XM_002864508.1 (Arabidopsis lyrata)
YTH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF04146 (YTH) IPR007275 fgenesh1_pm.C_scaffold_8001450 T62202_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
fgenesh1_pm.C_scaffold_8001450 YTH 397 487

Links

Other YTH family RBPs
Other Arabidopsis lyrata RBPs

88 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ECT10 Arabidopsis thaliana AT5G58190-TAIR-G N 1.000
B9N817_POPTR Populus trichocarpa POPTR_0018s14670 N 0.846
B9HBC4_POPTR Populus trichocarpa POPTR_0006s07970 N 0.846
Cucsa.356240 Cucumis sativus Cucsa.356240 N 0.846
PK05579.1 Cannabis sativa PK05579.1 N 0.846
mgf019821m Mimulus guttatus mgf019821m N 0.835
29890.m000285 Ricinus communis 29890.m000285 N 0.835
ppa002677m Prunus persica ppa002677m N 0.824
MDP0000189157 Malus x domestica MDP0000189157 N 0.802
GSVIVG00032236001 Vitis vinifera GSVIVG00032236001 N 0.802
cassava1916.valid.m1 Manihot esculenta cassava1916.valid.m1 N 0.791
cassava1918.valid.m1 Manihot esculenta cassava1918.valid.m1 N 0.791
ECT5 Arabidopsis thaliana AT3G13060-TAIR-G N 0.791
cassava1917.valid.m1 Manihot esculenta cassava1917.valid.m1 N 0.791
XM_002882758.1 Arabidopsis lyrata fgenesh2_kg.3__1376__AT3G13060.2 N 0.791
LOC_Os08g44200 Oryza sativa LOC_Os08g44200 N 0.769
SB07G024500 Sorghum bicolor Sb07g024500 N 0.769
Medtr4g163280 Medicago truncatula Medtr4g163280 N 0.769
GRMZM2G025488 Zea mays GRMZM2G025488 N 0.769
PK17832.1 Cannabis sativa PK17832.1 N 0.769
GSVIVG00029460001 Vitis vinifera GSVIVG00029460001 N 0.769
B9HG69_POPTR Populus trichocarpa POPTR_0007s15150 N 0.769
MDP0000287088 Malus x domestica MDP0000287088 N 0.769
ppa002483m Prunus persica ppa002483m N 0.769
B9N5D4_POPTR Populus trichocarpa POPTR_0014s00320 N 0.769
MDP0000405927 Malus x domestica MDP0000405927 N 0.769
ppa002588m Prunus persica ppa002588m N 0.769
BGIOSIBCE028829 Oryza indica BGIOSIBCE028829 N 0.769
MDP0000617859 Malus x domestica MDP0000617859 N 0.769
chr3.CM0292.380.nc Lotus japonicus chr3.CM0292.380.nc N 0.758
MDP0000248088 Malus x domestica MDP0000248088 N 0.758
MDP0000552419 Malus x domestica MDP0000552419 N 0.758
Glyma07g00280.1 Glycine max Glyma07g00280.1 N 0.758
Glyma08g24210.1 Glycine max Glyma08g24210.1 N 0.747
BRADI3G42640 Brachypodium distachyon BRADI3G42640 N 0.747
SB01G008170 Sorghum bicolor Sb01g008170 N 0.747
B9GMK5_POPTR Populus trichocarpa POPTR_0001s13870 N 0.747
GRMZM2G126338 Zea mays GRMZM2G126338 N 0.747
LOC_Os08g12760 Oryza sativa LOC_Os08g12760 N 0.736
cassava12061.valid.m1 Manihot esculenta cassava12061.valid.m1 N 0.736
29929.m004643 Ricinus communis 29929.m004643 N 0.736
MDP0000171737 Malus x domestica MDP0000171737 N 0.736
