Cucsa.356240 (Cucumis sativus)
YTH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF04146 (YTH) IPR007275 Cucsa.356240 T62350_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
Cucsa.356240.1 YTH 370 460

Links

Other YTH family RBPs
Other Cucumis sativus RBPs

157 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
29890.m000285 Ricinus communis 29890.m000285 N 0.923
PK05579.1 Cannabis sativa PK05579.1 N 0.912
ppa002677m Prunus persica ppa002677m N 0.901
B9N817_POPTR Populus trichocarpa POPTR_0018s14670 N 0.890
B9HBC4_POPTR Populus trichocarpa POPTR_0006s07970 N 0.879
mgf019821m Mimulus guttatus mgf019821m N 0.879
MDP0000189157 Malus x domestica MDP0000189157 N 0.868
XM_002864508.1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_8001450 N 0.846
ECT10 Arabidopsis thaliana AT5G58190-TAIR-G N 0.846
XM_002882758.1 Arabidopsis lyrata fgenesh2_kg.3__1376__AT3G13060.2 N 0.835
ECT5 Arabidopsis thaliana AT3G13060-TAIR-G N 0.835
GSVIVG00032236001 Vitis vinifera GSVIVG00032236001 N 0.835
PK17832.1 Cannabis sativa PK17832.1 N 0.813
cassava1916.valid.m1 Manihot esculenta cassava1916.valid.m1 N 0.813
cassava1917.valid.m1 Manihot esculenta cassava1917.valid.m1 N 0.813
BGIOSIBCE028829 Oryza indica BGIOSIBCE028829 N 0.813
cassava1918.valid.m1 Manihot esculenta cassava1918.valid.m1 N 0.813
LOC_Os08g44200 Oryza sativa LOC_Os08g44200 N 0.813
chr3.CM0292.380.nc Lotus japonicus chr3.CM0292.380.nc N 0.802
MDP0000287088 Malus x domestica MDP0000287088 N 0.802
MDP0000617859 Malus x domestica MDP0000617859 N 0.802
GSVIVG00029460001 Vitis vinifera GSVIVG00029460001 N 0.802
MDP0000405927 Malus x domestica MDP0000405927 N 0.802
ppa002483m Prunus persica ppa002483m N 0.802
B9GMK5_POPTR Populus trichocarpa POPTR_0001s13870 N 0.802
ppa002588m Prunus persica ppa002588m N 0.802
Medtr4g163280 Medicago truncatula Medtr4g163280 N 0.802
B9N5D4_POPTR Populus trichocarpa POPTR_0014s00320 N 0.802
Cucsa.135220 Cucumis sativus Cucsa.135220 N 0.802
GRMZM2G025488 Zea mays GRMZM2G025488 N 0.802
B9HG69_POPTR Populus trichocarpa POPTR_0007s15150 N 0.802
SB07G024500 Sorghum bicolor Sb07g024500 N 0.802
cassava42992.valid.m1 Manihot esculenta cassava42992.valid.m1 N 0.791
MDP0000248088 Malus x domestica MDP0000248088 N 0.791
cassava6538.valid.m1 Manihot esculenta cassava6538.valid.m1 N 0.791
MDP0000552419 Malus x domestica MDP0000552419 N 0.791
29929.m004643 Ricinus communis 29929.m004643 N 0.791
cassava42993.valid.m1 Manihot esculenta cassava42993.valid.m1 N 0.791
Glyma07g00280.1 Glycine max Glyma07g00280.1 N 0.791
GSVIVG00017649001 Vitis vinifera GSVIVG00017649001 N 0.791
cassava12061.valid.m1 Manihot esculenta cassava12061.valid.m1 N 0.791
BRADI3G42640 Brachypodium distachyon BRADI3G42640 N 0.791
BGIOSIBCE026930 Oryza indica BGIOSIBCE026930 N 0.780
ppa018635m Prunus persica ppa018635m N 0.780
Glyma08g24210.1 Glycine max Glyma08g24210.1 N 0.780
SB07G006330 Sorghum bicolor Sb07g006330 N 0.780
LOC_Os08g12760 Oryza sativa LOC_Os08g12760 N 0.780
BRADI3G18190 Brachypodium distachyon BRADI3G18190 N 0.769
Glyma15g14490.1 Glycine max Glyma15g14490.1 N 0.769
