cassava6538.valid.m1 (Manihot esculenta)
YTH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF04146 (YTH) IPR007275 cassava6538.valid.m1 T62345_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
cassava6538.valid.m1 YTH 322 412

Links

Other YTH family RBPs
Other Manihot esculenta RBPs

179 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
cassava12061.valid.m1 Manihot esculenta cassava12061.valid.m1 N 0.978
29929.m004643 Ricinus communis 29929.m004643 N 0.967
B9N5D4_POPTR Populus trichocarpa POPTR_0014s00320 N 0.956
PK17832.1 Cannabis sativa PK17832.1 N 0.945
B9HG69_POPTR Populus trichocarpa POPTR_0007s15150 N 0.934
GSVIVG00029460001 Vitis vinifera GSVIVG00029460001 N 0.934
B9GMK5_POPTR Populus trichocarpa POPTR_0001s13870 N 0.934
ECT5 Arabidopsis thaliana AT3G13060-TAIR-G N 0.923
cassava1918.valid.m1 Manihot esculenta cassava1918.valid.m1 N 0.923
cassava1916.valid.m1 Manihot esculenta cassava1916.valid.m1 N 0.923
cassava1917.valid.m1 Manihot esculenta cassava1917.valid.m1 N 0.923
XM_002882758.1 Arabidopsis lyrata fgenesh2_kg.3__1376__AT3G13060.2 N 0.923
ppa002483m Prunus persica ppa002483m N 0.912
Glyma07g00280.1 Glycine max Glyma07g00280.1 N 0.912
ppa002588m Prunus persica ppa002588m N 0.912
GSVIVG00010494001 Vitis vinifera GSVIVG00010494001 N 0.901
Medtr4g163280 Medicago truncatula Medtr4g163280 N 0.901
MDP0000617859 Malus x domestica MDP0000617859 N 0.890
Glyma08g24210.1 Glycine max Glyma08g24210.1 N 0.890
MDP0000405927 Malus x domestica MDP0000405927 N 0.890
MDP0000287088 Malus x domestica MDP0000287088 N 0.890
chr3.CM0292.380.nc Lotus japonicus chr3.CM0292.380.nc N 0.879
MDP0000248088 Malus x domestica MDP0000248088 N 0.879
MDP0000552419 Malus x domestica MDP0000552419 N 0.879
PK01736.1 Cannabis sativa PK01736.1 N 0.879
SB07G024500 Sorghum bicolor Sb07g024500 N 0.868
GRMZM2G025488 Zea mays GRMZM2G025488 N 0.868
BGIOSIBCE028829 Oryza indica BGIOSIBCE028829 N 0.857
LOC_Os08g44200 Oryza sativa LOC_Os08g44200 N 0.857
BRADI3G42640 Brachypodium distachyon BRADI3G42640 N 0.846
LOC_Os08g12760 Oryza sativa LOC_Os08g12760 N 0.846
BGIOSIBCE026930 Oryza indica BGIOSIBCE026930 N 0.846
LOC_Os04g51940 Oryza sativa LOC_Os04g51940 N 0.835
B9N817_POPTR Populus trichocarpa POPTR_0018s14670 N 0.813
SB07G006330 Sorghum bicolor Sb07g006330 N 0.813
BRADI3G18190 Brachypodium distachyon BRADI3G18190 N 0.813
GRMZM2G442195 Zea mays GRMZM2G442195 N 0.813
29890.m000285 Ricinus communis 29890.m000285 N 0.813
BGIOSIBCE016517 Oryza indica BGIOSIBCE016517 N 0.802
GSVIVG00032236001 Vitis vinifera GSVIVG00032236001 N 0.802
mgf019821m Mimulus guttatus mgf019821m N 0.802
Glyma15g14490.1 Glycine max Glyma15g14490.1 N 0.791
