GSVIVG00010494001 (Vitis vinifera)
YTH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF04146 (YTH) IPR007275 GSVIVG00010494001 T62212_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
GSVIVT00010494001 YTH 381 471

Links

Other YTH family RBPs
Other Vitis vinifera RBPs

145 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
B9N5D4_POPTR Populus trichocarpa POPTR_0014s00320 N 0.923
B9HG69_POPTR Populus trichocarpa POPTR_0007s15150 N 0.912
GSVIVG00029460001 Vitis vinifera GSVIVG00029460001 N 0.912
B9GMK5_POPTR Populus trichocarpa POPTR_0001s13870 N 0.901
cassava1916.valid.m1 Manihot esculenta cassava1916.valid.m1 N 0.901
29929.m004643 Ricinus communis 29929.m004643 N 0.901
ECT5 Arabidopsis thaliana AT3G13060-TAIR-G N 0.901
cassava1917.valid.m1 Manihot esculenta cassava1917.valid.m1 N 0.901
XM_002882758.1 Arabidopsis lyrata fgenesh2_kg.3__1376__AT3G13060.2 N 0.901
cassava1918.valid.m1 Manihot esculenta cassava1918.valid.m1 N 0.901
cassava6538.valid.m1 Manihot esculenta cassava6538.valid.m1 N 0.901
cassava12061.valid.m1 Manihot esculenta cassava12061.valid.m1 N 0.901
ppa002483m Prunus persica ppa002483m N 0.890
MDP0000287088 Malus x domestica MDP0000287088 N 0.890
MDP0000405927 Malus x domestica MDP0000405927 N 0.890
ppa002588m Prunus persica ppa002588m N 0.890
MDP0000617859 Malus x domestica MDP0000617859 N 0.890
PK01736.1 Cannabis sativa PK01736.1 N 0.890
MDP0000248088 Malus x domestica MDP0000248088 N 0.879
MDP0000552419 Malus x domestica MDP0000552419 N 0.879
PK17832.1 Cannabis sativa PK17832.1 N 0.879
SB07G024500 Sorghum bicolor Sb07g024500 N 0.868
GRMZM2G025488 Zea mays GRMZM2G025488 N 0.868
Glyma08g24210.1 Glycine max Glyma08g24210.1 N 0.868
Glyma07g00280.1 Glycine max Glyma07g00280.1 N 0.868
Medtr4g163280 Medicago truncatula Medtr4g163280 N 0.868
BGIOSIBCE028829 Oryza indica BGIOSIBCE028829 N 0.857
LOC_Os08g44200 Oryza sativa LOC_Os08g44200 N 0.857
chr3.CM0292.380.nc Lotus japonicus chr3.CM0292.380.nc N 0.846
BRADI3G42640 Brachypodium distachyon BRADI3G42640 N 0.835
BGIOSIBCE026930 Oryza indica BGIOSIBCE026930 N 0.813
ECT8 Arabidopsis thaliana AT1G79270-TAIR-G N 0.813
LOC_Os08g12760 Oryza sativa LOC_Os08g12760 N 0.813
XM_002887730.1 Arabidopsis lyrata fgenesh2_kg.2__2224__AT1G79270.1 N 0.813
SB07G006330 Sorghum bicolor Sb07g006330 N 0.802
GRMZM2G442195 Zea mays GRMZM2G442195 N 0.802
LOC_Os04g51940 Oryza sativa LOC_Os04g51940 N 0.802
gw1.181.55.1 Physcomitrella patens gw1.181.55.1 N 0.791
B9N817_POPTR Populus trichocarpa POPTR_0018s14670 N 0.791
29890.m000285 Ricinus communis 29890.m000285 N 0.780
BRADI2G46590 Brachypodium distachyon BRADI2G46590 N 0.780
LOC_Os01g48790 Oryza sativa LOC_Os01g48790 N 0.780
mgf019821m Mimulus guttatus mgf019821m N 0.780
Glyma08g17240.1 Glycine max Glyma08g17240.1 N 0.780
Glyma15g41960.1 Glycine max Glyma15g41960.1 N 0.780
BGIOSIBCE003171 Oryza indica BGIOSIBCE003171 N 0.780