Glyma17g04270.1 Glycine max Glyma17g04270.1 N 0.769
GRMZM2G442195 Zea mays GRMZM2G442195 N 0.769
LOC_Os04g51940 Oryza sativa LOC_Os04g51940 N 0.769
MDP0000132385 Malus x domestica MDP0000132385 N 0.769
MDP0000306387 Malus x domestica MDP0000306387 N 0.769
BRADI2G46590 Brachypodium distachyon BRADI2G46590 N 0.758
B9HII9_POPTR Populus trichocarpa POPTR_0008s09960 N 0.758
29889.m003364 Ricinus communis 29889.m003364 N 0.758
BGIOSIBCE003171 Oryza indica BGIOSIBCE003171 N 0.758
GSVIVG00036696001 Vitis vinifera GSVIVG00036696001 N 0.758
LOC_Os03g53670 Oryza sativa LOC_Os03g53670 N 0.758
Glyma09g03590.1 Glycine max Glyma09g03590.1 N 0.758
LOC_Os01g48790 Oryza sativa LOC_Os01g48790 N 0.758
LOC_Os03g20180 Oryza sativa LOC_Os03g20180 N 0.758
GSVIVG00010494001 Vitis vinifera GSVIVG00010494001 N 0.758
XM_002894050.1 Arabidopsis lyrata fgenesh2_kg.1__3903__AT1G48110.2 N 0.758
BGIOSIBCE010884 Oryza indica BGIOSIBCE010884 N 0.758
MDP0000286471 Malus x domestica MDP0000286471 N 0.758
MDP0000299155 Malus x domestica MDP0000299155 N 0.758
MDP0000231231 Malus x domestica MDP0000231231 N 0.758
MDP0000171737 Malus x domestica MDP0000171737 N 0.758
chr6.LjT36O06.80.nd Lotus japonicus chr6.LjT36O06.80.nd N 0.758
ppa003664m Prunus persica ppa003664m N 0.758
Medtr8g134440 Medicago truncatula Medtr8g134440 N 0.758
ECT7 Arabidopsis thaliana AT1G48110-TAIR-G N 0.758
SB06G027960 Sorghum bicolor Sb06g027960 N 0.747
cassava17771.valid.m1 Manihot esculenta cassava17771.valid.m1 N 0.747
cassava17772.valid.m1 Manihot esculenta cassava17772.valid.m1 N 0.747
SB03G031190 Sorghum bicolor Sb03g031190 N 0.747
Medtr2g036990 Medicago truncatula Medtr2g036990 N 0.747
GRMZM2G127780 Zea mays GRMZM2G127780 N 0.747
GRMZM2G169116 Zea mays GRMZM2G169116 N 0.747
B9HI18_POPTR Populus trichocarpa POPTR_0008s08030 N 0.747
PDK_20s1352821g002 Phoenix dactylifera PDK_20s1352821g002 N 0.747
PDK_20s1308332g001 Phoenix dactylifera PDK_20s1308332g001 N 0.747
Glyma07g36110.1 Glycine max Glyma07g36110.1 N 0.747
PK01736.1 Cannabis sativa PK01736.1 N 0.747
GRMZM2G126338 Zea mays GRMZM2G126338 N 0.736
mgf014143m Mimulus guttatus mgf014143m N 0.736
BRADI1G64100 Brachypodium distachyon BRADI1G64100 N 0.736
B9HX84_POPTR Populus trichocarpa POPTR_0010s16210 N 0.736
SB01G008170 Sorghum bicolor Sb01g008170 N 0.736
29955.m001158 Ricinus communis 29955.m001158 N 0.736
PK23104.1 Cannabis sativa PK23104.1 N 0.736
mgf015583m Mimulus guttatus mgf015583m N 0.736
Glyma15g41960.1 Glycine max Glyma15g41960.1 N 0.736
PDK_20s1631851g001 Phoenix dactylifera PDK_20s1631851g001 N 0.725
XM_002885156.1 Arabidopsis lyrata Al_scaffold_0003_1823 N 0.725
B9HYD4_POPTR Populus trichocarpa POPTR_0010s18300 N 0.725
mgf009938m Mimulus guttatus mgf009938m N 0.725
XM_002887730.1 Arabidopsis lyrata fgenesh2_kg.2__2224__AT1G79270.1 N 0.725
XM_002893450.1 Arabidopsis lyrata fgenesh2_kg.1__2951__AT1G27960.1 N 0.725
Glyma08g17240.1 Glycine max Glyma08g17240.1 N 0.725
BGIOSIBCE016517 Oryza indica BGIOSIBCE016517 N 0.725
PDK_20s1441394g001 Phoenix dactylifera PDK_20s1441394g001 N 0.725
BRADI4G02150 Brachypodium distachyon BRADI4G02150 N 0.725