LOC_Os03g53670 Oryza sativa LOC_Os03g53670 N 0.736
cassava6538.valid.m1 Manihot esculenta cassava6538.valid.m1 N 0.736
BGIOSIBCE026930 Oryza indica BGIOSIBCE026930 N 0.736
SB07G006330 Sorghum bicolor Sb07g006330 N 0.736
Medtr8g134440 Medicago truncatula Medtr8g134440 N 0.725
MDP0000299155 Malus x domestica MDP0000299155 N 0.725
BRADI3G18190 Brachypodium distachyon BRADI3G18190 N 0.725
GRMZM2G442195 Zea mays GRMZM2G442195 N 0.725
BRADI4G02150 Brachypodium distachyon BRADI4G02150 N 0.725
LOC_Os01g48790 Oryza sativa LOC_Os01g48790 N 0.714
BRADI2G46590 Brachypodium distachyon BRADI2G46590 N 0.714
SB06G027960 Sorghum bicolor Sb06g027960 N 0.714
cassava42993.valid.m1 Manihot esculenta cassava42993.valid.m1 N 0.714
cassava42992.valid.m1 Manihot esculenta cassava42992.valid.m1 N 0.714
BGIOSIBCE003171 Oryza indica BGIOSIBCE003171 N 0.714
PK01736.1 Cannabis sativa PK01736.1 N 0.714
GSVIVG00010494001 Vitis vinifera GSVIVG00010494001 N 0.714
GSVIVG00017649001 Vitis vinifera GSVIVG00017649001 N 0.714
PDK_20s1441394g001 Phoenix dactylifera PDK_20s1441394g001 N 0.714
BRADI1G05970 Brachypodium distachyon BRADI1G05970 N 0.703
ppa018635m Prunus persica ppa018635m N 0.703
ppa003664m Prunus persica ppa003664m N 0.703
PK23104.1 Cannabis sativa PK23104.1 N 0.703
PDK_20s1631851g001 Phoenix dactylifera PDK_20s1631851g001 N 0.703
PK26094.1 Cannabis sativa PK26094.1 N 0.703
gw1.181.55.1 Physcomitrella patens gw1.181.55.1 N 0.703
SB03G031190 Sorghum bicolor Sb03g031190 N 0.703
cassava12386.valid.m1 Manihot esculenta cassava12386.valid.m1 N 0.703
cassava12387.valid.m1 Manihot esculenta cassava12387.valid.m1 N 0.703
cassava12388.valid.m1 Manihot esculenta cassava12388.valid.m1 N 0.703
B9HYD4_POPTR Populus trichocarpa POPTR_0010s18300 N 0.703
B9HII9_POPTR Populus trichocarpa POPTR_0008s09960 N 0.703
GSVIVG00036696001 Vitis vinifera GSVIVG00036696001 N 0.703
LOC_Os04g51940 Oryza sativa LOC_Os04g51940 N 0.703
B9HI18_POPTR Populus trichocarpa POPTR_0008s08030 N 0.703
cassava12389.valid.m1 Manihot esculenta cassava12389.valid.m1 N 0.703
Cucsa.135220 Cucumis sativus Cucsa.135220 N 0.703
chr6.LjT36O06.80.nd Lotus japonicus chr6.LjT36O06.80.nd N 0.703
MDP0000132385 Malus x domestica MDP0000132385 N 0.703
MDP0000306387 Malus x domestica MDP0000306387 N 0.703
Medtr2g085380 Medicago truncatula Medtr2g085380 N 0.703
GRMZM2G169116 Zea mays GRMZM2G169116 N 0.703
Glyma17g04270.1 Glycine max Glyma17g04270.1 N 0.703
XM_002893450.1 Arabidopsis lyrata fgenesh2_kg.1__2951__AT1G27960.1 N 0.703
GRMZM2G076062 Zea mays GRMZM2G076062 N 0.703
PDK_20s1308332g001 Phoenix dactylifera PDK_20s1308332g001 N 0.703