MDP0000248088 (Malus x domestica)
YTH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF04146 (YTH) IPR007275 MDP0000248088 T62534_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
MDP0000248088 YTH 563 653

Links

Other YTH family RBPs
Other Malus x domestica RBPs

186 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
MDP0000552419 Malus x domestica MDP0000552419 N 1.000
MDP0000405927 Malus x domestica MDP0000405927 N 0.989
MDP0000617859 Malus x domestica MDP0000617859 N 0.989
MDP0000287088 Malus x domestica MDP0000287088 N 0.989
ppa002483m Prunus persica ppa002483m N 0.967
ppa002588m Prunus persica ppa002588m N 0.967
cassava1917.valid.m1 Manihot esculenta cassava1917.valid.m1 N 0.934
cassava1916.valid.m1 Manihot esculenta cassava1916.valid.m1 N 0.934
cassava1918.valid.m1 Manihot esculenta cassava1918.valid.m1 N 0.934
B9HG69_POPTR Populus trichocarpa POPTR_0007s15150 N 0.934
GSVIVG00029460001 Vitis vinifera GSVIVG00029460001 N 0.934
PK17832.1 Cannabis sativa PK17832.1 N 0.923
B9N5D4_POPTR Populus trichocarpa POPTR_0014s00320 N 0.923
XM_002882758.1 Arabidopsis lyrata fgenesh2_kg.3__1376__AT3G13060.2 N 0.912
ECT5 Arabidopsis thaliana AT3G13060-TAIR-G N 0.912
Medtr4g163280 Medicago truncatula Medtr4g163280 N 0.901
chr3.CM0292.380.nc Lotus japonicus chr3.CM0292.380.nc N 0.901
29929.m004643 Ricinus communis 29929.m004643 N 0.890
Glyma07g00280.1 Glycine max Glyma07g00280.1 N 0.890
Glyma08g24210.1 Glycine max Glyma08g24210.1 N 0.890
GSVIVG00010494001 Vitis vinifera GSVIVG00010494001 N 0.879
cassava6538.valid.m1 Manihot esculenta cassava6538.valid.m1 N 0.879
B9GMK5_POPTR Populus trichocarpa POPTR_0001s13870 N 0.879
cassava12061.valid.m1 Manihot esculenta cassava12061.valid.m1 N 0.879
SB07G024500 Sorghum bicolor Sb07g024500 N 0.868
GRMZM2G025488 Zea mays GRMZM2G025488 N 0.868
BGIOSIBCE026930 Oryza indica BGIOSIBCE026930 N 0.857
BGIOSIBCE028829 Oryza indica BGIOSIBCE028829 N 0.857
PK01736.1 Cannabis sativa PK01736.1 N 0.857
LOC_Os08g44200 Oryza sativa LOC_Os08g44200 N 0.857
LOC_Os08g12760 Oryza sativa LOC_Os08g12760 N 0.857
GRMZM2G442195 Zea mays GRMZM2G442195 N 0.846
SB07G006330 Sorghum bicolor Sb07g006330 N 0.846
LOC_Os04g51940 Oryza sativa LOC_Os04g51940 N 0.835
ppa003664m Prunus persica ppa003664m N 0.835
GSVIVG00036696001 Vitis vinifera GSVIVG00036696001 N 0.835
PK23104.1 Cannabis sativa PK23104.1 N 0.835
MDP0000171737 Malus x domestica MDP0000171737 N 0.835
BRADI3G18190 Brachypodium distachyon BRADI3G18190 N 0.824
mgf019821m Mimulus guttatus mgf019821m N 0.824
BRADI3G42640 Brachypodium distachyon BRADI3G42640 N 0.824
MDP0000231231 Malus x domestica MDP0000231231 N 0.824
MDP0000286471 Malus x domestica MDP0000286471 N 0.824
Medtr2g085380 Medicago truncatula Medtr2g085380 N 0.813
