BGIOSIBCE028829 (Oryza indica)
YTH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF04146 (YTH) IPR007275 BGIOSIBCE028829 T61948_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
BGIOSIBCE028829 YTH 492 582

Links

Other YTH family RBPs
Other Oryza indica RBPs

188 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
LOC_Os08g44200 Oryza sativa LOC_Os08g44200 N 1.000
GRMZM2G025488 Zea mays GRMZM2G025488 N 0.989
SB07G024500 Sorghum bicolor Sb07g024500 N 0.978
BRADI3G42640 Brachypodium distachyon BRADI3G42640 N 0.956
XM_002882758.1 Arabidopsis lyrata fgenesh2_kg.3__1376__AT3G13060.2 N 0.901
ECT5 Arabidopsis thaliana AT3G13060-TAIR-G N 0.901
B9HG69_POPTR Populus trichocarpa POPTR_0007s15150 N 0.879
B9N5D4_POPTR Populus trichocarpa POPTR_0014s00320 N 0.879
MDP0000405927 Malus x domestica MDP0000405927 N 0.868
cassava1918.valid.m1 Manihot esculenta cassava1918.valid.m1 N 0.868
MDP0000617859 Malus x domestica MDP0000617859 N 0.868
LOC_Os08g12760 Oryza sativa LOC_Os08g12760 N 0.868
cassava1917.valid.m1 Manihot esculenta cassava1917.valid.m1 N 0.868
SB07G006330 Sorghum bicolor Sb07g006330 N 0.868
BGIOSIBCE026930 Oryza indica BGIOSIBCE026930 N 0.868
cassava1916.valid.m1 Manihot esculenta cassava1916.valid.m1 N 0.868
GSVIVG00029460001 Vitis vinifera GSVIVG00029460001 N 0.868
MDP0000287088 Malus x domestica MDP0000287088 N 0.868
PDK_20s1441394g001 Phoenix dactylifera PDK_20s1441394g001 N 0.857
MDP0000248088 Malus x domestica MDP0000248088 N 0.857
cassava12061.valid.m1 Manihot esculenta cassava12061.valid.m1 N 0.857
29929.m004643 Ricinus communis 29929.m004643 N 0.857
PK17832.1 Cannabis sativa PK17832.1 N 0.857
GRMZM2G442195 Zea mays GRMZM2G442195 N 0.857
MDP0000552419 Malus x domestica MDP0000552419 N 0.857
cassava6538.valid.m1 Manihot esculenta cassava6538.valid.m1 N 0.857
GSVIVG00010494001 Vitis vinifera GSVIVG00010494001 N 0.857
B9GMK5_POPTR Populus trichocarpa POPTR_0001s13870 N 0.846
BRADI3G18190 Brachypodium distachyon BRADI3G18190 N 0.846
ppa002588m Prunus persica ppa002588m N 0.846
ppa002483m Prunus persica ppa002483m N 0.846
Glyma07g00280.1 Glycine max Glyma07g00280.1 N 0.835
Medtr4g163280 Medicago truncatula Medtr4g163280 N 0.835
B9HBC4_POPTR Populus trichocarpa POPTR_0006s07970 N 0.835
29890.m000285 Ricinus communis 29890.m000285 N 0.835
Glyma08g24210.1 Glycine max Glyma08g24210.1 N 0.835
BGIOSIBCE028833 Oryza indica BGIOSIBCE028833 N 0.824
PK01736.1 Cannabis sativa PK01736.1 N 0.824
B9N817_POPTR Populus trichocarpa POPTR_0018s14670 N 0.824
LOC_Os04g51940 Oryza sativa LOC_Os04g51940 N 0.824
LOC_Os03g53670 Oryza sativa LOC_Os03g53670 N 0.824
mgf019821m Mimulus guttatus mgf019821m N 0.824
chr3.CM0292.380.nc Lotus japonicus chr3.CM0292.380.nc N 0.813
GRMZM2G144726 Zea mays GRMZM2G144726 N 0.813
