CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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MDP0000248088
(
Malus x domestica
)
YTH
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF04146 (YTH)
IPR007275
MDP0000248088
T62534_0.6
Superfamily (2011-Oct-26)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
MDP0000248088
YTH
563
653
LFFSVNASAQFCGVAEMIGPVDFDKSLDYWQQDKWSGQFPVKWHMIKDVPNSQFRHIILENNDNKPVTNSRDTQEVKLEQGIELLNIFKNY
Links
Other
YTH
family RBPs
Other
Malus x domestica
RBPs
186 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
MDP0000552419
Malus x domestica
MDP0000552419
N
1.000
MDP0000405927
Malus x domestica
MDP0000405927
N
0.989
MDP0000617859
Malus x domestica
MDP0000617859
N
0.989
MDP0000287088
Malus x domestica
MDP0000287088
N
0.989
ppa002483m
Prunus persica
ppa002483m
N
0.967
ppa002588m
Prunus persica
ppa002588m
N
0.967
cassava1917.valid.m1
Manihot esculenta
cassava1917.valid.m1
N
0.934
cassava1916.valid.m1
Manihot esculenta
cassava1916.valid.m1
N
0.934
cassava1918.valid.m1
Manihot esculenta
cassava1918.valid.m1
N
0.934
B9HG69_POPTR
Populus trichocarpa
POPTR_0007s15150
N
0.934
GSVIVG00029460001
Vitis vinifera
GSVIVG00029460001
N
0.934
PK17832.1
Cannabis sativa
PK17832.1
N
0.923
B9N5D4_POPTR
Populus trichocarpa
POPTR_0014s00320
N
0.923
XM_002882758.1
Arabidopsis lyrata
fgenesh2_kg.3__1376__AT3G13060.2
N
0.912
ECT5
Arabidopsis thaliana
AT3G13060-TAIR-G
N
0.912
Medtr4g163280
Medicago truncatula
Medtr4g163280
N
0.901
chr3.CM0292.380.nc
Lotus japonicus
chr3.CM0292.380.nc
N
0.901
29929.m004643
Ricinus communis
29929.m004643
N
0.890
Glyma07g00280.1
Glycine max
Glyma07g00280.1
N
0.890
Glyma08g24210.1
Glycine max
Glyma08g24210.1
N
0.890
GSVIVG00010494001
Vitis vinifera
GSVIVG00010494001
N
0.879
cassava6538.valid.m1
Manihot esculenta
cassava6538.valid.m1
N
0.879
B9GMK5_POPTR
Populus trichocarpa
POPTR_0001s13870
N
0.879
cassava12061.valid.m1
Manihot esculenta
cassava12061.valid.m1
N
0.879
SB07G024500
Sorghum bicolor
Sb07g024500
N
0.868
GRMZM2G025488
Zea mays
GRMZM2G025488
N
0.868
BGIOSIBCE026930
Oryza indica
BGIOSIBCE026930
N
0.857
BGIOSIBCE028829
Oryza indica
BGIOSIBCE028829
N
0.857
PK01736.1
Cannabis sativa
PK01736.1
N
0.857
LOC_Os08g44200
Oryza sativa
LOC_Os08g44200
N
0.857
LOC_Os08g12760
Oryza sativa
LOC_Os08g12760
N
0.857
GRMZM2G442195
Zea mays
GRMZM2G442195
N
0.846
SB07G006330
Sorghum bicolor
Sb07g006330
N
0.846
LOC_Os04g51940
Oryza sativa
LOC_Os04g51940
N
0.835
ppa003664m
Prunus persica
ppa003664m
N
0.835
GSVIVG00036696001
Vitis vinifera
GSVIVG00036696001
N
0.835
PK23104.1
Cannabis sativa
PK23104.1
N
0.835
MDP0000171737
Malus x domestica
MDP0000171737
N
0.835
BRADI3G18190
Brachypodium distachyon
BRADI3G18190
N
0.824
mgf019821m
Mimulus guttatus
mgf019821m
N
0.824
BRADI3G42640
Brachypodium distachyon