B9HI18_POPTR Populus trichocarpa POPTR_0008s08030 N 0.813
ECT8 Arabidopsis thaliana AT1G79270-TAIR-G N 0.813
29955.m001158 Ricinus communis 29955.m001158 N 0.813
PDK_20s1441394g001 Phoenix dactylifera PDK_20s1441394g001 N 0.813
gw1.181.55.1 Physcomitrella patens gw1.181.55.1 N 0.813
B9HYD4_POPTR Populus trichocarpa POPTR_0010s18300 N 0.802
XM_002887730.1 Arabidopsis lyrata fgenesh2_kg.2__2224__AT1G79270.1 N 0.802
B9N817_POPTR Populus trichocarpa POPTR_0018s14670 N 0.802
29890.m000285 Ricinus communis 29890.m000285 N 0.802
BGIOSIBCE003171 Oryza indica BGIOSIBCE003171 N 0.802
Glyma08g17240.1 Glycine max Glyma08g17240.1 N 0.802
Glyma15g41960.1 Glycine max Glyma15g41960.1 N 0.802
LOC_Os01g48790 Oryza sativa LOC_Os01g48790 N 0.802
cassava42992.valid.m1 Manihot esculenta cassava42992.valid.m1 N 0.802
BRADI2G46590 Brachypodium distachyon BRADI2G46590 N 0.802
cassava42993.valid.m1 Manihot esculenta cassava42993.valid.m1 N 0.802
GSVIVG00017649001 Vitis vinifera GSVIVG00017649001 N 0.802
LjSGA_032005.1 Lotus japonicus LjSGA_032005.1 N 0.802
SB03G031190 Sorghum bicolor Sb03g031190 N 0.791
PDK_20s1631851g001 Phoenix dactylifera PDK_20s1631851g001 N 0.791
Glyma17g04270.1 Glycine max Glyma17g04270.1 N 0.791
gw1.198.66.1 Physcomitrella patens gw1.198.66.1 N 0.791
Cucsa.356240 Cucumis sativus Cucsa.356240 N 0.791
GRMZM2G169116 Zea mays GRMZM2G169116 N 0.791
cassava17771.valid.m1 Manihot esculenta cassava17771.valid.m1 N 0.791
ppa002677m Prunus persica ppa002677m N 0.791
SB06G027960 Sorghum bicolor Sb06g027960 N 0.791
cassava17772.valid.m1 Manihot esculenta cassava17772.valid.m1 N 0.791
BGIOSIBCE016517 Oryza indica BGIOSIBCE016517 N 0.791
GSVIVG00032236001 Vitis vinifera GSVIVG00032236001 N 0.791
GRMZM2G127780 Zea mays GRMZM2G127780 N 0.780
PDK_20s1352821g002 Phoenix dactylifera PDK_20s1352821g002 N 0.780
Medtr8g134440 Medicago truncatula Medtr8g134440 N 0.780
PK05579.1 Cannabis sativa PK05579.1 N 0.780
29889.m003364 Ricinus communis 29889.m003364 N 0.780
Medtr2g036990 Medicago truncatula Medtr2g036990 N 0.769
MDP0000306387 Malus x domestica MDP0000306387 N 0.769
MDP0000132385 Malus x domestica MDP0000132385 N 0.769
XM_002894050.1 Arabidopsis lyrata fgenesh2_kg.1__3903__AT1G48110.2 N 0.769
ECT7 Arabidopsis thaliana AT1G48110-TAIR-G N 0.769
chr6.LjT36O06.80.nd Lotus japonicus chr6.LjT36O06.80.nd N 0.769
gw1.1.157.1 Selaginella moellendorfii gw1.1.157.1 N 0.769
Glyma07g36110.1 Glycine max Glyma07g36110.1 N 0.769
ppa018635m Prunus persica ppa018635m N 0.769
B9HBC4_POPTR Populus trichocarpa POPTR_0006s07970 N 0.769
GSVIVG00033395001 Vitis vinifera GSVIVG00033395001 N 0.758
MDP0000189157 Malus x domestica MDP0000189157 N 0.758
ECT10 Arabidopsis thaliana AT5G58190-TAIR-G N 0.758
