT4 Arabidopsis thaliana AT1G55500-TAIR-G N 0.747
GSVIVG00032236001 Vitis vinifera GSVIVG00032236001 N 0.747
XM_002891791.1 Arabidopsis lyrata fgenesh1_pg.C_scaffold_1004195 N 0.747
BGIOSIBCE023845 Oryza indica BGIOSIBCE023845 N 0.747
BGIOSIBCE009738 Oryza indica BGIOSIBCE009738 N 0.747
XM_002885156.1 Arabidopsis lyrata Al_scaffold_0003_1823 N 0.747
PK26094.1 Cannabis sativa PK26094.1 N 0.747
ECT6 Arabidopsis thaliana AT3G17330-TAIR-G N 0.747
PDK_20s1631851g001 Phoenix dactylifera PDK_20s1631851g001 N 0.747
SB01G005500 Sorghum bicolor Sb01g005500 N 0.747
MDP0000129009 Malus x domestica MDP0000129009 N 0.747
Medtr7g100450 Medicago truncatula Medtr7g100450 N 0.747
GRMZM2G127780 Zea mays GRMZM2G127780 N 0.747
cassava22612.valid.m1 Manihot esculenta cassava22612.valid.m1 N 0.747
B9HBC4_POPTR Populus trichocarpa POPTR_0006s07970 N 0.747
Medtr4g136900 Medicago truncatula Medtr4g136900 N 0.747
MDP0000256033 Malus x domestica MDP0000256033 N 0.747
LOC_Os03g06240 Oryza sativa LOC_Os03g06240 N 0.747
LOC_Os07g07490 Oryza sativa LOC_Os07g07490 N 0.747
ECT1 Arabidopsis thaliana AT3G03950-TAIR-G N 0.736
Glyma16g04590.1 Glycine max Glyma16g04590.1 N 0.736
Glyma19g28710.1 Glycine max Glyma19g28710.1 N 0.736
ECT9 Arabidopsis thaliana AT1G27960-TAIR-G N 0.736
ECT10 Arabidopsis thaliana AT5G58190-TAIR-G N 0.736
BGIOSIBCE010884 Oryza indica BGIOSIBCE010884 N 0.736
ECT3 Arabidopsis thaliana AT5G61020-TAIR-G N 0.736
29765.m000746 Ricinus communis 29765.m000746 N 0.736
BRADI1G64100 Brachypodium distachyon BRADI1G64100 N 0.736
LOC_Os03g20180 Oryza sativa LOC_Os03g20180 N 0.736
XM_002893450.1 Arabidopsis lyrata fgenesh2_kg.1__2951__AT1G27960.1 N 0.736
XM_002864508.1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_8001450 N 0.736
XM_002866364.1 Arabidopsis lyrata fgenesh2_kg.8__2071__AT5G61020.1 N 0.736
ppa002677m Prunus persica ppa002677m N 0.736
Medtr6g030800 Medicago truncatula Medtr6g030800 N 0.725
XM_002882275.1 Arabidopsis lyrata fgenesh2_kg.3__349__AT3G03950.3 N 0.725
BGIOSIBCE028833 Oryza indica BGIOSIBCE028833 N 0.725
ppa003557m Prunus persica ppa003557m N 0.725
Medtr6g030790 Medicago truncatula Medtr6g030790 N 0.725
MDP0000488248 Malus x domestica MDP0000488248 N 0.725
cassava13323.valid.m1 Manihot esculenta cassava13323.valid.m1 N 0.714
Glyma02g07920.1 Glycine max Glyma02g07920.1 N 0.714
cassava13322.valid.m1 Manihot esculenta cassava13322.valid.m1 N 0.714
cassava14932.m1 Manihot esculenta cassava14932.m1 N 0.714
SB09G000580 Sorghum bicolor Sb09g000580 N 0.714
cassava13324.valid.m1 Manihot esculenta cassava13324.valid.m1 N 0.714
GRMZM2G303312 Zea mays GRMZM2G303312 N 0.703
MDP0000189157 Malus x domestica MDP0000189157 N 0.703
B9N0D5_POPTR Populus trichocarpa POPTR_0004s23250 N 0.703