BRADI3G18190 Brachypodium distachyon BRADI3G18190 N 0.780
GSVIVG00036696001 Vitis vinifera GSVIVG00036696001 N 0.780
ppa003664m Prunus persica ppa003664m N 0.780
MDP0000171737 Malus x domestica MDP0000171737 N 0.780
PDK_20s1441394g001 Phoenix dactylifera PDK_20s1441394g001 N 0.769
gw1.198.66.1 Physcomitrella patens gw1.198.66.1 N 0.769
B9HI18_POPTR Populus trichocarpa POPTR_0008s08030 N 0.769
PK23104.1 Cannabis sativa PK23104.1 N 0.769
LjSGA_032005.1 Lotus japonicus LjSGA_032005.1 N 0.769
SB06G027960 Sorghum bicolor Sb06g027960 N 0.769
SB03G031190 Sorghum bicolor Sb03g031190 N 0.769
Medtr2g085380 Medicago truncatula Medtr2g085380 N 0.769
GRMZM2G169116 Zea mays GRMZM2G169116 N 0.769
29955.m001158 Ricinus communis 29955.m001158 N 0.769
GRMZM2G127780 Zea mays GRMZM2G127780 N 0.769
GSVIVG00032236001 Vitis vinifera GSVIVG00032236001 N 0.769
BGIOSIBCE016517 Oryza indica BGIOSIBCE016517 N 0.769
XM_002893450.1 Arabidopsis lyrata fgenesh2_kg.1__2951__AT1G27960.1 N 0.769
GSVIVG00017649001 Vitis vinifera GSVIVG00017649001 N 0.758
gw1.1.157.1 Selaginella moellendorfii gw1.1.157.1 N 0.758
MDP0000231231 Malus x domestica MDP0000231231 N 0.758
Medtr8g134440 Medicago truncatula Medtr8g134440 N 0.758
MDP0000286471 Malus x domestica MDP0000286471 N 0.758
cassava42992.valid.m1 Manihot esculenta cassava42992.valid.m1 N 0.758
B9HBC4_POPTR Populus trichocarpa POPTR_0006s07970 N 0.758
cassava42993.valid.m1 Manihot esculenta cassava42993.valid.m1 N 0.758
ECT9 Arabidopsis thaliana AT1G27960-TAIR-G N 0.758
Cucsa.356240 Cucumis sativus Cucsa.356240 N 0.758
cassava17772.valid.m1 Manihot esculenta cassava17772.valid.m1 N 0.747
B9HYD4_POPTR Populus trichocarpa POPTR_0010s18300 N 0.747
ppa002677m Prunus persica ppa002677m N 0.747
PK05579.1 Cannabis sativa PK05579.1 N 0.747
PDK_20s1631851g001 Phoenix dactylifera PDK_20s1631851g001 N 0.747
cassava17771.valid.m1 Manihot esculenta cassava17771.valid.m1 N 0.747
Glyma15g14490.1 Glycine max Glyma15g14490.1 N 0.747
Glyma17g04270.1 Glycine max Glyma17g04270.1 N 0.747
PDK_20s1352821g002 Phoenix dactylifera PDK_20s1352821g002 N 0.736
Cucsa.135220 Cucumis sativus Cucsa.135220 N 0.736
B9HII9_POPTR Populus trichocarpa POPTR_0008s09960 N 0.736
ppa018635m Prunus persica ppa018635m N 0.736
chr6.LjT36O06.80.nd Lotus japonicus chr6.LjT36O06.80.nd N 0.736
SB01G008170 Sorghum bicolor Sb01g008170 N 0.736
29889.m003364 Ricinus communis 29889.m003364 N 0.736
GRMZM2G126338 Zea mays GRMZM2G126338 N 0.736
B9HX84_POPTR Populus trichocarpa POPTR_0010s16210 N 0.725
Medtr2g036990 Medicago truncatula Medtr2g036990 N 0.725
PDK_20s1308332g001 Phoenix dactylifera PDK_20s1308332g001 N 0.725
B9GXX7_POPTR Populus trichocarpa POPTR_0003s20840 N 0.725
ECT7 Arabidopsis thaliana AT1G48110-TAIR-G N 0.725
Glyma07g36110.1 Glycine max Glyma07g36110.1 N 0.725
Glyma09g03590.1 Glycine max Glyma09g03590.1 N 0.725
GRMZM2G144726 Zea mays GRMZM2G144726 N 0.725
