PK01736.1 (Cannabis sativa)
YTH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF04146 (YTH) IPR007275 PK01736.1 T61905_0.6 Cannabis sativa genome (2012-Feb-20)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
PK01736.1 YTH 363 453

Links

Other YTH family RBPs
Other Cannabis sativa RBPs

121 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
GSVIVG00029460001 Vitis vinifera GSVIVG00029460001 N 0.890
B9HG69_POPTR Populus trichocarpa POPTR_0007s15150 N 0.890
GSVIVG00010494001 Vitis vinifera GSVIVG00010494001 N 0.890
B9N5D4_POPTR Populus trichocarpa POPTR_0014s00320 N 0.890
ppa002588m Prunus persica ppa002588m N 0.879
XM_002882758.1 Arabidopsis lyrata fgenesh2_kg.3__1376__AT3G13060.2 N 0.879
cassava1918.valid.m1 Manihot esculenta cassava1918.valid.m1 N 0.879
ppa002483m Prunus persica ppa002483m N 0.879
ECT5 Arabidopsis thaliana AT3G13060-TAIR-G N 0.879
29929.m004643 Ricinus communis 29929.m004643 N 0.879
cassava6538.valid.m1 Manihot esculenta cassava6538.valid.m1 N 0.879
cassava1917.valid.m1 Manihot esculenta cassava1917.valid.m1 N 0.879
cassava12061.valid.m1 Manihot esculenta cassava12061.valid.m1 N 0.879
cassava1916.valid.m1 Manihot esculenta cassava1916.valid.m1 N 0.879
Medtr4g163280 Medicago truncatula Medtr4g163280 N 0.868
PK17832.1 Cannabis sativa PK17832.1 N 0.868
MDP0000287088 Malus x domestica MDP0000287088 N 0.868
B9GMK5_POPTR Populus trichocarpa POPTR_0001s13870 N 0.868
MDP0000405927 Malus x domestica MDP0000405927 N 0.868
MDP0000617859 Malus x domestica MDP0000617859 N 0.868
MDP0000552419 Malus x domestica MDP0000552419 N 0.857
MDP0000248088 Malus x domestica MDP0000248088 N 0.857
chr3.CM0292.380.nc Lotus japonicus chr3.CM0292.380.nc N 0.846
Glyma07g00280.1 Glycine max Glyma07g00280.1 N 0.846
Glyma08g24210.1 Glycine max Glyma08g24210.1 N 0.846
SB07G024500 Sorghum bicolor Sb07g024500 N 0.835
GRMZM2G025488 Zea mays GRMZM2G025488 N 0.835
LOC_Os08g44200 Oryza sativa LOC_Os08g44200 N 0.824
BGIOSIBCE028829 Oryza indica BGIOSIBCE028829 N 0.824
BRADI3G42640 Brachypodium distachyon BRADI3G42640 N 0.813
BGIOSIBCE026930 Oryza indica BGIOSIBCE026930 N 0.802
LOC_Os04g51940 Oryza sativa LOC_Os04g51940 N 0.802
LOC_Os08g12760 Oryza sativa LOC_Os08g12760 N 0.802
GRMZM2G442195 Zea mays GRMZM2G442195 N 0.791
SB07G006330 Sorghum bicolor Sb07g006330 N 0.791
mgf019821m Mimulus guttatus mgf019821m N 0.780
BRADI3G18190 Brachypodium distachyon BRADI3G18190 N 0.780
29955.m001158 Ricinus communis 29955.m001158 N 0.780
29890.m000285 Ricinus communis 29890.m000285 N 0.769
gw1.181.55.1 Physcomitrella patens gw1.181.55.1 N 0.769
B9N817_POPTR Populus trichocarpa POPTR_0018s14670 N 0.769
GSVIVG00036696001 Vitis vinifera GSVIVG00036696001 N 0.769
BGIOSIBCE016517 Oryza indica BGIOSIBCE016517 N 0.769
BGIOSIBCE003171 Oryza indica BGIOSIBCE003171 N 0.769
MDP0000171737 Malus x domestica MDP0000171737 N 0.769
BRADI2G46590 Brachypodium distachyon BRADI2G46590 N 0.769
ppa003664m Prunus persica ppa003664m N 0.769
LOC_Os01g48790 Oryza sativa LOC_Os01g48790 N 0.769
B9HI18_POPTR Populus trichocarpa POPTR_0008s08030 N 0.758
Glyma08g17240.1 Glycine max Glyma08g17240.1 N 0.758
LjSGA_032005.1 Lotus japonicus LjSGA_032005.1 N 0.758
ECT8 Arabidopsis thaliana AT1G79270-TAIR-G N 0.758
PK23104.1 Cannabis sativa PK23104.1 N 0.758
ECT9 Arabidopsis thaliana AT1G27960-TAIR-G N 0.758
Medtr2g085380 Medicago truncatula Medtr2g085380 N 0.758
GRMZM2G169116 Zea mays GRMZM2G169116 N 0.758
XM_002893450.1 Arabidopsis lyrata fgenesh2_kg.1__2951__AT1G27960.1 N 0.758
Glyma15g41960.1 Glycine max Glyma15g41960.1 N 0.758