29950.m001140 Ricinus communis 29950.m001140 N 0.725
mgf017987m Mimulus guttatus mgf017987m N 0.725
gw1.181.55.1 Physcomitrella patens gw1.181.55.1 N 0.725
mgf013853m Mimulus guttatus mgf013853m N 0.725
Medtr2g085380 Medicago truncatula Medtr2g085380 N 0.725
ECT8 Arabidopsis thaliana AT1G79270-TAIR-G N 0.725
ECT6 Arabidopsis thaliana AT3G17330-TAIR-G N 0.725
PK02315.1 Cannabis sativa PK02315.1 N 0.725
cassava35659.valid.m1 Manihot esculenta cassava35659.valid.m1 N 0.714
cassava35657.valid.m1 Manihot esculenta cassava35657.valid.m1 N 0.714
gw1.198.66.1 Physcomitrella patens gw1.198.66.1 N 0.714
cassava35658.valid.m1 Manihot esculenta cassava35658.valid.m1 N 0.714
cassava35660.valid.m1 Manihot esculenta cassava35660.valid.m1 N 0.714
cassava35661.valid.m1 Manihot esculenta cassava35661.valid.m1 N 0.714
mgf013935m Mimulus guttatus mgf013935m N 0.714
GRMZM2G330019 Zea mays GRMZM2G330019 N 0.714
BRADI2G12380 Brachypodium distachyon BRADI2G12380 N 0.714
cassava35665.valid.m1 Manihot esculenta cassava35665.valid.m1 N 0.714
cassava38867.m1 Manihot esculenta cassava38867.m1 N 0.714
cassava35666.valid.m1 Manihot esculenta cassava35666.valid.m1 N 0.714
ECT9 Arabidopsis thaliana AT1G27960-TAIR-G N 0.714
Sb01g046550 Sorghum bicolor Sb01g046550 N 0.714
cassava35667.valid.m1 Manihot esculenta cassava35667.valid.m1 N 0.714
cassava38866.m1 Manihot esculenta cassava38866.m1 N 0.714
cassava35662.valid.m1 Manihot esculenta cassava35662.valid.m1 N 0.714
LjSGA_032005.1 Lotus japonicus LjSGA_032005.1 N 0.714
cassava35663.valid.m1 Manihot esculenta cassava35663.valid.m1 N 0.714
MDP0000124048 Malus x domestica MDP0000124048 N 0.714
cassava30727.valid.m1 Manihot esculenta cassava30727.valid.m1 N 0.703
cassava30728.valid.m1 Manihot esculenta cassava30728.valid.m1 N 0.703
cassava20495.m1 Manihot esculenta cassava20495.m1 N 0.703
cassava30729.valid.m1 Manihot esculenta cassava30729.valid.m1 N 0.703
BRADI1G74560 Brachypodium distachyon BRADI1G74560 N 0.703
ECT3 Arabidopsis thaliana AT5G61020-TAIR-G N 0.703
BGIOSIBCE009738 Oryza indica BGIOSIBCE009738 N 0.703
BRADI1G05970 Brachypodium distachyon BRADI1G05970 N 0.703
PK26094.1 Cannabis sativa PK26094.1 N 0.703
MDP0000488588 Malus x domestica MDP0000488588 N 0.703
gw1.1.157.1 Selaginella moellendorfii gw1.1.157.1 N 0.703
GRMZM2G076062 Zea mays GRMZM2G076062 N 0.703
GRMZM2G144726 Zea mays GRMZM2G144726 N 0.703
GSVIVG00025494001 Vitis vinifera GSVIVG00025494001 N 0.703
LOC_Os03g06240 Oryza sativa LOC_Os03g06240 N 0.703
cassava18203.valid.m1 Manihot esculenta cassava18203.valid.m1 N 0.703
cassava18204.valid.m1 Manihot esculenta cassava18204.valid.m1 N 0.703
cassava18205.valid.m1 Manihot esculenta cassava18205.valid.m1 N 0.703
cassava12389.valid.m1 Manihot esculenta cassava12389.valid.m1 N 0.703
cassava12388.valid.m1 Manihot esculenta cassava12388.valid.m1 N 0.703
A9PED2_POPTR Populus trichocarpa POPTR_0019s04990 N 0.703
cassava12386.valid.m1 Manihot esculenta cassava12386.valid.m1 N 0.703
cassava12387.valid.m1 Manihot esculenta cassava12387.valid.m1 N 0.703
cassava20494.m1 Manihot esculenta cassava20494.m1 N 0.703