B9HII9_POPTR Populus trichocarpa POPTR_0008s09960 N 0.758
B9HX84_POPTR Populus trichocarpa POPTR_0010s16210 N 0.758
XM_002885156.1 Arabidopsis lyrata Al_scaffold_0003_1823 N 0.758
XM_002893450.1 Arabidopsis lyrata fgenesh2_kg.1__2951__AT1G27960.1 N 0.758
mgf017987m Mimulus guttatus mgf017987m N 0.758
XM_002864508.1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_8001450 N 0.758
Cucsa.142200 Cucumis sativus Cucsa.142200 N 0.747
mgf015583m Mimulus guttatus mgf015583m N 0.747
BRADI1G64100 Brachypodium distachyon BRADI1G64100 N 0.747
LOC_Os03g20180 Oryza sativa LOC_Os03g20180 N 0.747
Glyma09g03590.1 Glycine max Glyma09g03590.1 N 0.747
PDK_20s1308332g001 Phoenix dactylifera PDK_20s1308332g001 N 0.747
Glyma15g14490.1 Glycine max Glyma15g14490.1 N 0.747
GRMZM2G126338 Zea mays GRMZM2G126338 N 0.747
LOC_Os03g53670 Oryza sativa LOC_Os03g53670 N 0.747
MDP0000256033 Malus x domestica MDP0000256033 N 0.747
ECT9 Arabidopsis thaliana AT1G27960-TAIR-G N 0.747
mgf014143m Mimulus guttatus mgf014143m N 0.747
BGIOSIBCE010884 Oryza indica BGIOSIBCE010884 N 0.747
PK02315.1 Cannabis sativa PK02315.1 N 0.747
Cucsa.135220 Cucumis sativus Cucsa.135220 N 0.747
SB01G008170 Sorghum bicolor Sb01g008170 N 0.747
ECT6 Arabidopsis thaliana AT3G17330-TAIR-G N 0.747
MDP0000488248 Malus x domestica MDP0000488248 N 0.736
mgf001716m Mimulus guttatus mgf001716m N 0.736
mgf014829m Mimulus guttatus mgf014829m N 0.736
B9GXX7_POPTR Populus trichocarpa POPTR_0003s20840 N 0.736
PK26094.1 Cannabis sativa PK26094.1 N 0.736
mgf013853m Mimulus guttatus mgf013853m N 0.725
29765.m000746 Ricinus communis 29765.m000746 N 0.725
PK23716.1 Cannabis sativa PK23716.1 N 0.725
Glyma08g13130.1 Glycine max Glyma08g13130.1 N 0.725
Medtr4g136900 Medicago truncatula Medtr4g136900 N 0.725
BRADI4G02150 Brachypodium distachyon BRADI4G02150 N 0.725
cassava22612.valid.m1 Manihot esculenta cassava22612.valid.m1 N 0.725
ECT3 Arabidopsis thaliana AT5G61020-TAIR-G N 0.725
ppa003557m Prunus persica ppa003557m N 0.725
mgf009938m Mimulus guttatus mgf009938m N 0.725
Glyma05g30020.1 Glycine max Glyma05g30020.1 N 0.725
ECT4 Arabidopsis thaliana AT1G55500-TAIR-G N 0.714
mgf013935m Mimulus guttatus mgf013935m N 0.714
BRADI1G05970 Brachypodium distachyon BRADI1G05970 N 0.714
mgf019846m Mimulus guttatus mgf019846m N 0.714
MDP0000718677 Malus x domestica MDP0000718677 N 0.714
BRADI1G74560 Brachypodium distachyon BRADI1G74560 N 0.714
cassava20494.m1 Manihot esculenta cassava20494.m1 N 0.714
MDP0000129009 Malus x domestica MDP0000129009 N 0.714
cassava13322.valid.m1 Manihot esculenta cassava13322.valid.m1 N 0.714
cassava13323.valid.m1 Manihot esculenta cassava13323.valid.m1 N 0.714
cassava13324.valid.m1 Manihot esculenta cassava13324.valid.m1 N 0.714