Glyma08g17240.1 Glycine max Glyma08g17240.1 N 0.791
ppa018635m Prunus persica ppa018635m N 0.791
Glyma15g41960.1 Glycine max Glyma15g41960.1 N 0.791
Medtr8g134440 Medicago truncatula Medtr8g134440 N 0.791
Cucsa.356240 Cucumis sativus Cucsa.356240 N 0.791
PDK_20s1441394g001 Phoenix dactylifera PDK_20s1441394g001 N 0.780
SB06G027960 Sorghum bicolor Sb06g027960 N 0.780
GSVIVG00017649001 Vitis vinifera GSVIVG00017649001 N 0.780
gw1.181.55.1 Physcomitrella patens gw1.181.55.1 N 0.780
GSVIVG00036696001 Vitis vinifera GSVIVG00036696001 N 0.780
Glyma17g04270.1 Glycine max Glyma17g04270.1 N 0.780
PK05579.1 Cannabis sativa PK05579.1 N 0.780
ppa003664m Prunus persica ppa003664m N 0.780
B9HBC4_POPTR Populus trichocarpa POPTR_0006s07970 N 0.780
ppa002677m Prunus persica ppa002677m N 0.780
Glyma09g03590.1 Glycine max Glyma09g03590.1 N 0.780
MDP0000132385 Malus x domestica MDP0000132385 N 0.780
cassava42992.valid.m1 Manihot esculenta cassava42992.valid.m1 N 0.780
cassava42993.valid.m1 Manihot esculenta cassava42993.valid.m1 N 0.780
LjSGA_032005.1 Lotus japonicus LjSGA_032005.1 N 0.780
MDP0000306387 Malus x domestica MDP0000306387 N 0.780
MDP0000171737 Malus x domestica MDP0000171737 N 0.780
chr6.LjT36O06.80.nd Lotus japonicus chr6.LjT36O06.80.nd N 0.769
ECT9 Arabidopsis thaliana AT1G27960-TAIR-G N 0.769
BGIOSIBCE003171 Oryza indica BGIOSIBCE003171 N 0.769
BRADI2G46590 Brachypodium distachyon BRADI2G46590 N 0.769
Medtr2g036990 Medicago truncatula Medtr2g036990 N 0.769
XM_002893450.1 Arabidopsis lyrata fgenesh2_kg.1__2951__AT1G27960.1 N 0.769
Medtr2g085380 Medicago truncatula Medtr2g085380 N 0.769
gw1.198.66.1 Physcomitrella patens gw1.198.66.1 N 0.769
LOC_Os01g48790 Oryza sativa LOC_Os01g48790 N 0.769
ECT8 Arabidopsis thaliana AT1G79270-TAIR-G N 0.769
XM_002887730.1 Arabidopsis lyrata fgenesh2_kg.2__2224__AT1G79270.1 N 0.769
29889.m003364 Ricinus communis 29889.m003364 N 0.769
B9HI18_POPTR Populus trichocarpa POPTR_0008s08030 N 0.769
PK23104.1 Cannabis sativa PK23104.1 N 0.769
29955.m001158 Ricinus communis 29955.m001158 N 0.769
GRMZM2G169116 Zea mays GRMZM2G169116 N 0.758
Cucsa.135220 Cucumis sativus Cucsa.135220 N 0.758
MDP0000286471 Malus x domestica MDP0000286471 N 0.758
SB03G031190 Sorghum bicolor Sb03g031190 N 0.758
SB01G008170 Sorghum bicolor Sb01g008170 N 0.758
GRMZM2G127780 Zea mays GRMZM2G127780 N 0.758
MDP0000231231 Malus x domestica MDP0000231231 N 0.758
GRMZM2G126338 Zea mays GRMZM2G126338 N 0.758
Glyma07g36110.1 Glycine max Glyma07g36110.1 N 0.758
ECT1 Arabidopsis thaliana AT3G03950-TAIR-G N 0.758
B9HII9_POPTR Populus trichocarpa POPTR_0008s09960 N 0.758