LOC_Os03g53670 Oryza sativa LOC_Os03g53670 N 0.725
GSVIVG00033395001 Vitis vinifera GSVIVG00033395001 N 0.725
XM_002894050.1 Arabidopsis lyrata fgenesh2_kg.1__3903__AT1G48110.2 N 0.725
MDP0000132385 Malus x domestica MDP0000132385 N 0.725
SB02G003990 Sorghum bicolor Sb02g003990 N 0.725
mgf017987m Mimulus guttatus mgf017987m N 0.725
MDP0000306387 Malus x domestica MDP0000306387 N 0.725
BRADI4G02150 Brachypodium distachyon BRADI4G02150 N 0.714
ECT10 Arabidopsis thaliana AT5G58190-TAIR-G N 0.714
LOC_Os03g20180 Oryza sativa LOC_Os03g20180 N 0.714
PK26094.1 Cannabis sativa PK26094.1 N 0.714
XM_002864508.1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_8001450 N 0.714
ECT1 Arabidopsis thaliana AT3G03950-TAIR-G N 0.714
BGIOSIBCE010884 Oryza indica BGIOSIBCE010884 N 0.714
mgf015583m Mimulus guttatus mgf015583m N 0.714
mgf014143m Mimulus guttatus mgf014143m N 0.714
A9PED2_POPTR Populus trichocarpa POPTR_0019s04990 N 0.714
XM_002885156.1 Arabidopsis lyrata Al_scaffold_0003_1823 N 0.714
MDP0000189157 Malus x domestica MDP0000189157 N 0.714
ECT3 Arabidopsis thaliana AT5G61020-TAIR-G N 0.703
ECT6 Arabidopsis thaliana AT3G17330-TAIR-G N 0.703
BRADI1G05970 Brachypodium distachyon BRADI1G05970 N 0.703
BRADI1G64100 Brachypodium distachyon BRADI1G64100 N 0.703
XM_002882275.1 Arabidopsis lyrata fgenesh2_kg.3__349__AT3G03950.3 N 0.703
XM_002866364.1 Arabidopsis lyrata fgenesh2_kg.8__2071__AT5G61020.1 N 0.703
MDP0000124048 Malus x domestica MDP0000124048 N 0.703
cassava30729.valid.m1 Manihot esculenta cassava30729.valid.m1 N 0.703
cassava35657.valid.m1 Manihot esculenta cassava35657.valid.m1 N 0.703
cassava35658.valid.m1 Manihot esculenta cassava35658.valid.m1 N 0.703
cassava35659.valid.m1 Manihot esculenta cassava35659.valid.m1 N 0.703
cassava30728.valid.m1 Manihot esculenta cassava30728.valid.m1 N 0.703
cassava30727.valid.m1 Manihot esculenta cassava30727.valid.m1 N 0.703
cassava12389.valid.m1 Manihot esculenta cassava12389.valid.m1 N 0.703
cassava12388.valid.m1 Manihot esculenta cassava12388.valid.m1 N 0.703
cassava12387.valid.m1 Manihot esculenta cassava12387.valid.m1 N 0.703
cassava35660.valid.m1 Manihot esculenta cassava35660.valid.m1 N 0.703
cassava35661.valid.m1 Manihot esculenta cassava35661.valid.m1 N 0.703
cassava38866.m1 Manihot esculenta cassava38866.m1 N 0.703
cassava38867.m1 Manihot esculenta cassava38867.m1 N 0.703
cassava12386.valid.m1 Manihot esculenta cassava12386.valid.m1 N 0.703
29950.m001140 Ricinus communis 29950.m001140 N 0.703
cassava35667.valid.m1 Manihot esculenta cassava35667.valid.m1 N 0.703
cassava35666.valid.m1 Manihot esculenta cassava35666.valid.m1 N 0.703
cassava35662.valid.m1 Manihot esculenta cassava35662.valid.m1 N 0.703
cassava35663.valid.m1 Manihot esculenta cassava35663.valid.m1 N 0.703
cassava35665.valid.m1 Manihot esculenta cassava35665.valid.m1 N 0.703
MDP0000488588 Malus x domestica MDP0000488588 N 0.703