BRADI3G42640
N
0.824
MDP0000231231
Malus x domestica
MDP0000231231
N
0.824
MDP0000286471
Malus x domestica
MDP0000286471
N
0.824
Medtr2g085380
Medicago truncatula
Medtr2g085380
N
0.813
B9HI18_POPTR
Populus trichocarpa
POPTR_0008s08030
N
0.813
ECT8
Arabidopsis thaliana
AT1G79270-TAIR-G
N
0.813
29955.m001158
Ricinus communis
29955.m001158
N
0.813
PDK_20s1441394g001
Phoenix dactylifera
PDK_20s1441394g001
N
0.813
gw1.181.55.1
Physcomitrella patens
gw1.181.55.1
N
0.813
B9HYD4_POPTR
Populus trichocarpa
POPTR_0010s18300
N
0.802
XM_002887730.1
Arabidopsis lyrata
fgenesh2_kg.2__2224__AT1G79270.1
N
0.802
B9N817_POPTR
Populus trichocarpa
POPTR_0018s14670
N
0.802
29890.m000285
Ricinus communis
29890.m000285
N
0.802
BGIOSIBCE003171
Oryza indica
BGIOSIBCE003171
N
0.802
Glyma08g17240.1
Glycine max
Glyma08g17240.1
N
0.802
Glyma15g41960.1
Glycine max
Glyma15g41960.1
N
0.802
LOC_Os01g48790
Oryza sativa
LOC_Os01g48790
N
0.802
cassava42992.valid.m1
Manihot esculenta
cassava42992.valid.m1
N
0.802
BRADI2G46590
Brachypodium distachyon
BRADI2G46590
N
0.802
cassava42993.valid.m1
Manihot esculenta
cassava42993.valid.m1
N
0.802
GSVIVG00017649001
Vitis vinifera
GSVIVG00017649001
N
0.802
LjSGA_032005.1
Lotus japonicus
LjSGA_032005.1
N
0.802
SB03G031190
Sorghum bicolor
Sb03g031190
N
0.791
PDK_20s1631851g001
Phoenix dactylifera
PDK_20s1631851g001
N
0.791
Glyma17g04270.1
Glycine max
Glyma17g04270.1
N
0.791
gw1.198.66.1
Physcomitrella patens
gw1.198.66.1
N
0.791
Cucsa.356240
Cucumis sativus
Cucsa.356240
N
0.791
GRMZM2G169116
Zea mays
GRMZM2G169116
N
0.791
cassava17771.valid.m1
Manihot esculenta
cassava17771.valid.m1
N
0.791
ppa002677m
Prunus persica
ppa002677m
N
0.791
SB06G027960
Sorghum bicolor
Sb06g027960
N
0.791
cassava17772.valid.m1
Manihot esculenta
cassava17772.valid.m1
N
0.791
BGIOSIBCE016517
Oryza indica
BGIOSIBCE016517
N
0.791
GSVIVG00032236001
Vitis vinifera
GSVIVG00032236001
N
0.791
GRMZM2G127780
Zea mays
GRMZM2G127780
N
0.780
PDK_20s1352821g002
Phoenix dactylifera
PDK_20s1352821g002
N
0.780
Medtr8g134440
Medicago truncatula
Medtr8g134440
N
0.780
PK05579.1
Cannabis sativa
PK05579.1
N
0.780
29889.m003364
Ricinus communis
29889.m003364
N
0.780
Medtr2g036990
Medicago truncatula
Medtr2g036990
N
0.769
MDP0000306387
Malus x domestica
MDP0000306387
N
0.769
MDP0000132385
Malus x domestica
MDP0000132385
N
0.769
XM_002894050.1
Arabidopsis lyrata
fgenesh2_kg.1__3903__AT1G48110.2
N
0.769
ECT7
Arabidopsis thaliana
AT1G48110-TAIR-G
N
0.769
chr6.LjT36O06.80.nd
Lotus japonicus
chr6.LjT36O06.80.nd
N
0.769
gw1.1.157.1
Selaginella moellendorfii
gw1.1.157.1
N
0.769
Glyma07g36110.1
Glycine max
Glyma07g36110.1
N
0.769
ppa018635m
Prunus persica
ppa018635m
N
0.769
B9HBC4_POPTR
Populus trichocarpa
POPTR_0006s07970
N
0.769
GSVIVG00033395001
Vitis vinifera
GSVIVG00033395001
N
0.758