cassava17772.valid.m1 Manihot esculenta cassava17772.valid.m1 N 0.747
XM_002882275.1 Arabidopsis lyrata fgenesh2_kg.3__349__AT3G03950.3 N 0.747
B9GXX7_POPTR Populus trichocarpa POPTR_0003s20840 N 0.747
LOC_Os03g53670 Oryza sativa LOC_Os03g53670 N 0.747
A9PED2_POPTR Populus trichocarpa POPTR_0019s04990 N 0.747
B9HYD4_POPTR Populus trichocarpa POPTR_0010s18300 N 0.747
cassava22612.valid.m1 Manihot esculenta cassava22612.valid.m1 N 0.747
LOC_Os03g20180 Oryza sativa LOC_Os03g20180 N 0.747
cassava17771.valid.m1 Manihot esculenta cassava17771.valid.m1 N 0.747
GSVIVG00033395001 Vitis vinifera GSVIVG00033395001 N 0.747
gw1.1.157.1 Selaginella moellendorfii gw1.1.157.1 N 0.747
PDK_20s1631851g001 Phoenix dactylifera PDK_20s1631851g001 N 0.747
MDP0000189157 Malus x domestica MDP0000189157 N 0.747
mgf017987m Mimulus guttatus mgf017987m N 0.747
ECT7 Arabidopsis thaliana AT1G48110-TAIR-G N 0.747
XM_002894050.1 Arabidopsis lyrata fgenesh2_kg.1__3903__AT1G48110.2 N 0.747
PDK_20s1308332g001 Phoenix dactylifera PDK_20s1308332g001 N 0.747
BGIOSIBCE010884 Oryza indica BGIOSIBCE010884 N 0.747
PDK_20s1352821g002 Phoenix dactylifera PDK_20s1352821g002 N 0.747
XM_002866364.1 Arabidopsis lyrata fgenesh2_kg.8__2071__AT5G61020.1 N 0.736
BRADI4G02150 Brachypodium distachyon BRADI4G02150 N 0.736
XM_002864508.1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_8001450 N 0.736
mgf015583m Mimulus guttatus mgf015583m N 0.736
mgf014143m Mimulus guttatus mgf014143m N 0.736
GRMZM2G144726 Zea mays GRMZM2G144726 N 0.736
XM_002885156.1 Arabidopsis lyrata Al_scaffold_0003_1823 N 0.736
SB02G003990 Sorghum bicolor Sb02g003990 N 0.736
29950.m001140 Ricinus communis 29950.m001140 N 0.736
ECT10 Arabidopsis thaliana AT5G58190-TAIR-G N 0.736
B9HX84_POPTR Populus trichocarpa POPTR_0010s16210 N 0.736
mgf013935m Mimulus guttatus mgf013935m N 0.725
MDP0000124048 Malus x domestica MDP0000124048 N 0.725
BRADI1G64100 Brachypodium distachyon BRADI1G64100 N 0.725
ECT6 Arabidopsis thaliana AT3G17330-TAIR-G N 0.725
GSVIVG00025494001 Vitis vinifera GSVIVG00025494001 N 0.725
Medtr4g136900 Medicago truncatula Medtr4g136900 N 0.725
ECT3 Arabidopsis thaliana AT5G61020-TAIR-G N 0.725
Glyma05g30020.1 Glycine max Glyma05g30020.1 N 0.714
Medtr7g100450 Medicago truncatula Medtr7g100450 N 0.714
cassava12389.valid.m1 Manihot esculenta cassava12389.valid.m1 N 0.714
Medtr6g030800 Medicago truncatula Medtr6g030800 N 0.714
Medtr6g030790 Medicago truncatula Medtr6g030790 N 0.714
cassava30727.valid.m1 Manihot esculenta cassava30727.valid.m1 N 0.714
cassava30728.valid.m1 Manihot esculenta cassava30728.valid.m1 N 0.714
cassava35659.valid.m1 Manihot esculenta cassava35659.valid.m1 N 0.714
