XM_002893450.1 (Arabidopsis lyrata)
YTH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF04146 (YTH) IPR007275 fgenesh2_kg.1__2951__AT1G27960.1 T62204_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
fgenesh2_kg.1__2951__AT1G27960.1 YTH 397 487

Links

Other YTH family RBPs
Other Arabidopsis lyrata RBPs

69 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ECT9 Arabidopsis thaliana AT1G27960-TAIR-G N 0.989
XM_002882758.1 Arabidopsis lyrata fgenesh2_kg.3__1376__AT3G13060.2 N 0.824
ECT5 Arabidopsis thaliana AT3G13060-TAIR-G N 0.824
SB07G024500 Sorghum bicolor Sb07g024500 N 0.791
29890.m000285 Ricinus communis 29890.m000285 N 0.791
cassava1916.valid.m1 Manihot esculenta cassava1916.valid.m1 N 0.791
B9N5D4_POPTR Populus trichocarpa POPTR_0014s00320 N 0.791
cassava1918.valid.m1 Manihot esculenta cassava1918.valid.m1 N 0.791
BGIOSIBCE028829 Oryza indica BGIOSIBCE028829 N 0.791
B9HG69_POPTR Populus trichocarpa POPTR_0007s15150 N 0.791
cassava1917.valid.m1 Manihot esculenta cassava1917.valid.m1 N 0.791
GRMZM2G025488 Zea mays GRMZM2G025488 N 0.791
GSVIVG00032236001 Vitis vinifera GSVIVG00032236001 N 0.791
LOC_Os08g44200 Oryza sativa LOC_Os08g44200 N 0.791
GSVIVG00029460001 Vitis vinifera GSVIVG00029460001 N 0.791
B9HBC4_POPTR Populus trichocarpa POPTR_0006s07970 N 0.780
ppa002483m Prunus persica ppa002483m N 0.769
MDP0000287088 Malus x domestica MDP0000287088 N 0.769
MDP0000617859 Malus x domestica MDP0000617859 N 0.769
ppa002588m Prunus persica ppa002588m N 0.769
MDP0000405927 Malus x domestica MDP0000405927 N 0.769
cassava6538.valid.m1 Manihot esculenta cassava6538.valid.m1 N 0.769
29929.m004643 Ricinus communis 29929.m004643 N 0.769
GSVIVG00010494001 Vitis vinifera GSVIVG00010494001 N 0.769
BRADI3G42640 Brachypodium distachyon BRADI3G42640 N 0.769
B9GMK5_POPTR Populus trichocarpa POPTR_0001s13870 N 0.769
cassava12061.valid.m1 Manihot esculenta cassava12061.valid.m1 N 0.769
PK17832.1 Cannabis sativa PK17832.1 N 0.769
PK01736.1 Cannabis sativa PK01736.1 N 0.758
MDP0000248088 Malus x domestica MDP0000248088 N 0.758
PK05579.1 Cannabis sativa PK05579.1 N 0.758
MDP0000552419 Malus x domestica MDP0000552419 N 0.758
Medtr4g163280 Medicago truncatula Medtr4g163280 N 0.758
SB07G006330 Sorghum bicolor Sb07g006330 N 0.758
B9N817_POPTR Populus trichocarpa POPTR_0018s14670 N 0.758
Glyma07g00280.1 Glycine max Glyma07g00280.1 N 0.747
mgf019821m Mimulus guttatus mgf019821m N 0.747
Glyma08g24210.1 Glycine max Glyma08g24210.1 N 0.747
chr3.CM0292.380.nc Lotus japonicus chr3.CM0292.380.nc N 0.736
LOC_Os08g12760 Oryza sativa LOC_Os08g12760 N 0.736
GRMZM2G442195 Zea mays GRMZM2G442195 N 0.736
BRADI3G18190 Brachypodium distachyon BRADI3G18190 N 0.736
BGIOSIBCE026930 Oryza indica BGIOSIBCE026930 N 0.736
ppa002677m Prunus persica ppa002677m N 0.725
PDK_20s1441394g001 Phoenix dactylifera PDK_20s1441394g001 N 0.725
LOC_Os04g51940 Oryza sativa LOC_Os04g51940 N 0.725
Cucsa.356240 Cucumis sativus Cucsa.356240 N 0.725
MDP0000189157 Malus x domestica MDP0000189157 N 0.725
BRADI2G46590 Brachypodium distachyon BRADI2G46590 N 0.714
LOC_Os01g48790 Oryza sativa LOC_Os01g48790 N 0.714
SB06G027960 Sorghum bicolor Sb06g027960 N 0.714
BGIOSIBCE003171 Oryza indica BGIOSIBCE003171 N 0.714
GRMZM2G127780 Zea mays GRMZM2G127780 N 0.703
XM_002884922.1 Arabidopsis lyrata fgenesh2_kg.3__1434__AT3G13460.1 N 0.703
GRMZM2G126338 Zea mays GRMZM2G126338 N 0.703
XM_002864508.1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_8001450 N 0.703
gw1.181.55.1 Physcomitrella patens gw1.181.55.1 N 0.703
ECT3 Arabidopsis thaliana AT5G61020-TAIR-G N 0.703
BRADI1G05970 Brachypodium distachyon BRADI1G05970 N 0.703
SB01G008170 Sorghum bicolor Sb01g008170 N 0.703
ppa003664m Prunus persica ppa003664m N 0.703
cassava42993.valid.m1 Manihot esculenta cassava42993.valid.m1 N 0.703
GSVIVG00033395001 Vitis vinifera GSVIVG00033395001 N 0.703
GRMZM2G169116 Zea mays GRMZM2G169116 N 0.703
GRMZM2G144726 Zea mays GRMZM2G144726 N 0.703
ECT2 Arabidopsis thaliana AT3G13460-TAIR-G N 0.703
cassava42992.valid.m1 Manihot esculenta cassava42992.valid.m1 N 0.703
SB03G031190 Sorghum bicolor Sb03g031190 N 0.703
ECT10 Arabidopsis thaliana AT5G58190-TAIR-G N 0.703