29890.m000285 (Ricinus communis)
YTH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF04146 (YTH) IPR007275 29890.m000285 T62292_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
29890.m000285 YTH 337 427

Links

Other YTH family RBPs
Other Ricinus communis RBPs

172 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
B9N817_POPTR Populus trichocarpa POPTR_0018s14670 N 0.945
B9HBC4_POPTR Populus trichocarpa POPTR_0006s07970 N 0.934
Cucsa.356240 Cucumis sativus Cucsa.356240 N 0.923
mgf019821m Mimulus guttatus mgf019821m N 0.923
PK05579.1 Cannabis sativa PK05579.1 N 0.901
ppa002677m Prunus persica ppa002677m N 0.879
XM_002882758.1 Arabidopsis lyrata fgenesh2_kg.3__1376__AT3G13060.2 N 0.868
ECT5 Arabidopsis thaliana AT3G13060-TAIR-G N 0.868
MDP0000189157 Malus x domestica MDP0000189157 N 0.846
GSVIVG00032236001 Vitis vinifera GSVIVG00032236001 N 0.846
ECT10 Arabidopsis thaliana AT5G58190-TAIR-G N 0.835
BGIOSIBCE028829 Oryza indica BGIOSIBCE028829 N 0.835
GSVIVG00029460001 Vitis vinifera GSVIVG00029460001 N 0.835
LOC_Os08g44200 Oryza sativa LOC_Os08g44200 N 0.835
B9N5D4_POPTR Populus trichocarpa POPTR_0014s00320 N 0.835
XM_002864508.1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_8001450 N 0.835
B9HG69_POPTR Populus trichocarpa POPTR_0007s15150 N 0.835
PK17832.1 Cannabis sativa PK17832.1 N 0.824
GRMZM2G025488 Zea mays GRMZM2G025488 N 0.824
cassava1917.valid.m1 Manihot esculenta cassava1917.valid.m1 N 0.824
cassava1918.valid.m1 Manihot esculenta cassava1918.valid.m1 N 0.824
cassava1916.valid.m1 Manihot esculenta cassava1916.valid.m1 N 0.824
B9GMK5_POPTR Populus trichocarpa POPTR_0001s13870 N 0.824
SB07G024500 Sorghum bicolor Sb07g024500 N 0.824
29929.m004643 Ricinus communis 29929.m004643 N 0.813
BRADI3G42640 Brachypodium distachyon BRADI3G42640 N 0.813
MDP0000405927 Malus x domestica MDP0000405927 N 0.813
cassava6538.valid.m1 Manihot esculenta cassava6538.valid.m1 N 0.813
ppa002588m Prunus persica ppa002588m N 0.813
ppa002483m Prunus persica ppa002483m N 0.813
MDP0000617859 Malus x domestica MDP0000617859 N 0.813
MDP0000287088 Malus x domestica MDP0000287088 N 0.813
cassava12061.valid.m1 Manihot esculenta cassava12061.valid.m1 N 0.813
MDP0000552419 Malus x domestica MDP0000552419 N 0.802
MDP0000248088 Malus x domestica MDP0000248088 N 0.802
chr3.CM0292.380.nc Lotus japonicus chr3.CM0292.380.nc N 0.802
Medtr4g163280 Medicago truncatula Medtr4g163280 N 0.802
Glyma07g00280.1 Glycine max Glyma07g00280.1 N 0.791
XM_002893450.1 Arabidopsis lyrata fgenesh2_kg.1__2951__AT1G27960.1 N 0.791
SB07G006330 Sorghum bicolor Sb07g006330 N 0.791
GRMZM2G442195 Zea mays GRMZM2G442195 N 0.780
Glyma08g24210.1 Glycine max Glyma08g24210.1 N 0.780
GSVIVG00010494001 Vitis vinifera GSVIVG00010494001 N 0.780
BRADI3G18190 Brachypodium distachyon BRADI3G18190 N 0.780
LOC_Os08g12760 Oryza sativa LOC_Os08g12760 N 0.780
BGIOSIBCE026930 Oryza indica BGIOSIBCE026930 N 0.780
ECT9 Arabidopsis thaliana AT1G27960-TAIR-G N 0.780
cassava42992.valid.m1 Manihot esculenta cassava42992.valid.m1 N 0.769
cassava42993.valid.m1 Manihot esculenta cassava42993.valid.m1 N 0.769
PK01736.1 Cannabis sativa PK01736.1 N 0.769
Glyma15g14490.1 Glycine max Glyma15g14490.1 N 0.769
BGIOSIBCE003171 Oryza indica BGIOSIBCE003171 N 0.758
GSVIVG00017649001 Vitis vinifera GSVIVG00017649001 N 0.758
SB06G027960 Sorghum bicolor Sb06g027960 N 0.758