cassava35666.valid.m1 Manihot esculenta cassava35666.valid.m1 N 0.714
cassava35665.valid.m1 Manihot esculenta cassava35665.valid.m1 N 0.714
cassava35667.valid.m1 Manihot esculenta cassava35667.valid.m1 N 0.714
cassava38866.m1 Manihot esculenta cassava38866.m1 N 0.714
GRMZM2G330019 Zea mays GRMZM2G330019 N 0.714
cassava38867.m1 Manihot esculenta cassava38867.m1 N 0.714
cassava35663.valid.m1 Manihot esculenta cassava35663.valid.m1 N 0.714
cassava35662.valid.m1 Manihot esculenta cassava35662.valid.m1 N 0.714
cassava35658.valid.m1 Manihot esculenta cassava35658.valid.m1 N 0.714
cassava35657.valid.m1 Manihot esculenta cassava35657.valid.m1 N 0.714
cassava12388.valid.m1 Manihot esculenta cassava12388.valid.m1 N 0.714
cassava35660.valid.m1 Manihot esculenta cassava35660.valid.m1 N 0.714
cassava35661.valid.m1 Manihot esculenta cassava35661.valid.m1 N 0.714
cassava30729.valid.m1 Manihot esculenta cassava30729.valid.m1 N 0.714
MDP0000488588 Malus x domestica MDP0000488588 N 0.714
PK26094.1 Cannabis sativa PK26094.1 N 0.714
mgf013853m Mimulus guttatus mgf013853m N 0.714
PK02315.1 Cannabis sativa PK02315.1 N 0.714
SB01G005500 Sorghum bicolor Sb01g005500 N 0.714
cassava12387.valid.m1 Manihot esculenta cassava12387.valid.m1 N 0.714
Glyma16g04590.1 Glycine max Glyma16g04590.1 N 0.714
LOC_Os07g07490 Oryza sativa LOC_Os07g07490 N 0.714
GSVIVG00023248001 Vitis vinifera GSVIVG00023248001 N 0.714
Glyma19g28710.1 Glycine max Glyma19g28710.1 N 0.714
mgf009938m Mimulus guttatus mgf009938m N 0.714
BGIOSIBCE023845 Oryza indica BGIOSIBCE023845 N 0.714
MDP0000718677 Malus x domestica MDP0000718677 N 0.714
Sb01g046550 Sorghum bicolor Sb01g046550 N 0.714
GRMZM2G076062 Zea mays GRMZM2G076062 N 0.714
cassava12386.valid.m1 Manihot esculenta cassava12386.valid.m1 N 0.714
MDP0000129009 Malus x domestica MDP0000129009 N 0.714
XM_002884922.1 Arabidopsis lyrata fgenesh2_kg.3__1434__AT3G13460.1 N 0.703
cassava18204.valid.m1 Manihot esculenta cassava18204.valid.m1 N 0.703
cassava18203.valid.m1 Manihot esculenta cassava18203.valid.m1 N 0.703
BRADI1G05970 Brachypodium distachyon BRADI1G05970 N 0.703
cassava18205.valid.m1 Manihot esculenta cassava18205.valid.m1 N 0.703
Glyma08g13130.1 Glycine max Glyma08g13130.1 N 0.703
cassava20495.m1 Manihot esculenta cassava20495.m1 N 0.703
29765.m000746 Ricinus communis 29765.m000746 N 0.703
cassava20494.m1 Manihot esculenta cassava20494.m1 N 0.703
Cucsa.142200 Cucumis sativus Cucsa.142200 N 0.703
MDP0000256033 Malus x domestica MDP0000256033 N 0.703
B9N0D5_POPTR Populus trichocarpa POPTR_0004s23250 N 0.703
ECT2 Arabidopsis thaliana AT3G13460-TAIR-G N 0.703