Cucsa.356240 Cucumis sativus Cucsa.356240 N 0.813
cassava42992.valid.m1 Manihot esculenta cassava42992.valid.m1 N 0.802
BRADI1G05970 Brachypodium distachyon BRADI1G05970 N 0.802
SB06G027960 Sorghum bicolor Sb06g027960 N 0.802
cassava42993.valid.m1 Manihot esculenta cassava42993.valid.m1 N 0.802
GRMZM2G126338 Zea mays GRMZM2G126338 N 0.802
SB01G008170 Sorghum bicolor Sb01g008170 N 0.802
PDK_20s1308332g001 Phoenix dactylifera PDK_20s1308332g001 N 0.802
GSVIVG00017649001 Vitis vinifera GSVIVG00017649001 N 0.802
ppa003664m Prunus persica ppa003664m N 0.802
PK05579.1 Cannabis sativa PK05579.1 N 0.802
cassava18205.valid.m1 Manihot esculenta cassava18205.valid.m1 N 0.791
SB02G003990 Sorghum bicolor Sb02g003990 N 0.791
B9GXX7_POPTR Populus trichocarpa POPTR_0003s20840 N 0.791
cassava18203.valid.m1 Manihot esculenta cassava18203.valid.m1 N 0.791
GSVIVG00032236001 Vitis vinifera GSVIVG00032236001 N 0.791
XM_002893450.1 Arabidopsis lyrata fgenesh2_kg.1__2951__AT1G27960.1 N 0.791
cassava17772.valid.m1 Manihot esculenta cassava17772.valid.m1 N 0.791
cassava20495.m1 Manihot esculenta cassava20495.m1 N 0.791
cassava20494.m1 Manihot esculenta cassava20494.m1 N 0.791
cassava18204.valid.m1 Manihot esculenta cassava18204.valid.m1 N 0.791
BRADI4G02150 Brachypodium distachyon BRADI4G02150 N 0.791
BGIOSIBCE016517 Oryza indica BGIOSIBCE016517 N 0.791
cassava17771.valid.m1 Manihot esculenta cassava17771.valid.m1 N 0.791
gw1.198.66.1 Physcomitrella patens gw1.198.66.1 N 0.791
Glyma17g04270.1 Glycine max Glyma17g04270.1 N 0.791
gw1.181.55.1 Physcomitrella patens gw1.181.55.1 N 0.791
GRMZM2G330019 Zea mays GRMZM2G330019 N 0.780
ECT9 Arabidopsis thaliana AT1G27960-TAIR-G N 0.780
cassava35667.valid.m1 Manihot esculenta cassava35667.valid.m1 N 0.780
cassava35666.valid.m1 Manihot esculenta cassava35666.valid.m1 N 0.780
cassava38866.m1 Manihot esculenta cassava38866.m1 N 0.780
cassava38867.m1 Manihot esculenta cassava38867.m1 N 0.780
MDP0000171737 Malus x domestica MDP0000171737 N 0.780
ECT8 Arabidopsis thaliana AT1G79270-TAIR-G N 0.780
mgf009938m Mimulus guttatus mgf009938m N 0.780
MDP0000488588 Malus x domestica MDP0000488588 N 0.780
mgf013853m Mimulus guttatus mgf013853m N 0.780
chr6.LjT36O06.80.nd Lotus japonicus chr6.LjT36O06.80.nd N 0.780
MDP0000124048 Malus x domestica MDP0000124048 N 0.780
cassava35665.valid.m1 Manihot esculenta cassava35665.valid.m1 N 0.780
Cucsa.135220 Cucumis sativus Cucsa.135220 N 0.780
cassava35657.valid.m1 Manihot esculenta cassava35657.valid.m1 N 0.780
Sb01g046550 Sorghum bicolor Sb01g046550 N 0.780
cassava35663.valid.m1 Manihot esculenta cassava35663.valid.m1 N 0.780
cassava35659.valid.m1 Manihot esculenta cassava35659.valid.m1 N 0.780
cassava35658.valid.m1 Manihot esculenta cassava35658.valid.m1 N 0.780