XM_002884922.1 Arabidopsis lyrata fgenesh2_kg.3__1434__AT3G13460.1 N 0.714
XM_002866364.1 Arabidopsis lyrata fgenesh2_kg.8__2071__AT5G61020.1 N 0.714
ECT2 Arabidopsis thaliana AT3G13460-TAIR-G N 0.714
Sb01g046550 Sorghum bicolor Sb01g046550 N 0.714
SB02G003990 Sorghum bicolor Sb02g003990 N 0.714
GSVIVG00025494001 Vitis vinifera GSVIVG00025494001 N 0.714
XM_002891791.1 Arabidopsis lyrata fgenesh1_pg.C_scaffold_1004195 N 0.714
cassava14932.m1 Manihot esculenta cassava14932.m1 N 0.714
GRMZM2G330019 Zea mays GRMZM2G330019 N 0.714
GRMZM2G144726 Zea mays GRMZM2G144726 N 0.714
GRMZM2G076062 Zea mays GRMZM2G076062 N 0.714
ECT1 Arabidopsis thaliana AT3G03950-TAIR-G N 0.714
cassava20495.m1 Manihot esculenta cassava20495.m1 N 0.714
cassava18205.valid.m1 Manihot esculenta cassava18205.valid.m1 N 0.714
cassava18203.valid.m1 Manihot esculenta cassava18203.valid.m1 N 0.714
cassava18204.valid.m1 Manihot esculenta cassava18204.valid.m1 N 0.714
MDP0000488588 Malus x domestica MDP0000488588 N 0.703
MDP0000124048 Malus x domestica MDP0000124048 N 0.703
BGIOSIBCE009738 Oryza indica BGIOSIBCE009738 N 0.703
cassava35663.valid.m1 Manihot esculenta cassava35663.valid.m1 N 0.703
cassava30727.valid.m1 Manihot esculenta cassava30727.valid.m1 N 0.703
cassava12389.valid.m1 Manihot esculenta cassava12389.valid.m1 N 0.703
cassava30728.valid.m1 Manihot esculenta cassava30728.valid.m1 N 0.703
cassava30729.valid.m1 Manihot esculenta cassava30729.valid.m1 N 0.703
cassava35657.valid.m1 Manihot esculenta cassava35657.valid.m1 N 0.703
cassava12388.valid.m1 Manihot esculenta cassava12388.valid.m1 N 0.703
cassava12387.valid.m1 Manihot esculenta cassava12387.valid.m1 N 0.703
LOC_Os07g07490 Oryza sativa LOC_Os07g07490 N 0.703
LOC_Os03g06240 Oryza sativa LOC_Os03g06240 N 0.703
XM_002882275.1 Arabidopsis lyrata fgenesh2_kg.3__349__AT3G03950.3 N 0.703
cassava12386.valid.m1 Manihot esculenta cassava12386.valid.m1 N 0.703
cassava35658.valid.m1 Manihot esculenta cassava35658.valid.m1 N 0.703
cassava35659.valid.m1 Manihot esculenta cassava35659.valid.m1 N 0.703
cassava38866.m1 Manihot esculenta cassava38866.m1 N 0.703
cassava38867.m1 Manihot esculenta cassava38867.m1 N 0.703
BRADI3G06027 Brachypodium distachyon BRADI3G06027 N 0.703
Glyma16g04590.1 Glycine max Glyma16g04590.1 N 0.703
cassava35667.valid.m1 Manihot esculenta cassava35667.valid.m1 N 0.703
cassava35666.valid.m1 Manihot esculenta cassava35666.valid.m1 N 0.703
cassava35660.valid.m1 Manihot esculenta cassava35660.valid.m1 N 0.703
cassava35661.valid.m1 Manihot esculenta cassava35661.valid.m1 N 0.703
cassava35662.valid.m1 Manihot esculenta cassava35662.valid.m1 N 0.703
cassava35665.valid.m1 Manihot esculenta cassava35665.valid.m1 N 0.703
BGIOSIBCE023845 Oryza indica BGIOSIBCE023845 N 0.703