MDP0000189157
Malus x domestica
MDP0000189157
N
0.758
ECT10
Arabidopsis thaliana
AT5G58190-TAIR-G
N
0.758
B9HII9_POPTR
Populus trichocarpa
POPTR_0008s09960
N
0.758
B9HX84_POPTR
Populus trichocarpa
POPTR_0010s16210
N
0.758
XM_002885156.1
Arabidopsis lyrata
Al_scaffold_0003_1823
N
0.758
XM_002893450.1
Arabidopsis lyrata
fgenesh2_kg.1__2951__AT1G27960.1
N
0.758
mgf017987m
Mimulus guttatus
mgf017987m
N
0.758
XM_002864508.1
Arabidopsis lyrata
fgenesh1_pm.C_scaffold_8001450
N
0.758
Cucsa.142200
Cucumis sativus
Cucsa.142200
N
0.747
mgf015583m
Mimulus guttatus
mgf015583m
N
0.747
BRADI1G64100
Brachypodium distachyon
BRADI1G64100
N
0.747
LOC_Os03g20180
Oryza sativa
LOC_Os03g20180
N
0.747
Glyma09g03590.1
Glycine max
Glyma09g03590.1
N
0.747
PDK_20s1308332g001
Phoenix dactylifera
PDK_20s1308332g001
N
0.747
Glyma15g14490.1
Glycine max
Glyma15g14490.1
N
0.747
GRMZM2G126338
Zea mays
GRMZM2G126338
N
0.747
LOC_Os03g53670
Oryza sativa
LOC_Os03g53670
N
0.747
MDP0000256033
Malus x domestica
MDP0000256033
N
0.747
ECT9
Arabidopsis thaliana
AT1G27960-TAIR-G
N
0.747
mgf014143m
Mimulus guttatus
mgf014143m
N
0.747
BGIOSIBCE010884
Oryza indica
BGIOSIBCE010884
N
0.747
PK02315.1
Cannabis sativa
PK02315.1
N
0.747
Cucsa.135220
Cucumis sativus
Cucsa.135220
N
0.747
SB01G008170
Sorghum bicolor
Sb01g008170
N
0.747
ECT6
Arabidopsis thaliana
AT3G17330-TAIR-G
N
0.747
MDP0000488248
Malus x domestica
MDP0000488248
N
0.736
mgf001716m
Mimulus guttatus
mgf001716m
N
0.736
mgf014829m
Mimulus guttatus
mgf014829m
N
0.736
B9GXX7_POPTR
Populus trichocarpa
POPTR_0003s20840
N
0.736
PK26094.1
Cannabis sativa
PK26094.1
N
0.736
mgf013853m
Mimulus guttatus
mgf013853m
N
0.725
29765.m000746
Ricinus communis
29765.m000746
N
0.725
PK23716.1
Cannabis sativa
PK23716.1
N
0.725
Glyma08g13130.1
Glycine max
Glyma08g13130.1
N
0.725
Medtr4g136900
Medicago truncatula
Medtr4g136900
N
0.725
BRADI4G02150
Brachypodium distachyon
BRADI4G02150
N
0.725
cassava22612.valid.m1
Manihot esculenta
cassava22612.valid.m1
N
0.725
ECT3
Arabidopsis thaliana
AT5G61020-TAIR-G
N
0.725
ppa003557m
Prunus persica
ppa003557m
N
0.725
mgf009938m
Mimulus guttatus
mgf009938m
N
0.725
Glyma05g30020.1
Glycine max
Glyma05g30020.1
N
0.725
ECT4
Arabidopsis thaliana
AT1G55500-TAIR-G
N
0.714
mgf013935m
Mimulus guttatus
mgf013935m
N
0.714
BRADI1G05970
Brachypodium distachyon
BRADI1G05970
N
0.714
mgf019846m
Mimulus guttatus
mgf019846m
N
0.714
MDP0000718677
Malus x domestica
MDP0000718677
N
0.714
BRADI1G74560
Brachypodium distachyon
BRADI1G74560
N
0.714
cassava20494.m1
Manihot esculenta
cassava20494.m1
N
0.714
MDP0000129009
Malus x domestica
MDP0000129009
N
0.714
cassava13322.valid.m1
Manihot esculenta
cassava13322.valid.m1
N
0.714
cassava13323.valid.m1
Manihot esculenta
cassava13323.valid.m1
N
0.714
cassava13324.valid.m1
Manihot esculenta
