MDP0000189157 (Malus x domestica)
YTH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF04146 (YTH) IPR007275 MDP0000189157 T62531_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
MDP0000189157 YTH 405 495

Links

Other YTH family RBPs
Other Malus x domestica RBPs

67 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ppa002677m Prunus persica ppa002677m N 0.934
PK05579.1 Cannabis sativa PK05579.1 N 0.879
Cucsa.356240 Cucumis sativus Cucsa.356240 N 0.868
B9HBC4_POPTR Populus trichocarpa POPTR_0006s07970 N 0.846
B9N817_POPTR Populus trichocarpa POPTR_0018s14670 N 0.846
29890.m000285 Ricinus communis 29890.m000285 N 0.846
ECT10 Arabidopsis thaliana AT5G58190-TAIR-G N 0.802
XM_002864508.1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_8001450 N 0.802
mgf019821m Mimulus guttatus mgf019821m N 0.802
GSVIVG00032236001 Vitis vinifera GSVIVG00032236001 N 0.802
MDP0000299155 Malus x domestica MDP0000299155 N 0.791
ECT5 Arabidopsis thaliana AT3G13060-TAIR-G N 0.780
XM_002882758.1 Arabidopsis lyrata fgenesh2_kg.3__1376__AT3G13060.2 N 0.780
cassava1918.valid.m1 Manihot esculenta cassava1918.valid.m1 N 0.769
cassava1916.valid.m1 Manihot esculenta cassava1916.valid.m1 N 0.769
LOC_Os08g44200 Oryza sativa LOC_Os08g44200 N 0.769
BGIOSIBCE028829 Oryza indica BGIOSIBCE028829 N 0.769
cassava1917.valid.m1 Manihot esculenta cassava1917.valid.m1 N 0.769
MDP0000552419 Malus x domestica MDP0000552419 N 0.758
GRMZM2G025488 Zea mays GRMZM2G025488 N 0.758
MDP0000248088 Malus x domestica MDP0000248088 N 0.758
SB07G024500 Sorghum bicolor Sb07g024500 N 0.758
PK17832.1 Cannabis sativa PK17832.1 N 0.758
GSVIVG00029460001 Vitis vinifera GSVIVG00029460001 N 0.758
Medtr4g163280 Medicago truncatula Medtr4g163280 N 0.747
BRADI3G42640 Brachypodium distachyon BRADI3G42640 N 0.747
MDP0000405927 Malus x domestica MDP0000405927 N 0.747
B9HG69_POPTR Populus trichocarpa POPTR_0007s15150 N 0.747
MDP0000287088 Malus x domestica MDP0000287088 N 0.747
B9N5D4_POPTR Populus trichocarpa POPTR_0014s00320 N 0.747
ppa002483m Prunus persica ppa002483m N 0.747
ppa002588m Prunus persica ppa002588m N 0.747
MDP0000617859 Malus x domestica MDP0000617859 N 0.747
cassava6538.valid.m1 Manihot esculenta cassava6538.valid.m1 N 0.747
cassava12061.valid.m1 Manihot esculenta cassava12061.valid.m1 N 0.736
Glyma07g00280.1 Glycine max Glyma07g00280.1 N 0.736
29929.m004643 Ricinus communis 29929.m004643 N 0.736
chr3.CM0292.380.nc Lotus japonicus chr3.CM0292.380.nc N 0.736
B9GMK5_POPTR Populus trichocarpa POPTR_0001s13870 N 0.736
PDK_20s1441394g001 Phoenix dactylifera PDK_20s1441394g001 N 0.725
GSVIVG00017649001 Vitis vinifera GSVIVG00017649001 N 0.725
cassava42993.valid.m1 Manihot esculenta cassava42993.valid.m1 N 0.725
cassava42992.valid.m1 Manihot esculenta cassava42992.valid.m1 N 0.725
Glyma08g24210.1 Glycine max Glyma08g24210.1 N 0.725
XM_002893450.1 Arabidopsis lyrata fgenesh2_kg.1__2951__AT1G27960.1 N 0.725
MDP0000286471 Malus x domestica MDP0000286471 N 0.714
LOC_Os03g20180 Oryza sativa LOC_Os03g20180 N 0.714
BGIOSIBCE010884 Oryza indica BGIOSIBCE010884 N 0.714
MDP0000132385 Malus x domestica MDP0000132385 N 0.714
ppa018635m Prunus persica ppa018635m N 0.714
GSVIVG00010494001 Vitis vinifera GSVIVG00010494001 N 0.714
MDP0000306387 Malus x domestica MDP0000306387 N 0.714
MDP0000231231 Malus x domestica MDP0000231231 N 0.714
ECT9 Arabidopsis thaliana AT1G27960-TAIR-G N 0.714
Medtr8g134440 Medicago truncatula Medtr8g134440 N 0.703
Glyma17g04270.1 Glycine max Glyma17g04270.1 N 0.703
chr6.LjT36O06.80.nd Lotus japonicus chr6.LjT36O06.80.nd N 0.703
GSVIVG00036696001 Vitis vinifera GSVIVG00036696001 N 0.703
BGIOSIBCE026930 Oryza indica BGIOSIBCE026930 N 0.703
ECT7 Arabidopsis thaliana AT1G48110-TAIR-G N 0.703
PDK_20s1308332g001 Phoenix dactylifera PDK_20s1308332g001 N 0.703
XM_002894050.1 Arabidopsis lyrata fgenesh2_kg.1__3903__AT1G48110.2 N 0.703
LOC_Os03g53670 Oryza sativa LOC_Os03g53670 N 0.703
29889.m003364 Ricinus communis 29889.m003364 N 0.703
SB07G006330 Sorghum bicolor Sb07g006330 N 0.703
LOC_Os08g12760 Oryza sativa LOC_Os08g12760 N 0.703
Cucsa.135220 Cucumis sativus Cucsa.135220 N 0.703