BRADI2G46590 Brachypodium distachyon BRADI2G46590 N 0.758
LOC_Os04g51940 Oryza sativa LOC_Os04g51940 N 0.758
LOC_Os01g48790 Oryza sativa LOC_Os01g48790 N 0.758
LOC_Os03g53670 Oryza sativa LOC_Os03g53670 N 0.758
MDP0000171737 Malus x domestica MDP0000171737 N 0.747
29889.m003364 Ricinus communis 29889.m003364 N 0.747
SB03G031190 Sorghum bicolor Sb03g031190 N 0.747
PDK_20s1308332g001 Phoenix dactylifera PDK_20s1308332g001 N 0.747
ppa003664m Prunus persica ppa003664m N 0.747
B9HII9_POPTR Populus trichocarpa POPTR_0008s09960 N 0.747
MDP0000299155 Malus x domestica MDP0000299155 N 0.747
ppa018635m Prunus persica ppa018635m N 0.747
GRMZM2G169116 Zea mays GRMZM2G169116 N 0.747
Glyma17g04270.1 Glycine max Glyma17g04270.1 N 0.747
gw1.181.55.1 Physcomitrella patens gw1.181.55.1 N 0.736
MDP0000306387 Malus x domestica MDP0000306387 N 0.736
MDP0000286471 Malus x domestica MDP0000286471 N 0.736
B9HI18_POPTR Populus trichocarpa POPTR_0008s08030 N 0.736
Glyma09g03590.1 Glycine max Glyma09g03590.1 N 0.736
MDP0000231231 Malus x domestica MDP0000231231 N 0.736
mgf017987m Mimulus guttatus mgf017987m N 0.736
XM_002894050.1 Arabidopsis lyrata fgenesh2_kg.1__3903__AT1G48110.2 N 0.736
cassava17771.valid.m1 Manihot esculenta cassava17771.valid.m1 N 0.736
GSVIVG00033395001 Vitis vinifera GSVIVG00033395001 N 0.736
cassava17772.valid.m1 Manihot esculenta cassava17772.valid.m1 N 0.736
GSVIVG00036696001 Vitis vinifera GSVIVG00036696001 N 0.736
GRMZM2G126338 Zea mays GRMZM2G126338 N 0.736
Cucsa.135220 Cucumis sativus Cucsa.135220 N 0.736
Medtr8g134440 Medicago truncatula Medtr8g134440 N 0.736
ECT3 Arabidopsis thaliana AT5G61020-TAIR-G N 0.736
GRMZM2G144726 Zea mays GRMZM2G144726 N 0.736
ECT7 Arabidopsis thaliana AT1G48110-TAIR-G N 0.736
GRMZM2G127780 Zea mays GRMZM2G127780 N 0.736
chr6.LjT36O06.80.nd Lotus japonicus chr6.LjT36O06.80.nd N 0.736
SB01G008170 Sorghum bicolor Sb01g008170 N 0.736
MDP0000132385 Malus x domestica MDP0000132385 N 0.736
ECT2 Arabidopsis thaliana AT3G13460-TAIR-G N 0.725
BGIOSIBCE016517 Oryza indica BGIOSIBCE016517 N 0.725
BGIOSIBCE010884 Oryza indica BGIOSIBCE010884 N 0.725
BRADI4G02150 Brachypodium distachyon BRADI4G02150 N 0.725
gw1.198.66.1 Physcomitrella patens gw1.198.66.1 N 0.725
Glyma07g36110.1 Glycine max Glyma07g36110.1 N 0.725
29955.m001158 Ricinus communis 29955.m001158 N 0.725
cassava35666.valid.m1 Manihot esculenta cassava35666.valid.m1 N 0.725
cassava38867.m1 Manihot esculenta cassava38867.m1 N 0.725
cassava38866.m1 Manihot esculenta cassava38866.m1 N 0.725
B9HX84_POPTR Populus trichocarpa POPTR_0010s16210 N 0.725
cassava35665.valid.m1 Manihot esculenta cassava35665.valid.m1 N 0.725
XM_002866364.1 Arabidopsis lyrata fgenesh2_kg.8__2071__AT5G61020.1 N 0.725
LOC_Os03g20180 Oryza sativa LOC_Os03g20180 N 0.725
mgf013853m Mimulus guttatus mgf013853m N 0.725
XM_002884922.1 Arabidopsis lyrata fgenesh2_kg.3__1434__AT3G13460.1 N 0.725
mgf009938m Mimulus guttatus mgf009938m N 0.725
cassava35667.valid.m1 Manihot esculenta cassava35667.valid.m1 N 0.725
mgf013935m Mimulus guttatus mgf013935m N 0.725
cassava35657.valid.m1 Manihot esculenta cassava35657.valid.m1 N 0.725
mgf015583m Mimulus guttatus mgf015583m N 0.725
mgf014143m Mimulus guttatus mgf014143m N 0.725
cassava35660.valid.m1 Manihot esculenta cassava35660.valid.m1 N 0.725
cassava35659.valid.m1 Manihot esculenta cassava35659.valid.m1 N 0.725
cassava35658.valid.m1 Manihot esculenta cassava35658.valid.m1 N 0.725