cassava13324.valid.m1
N
0.714
XM_002884922.1
Arabidopsis lyrata
fgenesh2_kg.3__1434__AT3G13460.1
N
0.714
XM_002866364.1
Arabidopsis lyrata
fgenesh2_kg.8__2071__AT5G61020.1
N
0.714
ECT2
Arabidopsis thaliana
AT3G13460-TAIR-G
N
0.714
Sb01g046550
Sorghum bicolor
Sb01g046550
N
0.714
SB02G003990
Sorghum bicolor
Sb02g003990
N
0.714
GSVIVG00025494001
Vitis vinifera
GSVIVG00025494001
N
0.714
XM_002891791.1
Arabidopsis lyrata
fgenesh1_pg.C_scaffold_1004195
N
0.714
cassava14932.m1
Manihot esculenta
cassava14932.m1
N
0.714
GRMZM2G330019
Zea mays
GRMZM2G330019
N
0.714
GRMZM2G144726
Zea mays
GRMZM2G144726
N
0.714
GRMZM2G076062
Zea mays
GRMZM2G076062
N
0.714
ECT1
Arabidopsis thaliana
AT3G03950-TAIR-G
N
0.714
cassava20495.m1
Manihot esculenta
cassava20495.m1
N
0.714
cassava18205.valid.m1
Manihot esculenta
cassava18205.valid.m1
N
0.714
cassava18203.valid.m1
Manihot esculenta
cassava18203.valid.m1
N
0.714
cassava18204.valid.m1
Manihot esculenta
cassava18204.valid.m1
N
0.714
MDP0000488588
Malus x domestica
MDP0000488588
N
0.703
MDP0000124048
Malus x domestica
MDP0000124048
N
0.703
BGIOSIBCE009738
Oryza indica
BGIOSIBCE009738
N
0.703
cassava35663.valid.m1
Manihot esculenta
cassava35663.valid.m1
N
0.703
cassava30727.valid.m1
Manihot esculenta
cassava30727.valid.m1
N
0.703
cassava12389.valid.m1
Manihot esculenta
cassava12389.valid.m1
N
0.703
cassava30728.valid.m1
Manihot esculenta
cassava30728.valid.m1
N
0.703
cassava30729.valid.m1
Manihot esculenta
cassava30729.valid.m1
N
0.703
cassava35657.valid.m1
Manihot esculenta
cassava35657.valid.m1
N
0.703
cassava12388.valid.m1
Manihot esculenta
cassava12388.valid.m1
N
0.703
cassava12387.valid.m1
Manihot esculenta
cassava12387.valid.m1
N
0.703
LOC_Os07g07490
Oryza sativa
LOC_Os07g07490
N
0.703
LOC_Os03g06240
Oryza sativa
LOC_Os03g06240
N
0.703
XM_002882275.1
Arabidopsis lyrata
fgenesh2_kg.3__349__AT3G03950.3
N
0.703
cassava12386.valid.m1
Manihot esculenta
cassava12386.valid.m1
N
0.703
cassava35658.valid.m1
Manihot esculenta
cassava35658.valid.m1
N
0.703
cassava35659.valid.m1
Manihot esculenta
cassava35659.valid.m1
N
0.703
cassava38866.m1
Manihot esculenta
cassava38866.m1
N
0.703
cassava38867.m1
Manihot esculenta
cassava38867.m1
N
0.703
BRADI3G06027
Brachypodium distachyon
BRADI3G06027
N
0.703
Glyma16g04590.1
Glycine max
Glyma16g04590.1
N
0.703
cassava35667.valid.m1
Manihot esculenta
cassava35667.valid.m1
N
0.703
cassava35666.valid.m1
Manihot esculenta
cassava35666.valid.m1
N
0.703
cassava35660.valid.m1
Manihot esculenta
cassava35660.valid.m1
N
0.703
cassava35661.valid.m1
Manihot esculenta
cassava35661.valid.m1
N
0.703
cassava35662.valid.m1
Manihot esculenta
cassava35662.valid.m1
N
0.703
cassava35665.valid.m1
Manihot esculenta
cassava35665.valid.m1
N
0.703
BGIOSIBCE023845
Oryza indica
BGIOSIBCE023845
N
0.703