cassava35662.valid.m1 Manihot esculenta cassava35662.valid.m1 N 0.780
cassava35661.valid.m1 Manihot esculenta cassava35661.valid.m1 N 0.780
cassava35660.valid.m1 Manihot esculenta cassava35660.valid.m1 N 0.780
29889.m003364 Ricinus communis 29889.m003364 N 0.769
GRMZM2G076062 Zea mays GRMZM2G076062 N 0.769
PDK_20s1352821g002 Phoenix dactylifera PDK_20s1352821g002 N 0.769
XM_002866364.1 Arabidopsis lyrata fgenesh2_kg.8__2071__AT5G61020.1 N 0.769
ppa018635m Prunus persica ppa018635m N 0.769
XM_002887730.1 Arabidopsis lyrata fgenesh2_kg.2__2224__AT1G79270.1 N 0.769
ppa002677m Prunus persica ppa002677m N 0.769
XM_002884922.1 Arabidopsis lyrata fgenesh2_kg.3__1434__AT3G13460.1 N 0.769
MDP0000286471 Malus x domestica MDP0000286471 N 0.769
MDP0000231231 Malus x domestica MDP0000231231 N 0.769
MDP0000189157 Malus x domestica MDP0000189157 N 0.769
MDP0000132385 Malus x domestica MDP0000132385 N 0.769
LOC_Os07g07490 Oryza sativa LOC_Os07g07490 N 0.769
XM_002864508.1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_8001450 N 0.769
Medtr2g036990 Medicago truncatula Medtr2g036990 N 0.769
LOC_Os01g48790 Oryza sativa LOC_Os01g48790 N 0.769
MDP0000306387 Malus x domestica MDP0000306387 N 0.769
GSVIVG00036696001 Vitis vinifera GSVIVG00036696001 N 0.769
cassava12386.valid.m1 Manihot esculenta cassava12386.valid.m1 N 0.769
cassava30727.valid.m1 Manihot esculenta cassava30727.valid.m1 N 0.769
ECT10 Arabidopsis thaliana AT5G58190-TAIR-G N 0.769
Glyma07g36110.1 Glycine max Glyma07g36110.1 N 0.769
Glyma15g14490.1 Glycine max Glyma15g14490.1 N 0.769
BGIOSIBCE003171 Oryza indica BGIOSIBCE003171 N 0.769
ECT3 Arabidopsis thaliana AT5G61020-TAIR-G N 0.769
ECT2 Arabidopsis thaliana AT3G13460-TAIR-G N 0.769
cassava12389.valid.m1 Manihot esculenta cassava12389.valid.m1 N 0.769
Cucsa.142200 Cucumis sativus Cucsa.142200 N 0.769
cassava30729.valid.m1 Manihot esculenta cassava30729.valid.m1 N 0.769
cassava30728.valid.m1 Manihot esculenta cassava30728.valid.m1 N 0.769
cassava12387.valid.m1 Manihot esculenta cassava12387.valid.m1 N 0.769
BRADI2G46590 Brachypodium distachyon BRADI2G46590 N 0.769
BGIOSIBCE023845 Oryza indica BGIOSIBCE023845 N 0.769
cassava12388.valid.m1 Manihot esculenta cassava12388.valid.m1 N 0.769
LOC_Os03g20180 Oryza sativa LOC_Os03g20180 N 0.758
BRADI1G74560 Brachypodium distachyon BRADI1G74560 N 0.758
MDP0000718677 Malus x domestica MDP0000718677 N 0.758
PK23104.1 Cannabis sativa PK23104.1 N 0.758
XM_002894050.1 Arabidopsis lyrata fgenesh2_kg.1__3903__AT1G48110.2 N 0.758
LjSGA_032005.1 Lotus japonicus LjSGA_032005.1 N 0.758
ECT7 Arabidopsis thaliana AT1G48110-TAIR-G N 0.758
GSVIVG00025494001 Vitis vinifera GSVIVG00025494001 N 0.758
GSVIVG00033395001 Vitis vinifera GSVIVG00033395001 N 0.758