XM_002887730.1 Arabidopsis lyrata fgenesh2_kg.2__2224__AT1G79270.1 N 0.758
GRMZM2G127780 Zea mays GRMZM2G127780 N 0.758
SB03G031190 Sorghum bicolor Sb03g031190 N 0.758
MDP0000286471 Malus x domestica MDP0000286471 N 0.747
Cucsa.356240 Cucumis sativus Cucsa.356240 N 0.747
MDP0000231231 Malus x domestica MDP0000231231 N 0.747
Medtr8g134440 Medicago truncatula Medtr8g134440 N 0.747
gw1.198.66.1 Physcomitrella patens gw1.198.66.1 N 0.747
gw1.1.157.1 Selaginella moellendorfii gw1.1.157.1 N 0.747
SB06G027960 Sorghum bicolor Sb06g027960 N 0.747
GSVIVG00032236001 Vitis vinifera GSVIVG00032236001 N 0.747
Glyma15g14490.1 Glycine max Glyma15g14490.1 N 0.736
PDK_20s1352821g002 Phoenix dactylifera PDK_20s1352821g002 N 0.736
GSVIVG00017649001 Vitis vinifera GSVIVG00017649001 N 0.736
Glyma17g04270.1 Glycine max Glyma17g04270.1 N 0.736
B9HYD4_POPTR Populus trichocarpa POPTR_0010s18300 N 0.736
PDK_20s1441394g001 Phoenix dactylifera PDK_20s1441394g001 N 0.736
B9HBC4_POPTR Populus trichocarpa POPTR_0006s07970 N 0.736
29889.m003364 Ricinus communis 29889.m003364 N 0.736
cassava42992.valid.m1 Manihot esculenta cassava42992.valid.m1 N 0.736
PK05579.1 Cannabis sativa PK05579.1 N 0.736
cassava42993.valid.m1 Manihot esculenta cassava42993.valid.m1 N 0.736
GSVIVG00033395001 Vitis vinifera GSVIVG00033395001 N 0.725
ppa018635m Prunus persica ppa018635m N 0.725
ppa002677m Prunus persica ppa002677m N 0.725
chr6.LjT36O06.80.nd Lotus japonicus chr6.LjT36O06.80.nd N 0.725
Medtr2g036990 Medicago truncatula Medtr2g036990 N 0.725
B9HII9_POPTR Populus trichocarpa POPTR_0008s09960 N 0.725
PK02315.1 Cannabis sativa PK02315.1 N 0.725
cassava17771.valid.m1 Manihot esculenta cassava17771.valid.m1 N 0.725
Cucsa.135220 Cucumis sativus Cucsa.135220 N 0.725
PDK_20s1631851g001 Phoenix dactylifera PDK_20s1631851g001 N 0.725
cassava17772.valid.m1 Manihot esculenta cassava17772.valid.m1 N 0.725
MDP0000306387 Malus x domestica MDP0000306387 N 0.714
BGIOSIBCE010884 Oryza indica BGIOSIBCE010884 N 0.714
MDP0000132385 Malus x domestica MDP0000132385 N 0.714
ECT10 Arabidopsis thaliana AT5G58190-TAIR-G N 0.714
ECT1 Arabidopsis thaliana AT3G03950-TAIR-G N 0.714
BRADI1G64100 Brachypodium distachyon BRADI1G64100 N 0.714
XM_002885156.1 Arabidopsis lyrata Al_scaffold_0003_1823 N 0.714
ECT7 Arabidopsis thaliana AT1G48110-TAIR-G N 0.714
XM_002894050.1 Arabidopsis lyrata fgenesh2_kg.1__3903__AT1G48110.2 N 0.714
GRMZM2G126338 Zea mays GRMZM2G126338 N 0.714
mgf014143m Mimulus guttatus mgf014143m N 0.714
mgf017987m Mimulus guttatus mgf017987m N 0.714
LOC_Os03g20180 Oryza sativa LOC_Os03g20180 N 0.714
SB01G008170 Sorghum bicolor Sb01g008170 N 0.714
mgf015583m Mimulus guttatus mgf015583m N 0.714
XM_002864508.1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_8001450 N 0.714
Glyma07g36110.1 Glycine max Glyma07g36110.1 N 0.714
Glyma09g03590.1 Glycine max Glyma09g03590.1 N 0.714
PDK_20s1308332g001 Phoenix dactylifera PDK_20s1308332g001 N 0.703
29950.m001140 Ricinus communis 29950.m001140 N 0.703
LOC_Os03g53670 Oryza sativa LOC_Os03g53670 N 0.703
XM_002882275.1 Arabidopsis lyrata fgenesh2_kg.3__349__AT3G03950.3 N 0.703
BRADI4G02150 Brachypodium distachyon BRADI4G02150 N 0.703
ECT6 Arabidopsis thaliana AT3G17330-TAIR-G N 0.703
B9GXX7_POPTR Populus trichocarpa POPTR_0003s20840 N 0.703
B9HX84_POPTR Populus trichocarpa POPTR_0010s16210 N 0.703
cassava22612.valid.m1 Manihot esculenta cassava22612.valid.m1 N 0.703
SB02G003990 Sorghum bicolor Sb02g003990 N 0.703
A9PED2_POPTR Populus trichocarpa POPTR_0019s04990 N 0.703
GRMZM2G144726 Zea mays GRMZM2G144726 N 0.703