cassava35663.valid.m1 Manihot esculenta cassava35663.valid.m1 N 0.725
cassava35662.valid.m1 Manihot esculenta cassava35662.valid.m1 N 0.725
cassava35661.valid.m1 Manihot esculenta cassava35661.valid.m1 N 0.725
PDK_20s1441394g001 Phoenix dactylifera PDK_20s1441394g001 N 0.725
MDP0000124048 Malus x domestica MDP0000124048 N 0.725
Medtr2g036990 Medicago truncatula Medtr2g036990 N 0.725
PK23104.1 Cannabis sativa PK23104.1 N 0.725
MDP0000488588 Malus x domestica MDP0000488588 N 0.714
GSVIVG00025494001 Vitis vinifera GSVIVG00025494001 N 0.714
cassava16277.m1 Manihot esculenta cassava16277.m1 N 0.714
MDP0000718677 Malus x domestica MDP0000718677 N 0.714
XM_002885156.1 Arabidopsis lyrata Al_scaffold_0003_1823 N 0.714
B9GXX7_POPTR Populus trichocarpa POPTR_0003s20840 N 0.714
A9PED2_POPTR Populus trichocarpa POPTR_0019s04990 N 0.714
SB02G003990 Sorghum bicolor Sb02g003990 N 0.714
29950.m001140 Ricinus communis 29950.m001140 N 0.714
B9HYD4_POPTR Populus trichocarpa POPTR_0010s18300 N 0.714
cassava12386.valid.m1 Manihot esculenta cassava12386.valid.m1 N 0.714
cassava12389.valid.m1 Manihot esculenta cassava12389.valid.m1 N 0.714
cassava12388.valid.m1 Manihot esculenta cassava12388.valid.m1 N 0.714
cassava12387.valid.m1 Manihot esculenta cassava12387.valid.m1 N 0.714
Glyma02g07920.1 Glycine max Glyma02g07920.1 N 0.714
Glyma15g41960.1 Glycine max Glyma15g41960.1 N 0.714
cassava20494.m1 Manihot esculenta cassava20494.m1 N 0.714
cassava18205.valid.m1 Manihot esculenta cassava18205.valid.m1 N 0.714
ECT6 Arabidopsis thaliana AT3G17330-TAIR-G N 0.714
cassava20495.m1 Manihot esculenta cassava20495.m1 N 0.714
cassava30727.valid.m1 Manihot esculenta cassava30727.valid.m1 N 0.714
cassava18204.valid.m1 Manihot esculenta cassava18204.valid.m1 N 0.714
cassava30728.valid.m1 Manihot esculenta cassava30728.valid.m1 N 0.714
cassava30729.valid.m1 Manihot esculenta cassava30729.valid.m1 N 0.714
cassava18203.valid.m1 Manihot esculenta cassava18203.valid.m1 N 0.714
PDK_20s1631851g001 Phoenix dactylifera PDK_20s1631851g001 N 0.714
PDK_20s1352821g002 Phoenix dactylifera PDK_20s1352821g002 N 0.714
SB01G005500 Sorghum bicolor Sb01g005500 N 0.703
ECT1 Arabidopsis thaliana AT3G03950-TAIR-G N 0.703
cassava22612.valid.m1 Manihot esculenta cassava22612.valid.m1 N 0.703
LjSGA_032005.1 Lotus japonicus LjSGA_032005.1 N 0.703
ECT4 Arabidopsis thaliana AT1G55500-TAIR-G N 0.703
Medtr6g030790 Medicago truncatula Medtr6g030790 N 0.703
Medtr2g085380 Medicago truncatula Medtr2g085380 N 0.703
Cucsa.142200 Cucumis sativus Cucsa.142200 N 0.703
Medtr6g030800 Medicago truncatula Medtr6g030800 N 0.703
ECT8 Arabidopsis thaliana AT1G79270-TAIR-G N 0.703
Sb01g046550 Sorghum bicolor Sb01g046550 N 0.703
GRMZM2G330019 Zea mays GRMZM2G330019 N 0.703
Glyma08g17240.1 Glycine max Glyma08g17240.1 N 0.703
Glyma19g28710.1 Glycine max Glyma19g28710.1 N 0.703
XM_002891791.1 Arabidopsis lyrata fgenesh1_pg.C_scaffold_1004195 N 0.703
XM_002887730.1 Arabidopsis lyrata fgenesh2_kg.2__2224__AT1G79270.1 N 0.703
LOC_Os07g07490 Oryza sativa LOC_Os07g07490 N 0.703
BRADI1G64100 Brachypodium distachyon BRADI1G64100 N 0.703
PK02315.1 Cannabis sativa PK02315.1 N 0.703
Glyma16g04590.1 Glycine max Glyma16g04590.1 N 0.703
BGIOSIBCE023845 Oryza indica BGIOSIBCE023845 N 0.703
BRADI1G05970 Brachypodium distachyon BRADI1G05970 N 0.703
MDP0000129009 Malus x domestica MDP0000129009 N 0.703