XM_002891791.1 Arabidopsis lyrata fgenesh1_pg.C_scaffold_1004195 N 0.758
BGIOSIBCE010884 Oryza indica BGIOSIBCE010884 N 0.758
Medtr8g134440 Medicago truncatula Medtr8g134440 N 0.758
Glyma15g41960.1 Glycine max Glyma15g41960.1 N 0.758
SB03G031190 Sorghum bicolor Sb03g031190 N 0.758
SB01G005500 Sorghum bicolor Sb01g005500 N 0.758
gw1.1.157.1 Selaginella moellendorfii gw1.1.157.1 N 0.758
Glyma05g30020.1 Glycine max Glyma05g30020.1 N 0.758
29955.m001158 Ricinus communis 29955.m001158 N 0.758
mgf013935m Mimulus guttatus mgf013935m N 0.758
Medtr2g085380 Medicago truncatula Medtr2g085380 N 0.758
GRMZM2G169116 Zea mays GRMZM2G169116 N 0.758
Glyma08g17240.1 Glycine max Glyma08g17240.1 N 0.758
A9PED2_POPTR Populus trichocarpa POPTR_0019s04990 N 0.758
29950.m001140 Ricinus communis 29950.m001140 N 0.747
Glyma08g13130.1 Glycine max Glyma08g13130.1 N 0.747
mgf017987m Mimulus guttatus mgf017987m N 0.747
B9HII9_POPTR Populus trichocarpa POPTR_0008s09960 N 0.747
B9HI18_POPTR Populus trichocarpa POPTR_0008s08030 N 0.747
MDP0000129009 Malus x domestica MDP0000129009 N 0.747
B9HX84_POPTR Populus trichocarpa POPTR_0010s16210 N 0.747
ECT4 Arabidopsis thaliana AT1G55500-TAIR-G N 0.747
PDK_20s1631851g001 Phoenix dactylifera PDK_20s1631851g001 N 0.747
LOC_Os03g06240 Oryza sativa LOC_Os03g06240 N 0.747
Medtr4g136900 Medicago truncatula Medtr4g136900 N 0.747
GRMZM2G127780 Zea mays GRMZM2G127780 N 0.747
BGIOSIBCE009738 Oryza indica BGIOSIBCE009738 N 0.747
mgf019846m Mimulus guttatus mgf019846m N 0.747
Glyma09g03590.1 Glycine max Glyma09g03590.1 N 0.736
PK23716.1 Cannabis sativa PK23716.1 N 0.736
cassava22612.valid.m1 Manihot esculenta cassava22612.valid.m1 N 0.736
mgf015583m Mimulus guttatus mgf015583m N 0.736
mgf014143m Mimulus guttatus mgf014143m N 0.736
B9HYD4_POPTR Populus trichocarpa POPTR_0010s18300 N 0.736
ECT6 Arabidopsis thaliana AT3G17330-TAIR-G N 0.725
Glyma16g04590.1 Glycine max Glyma16g04590.1 N 0.725
Medtr6g030790 Medicago truncatula Medtr6g030790 N 0.725
Medtr6g030800 Medicago truncatula Medtr6g030800 N 0.725
Medtr7g100450 Medicago truncatula Medtr7g100450 N 0.725
Glyma19g28710.1 Glycine max Glyma19g28710.1 N 0.725
ECT1 Arabidopsis thaliana AT3G03950-TAIR-G N 0.725
BRADI1G64100 Brachypodium distachyon BRADI1G64100 N 0.725
XM_002885156.1 Arabidopsis lyrata Al_scaffold_0003_1823 N 0.725
PK26094.1 Cannabis sativa PK26094.1 N 0.725
PK02315.1 Cannabis sativa PK02315.1 N 0.725
XM_002882275.1 Arabidopsis lyrata fgenesh2_kg.3__349__AT3G03950.3 N 0.714
BRADI3G06027 Brachypodium distachyon BRADI3G06027 N 0.714
SB09G000580 Sorghum bicolor Sb09g000580 N 0.714
mgf014829m Mimulus guttatus mgf014829m N 0.703
mgf001716m Mimulus guttatus mgf001716m N 0.703
BRADI5G01317 Brachypodium distachyon BRADI5G01317 N 0.703