PK29685.1 (Cannabis sativa)
CCCH ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH) IPR000571 PK29685.1 T01781_0.6 Cannabis sativa genome (2012-Feb-20)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
PK29685.1 CCCH ZF 94 120
PK29685.1 CCCH ZF 141 166
PK29685.1 CCCH ZF 186 212
PK29685.1 CCCH ZF 354 380
PK29685.1 CCCH ZF 400 426

Links

Other CCCH ZF family RBPs
Other Cannabis sativa RBPs

36 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
29647.m002009 Ricinus communis 29647.m002009 N 0.701
29726.m004014 Ricinus communis 29726.m004014 N 0.881
30128.m009030 Ricinus communis 30128.m009030 N 0.000
AT2G47850 Arabidopsis thaliana AT2G47850-TAIR-G N 0.000
BRADI2G09350 Brachypodium distachyon BRADI2G09350 N 0.756
cassava17662.valid.m1 Manihot esculenta cassava17662.valid.m1 N 0.000
cassava19141.valid.m1 Manihot esculenta cassava19141.valid.m1 N 0.873
cassava29576.valid.m1 Manihot esculenta cassava29576.valid.m1 N 0.731
cassava43930.valid.m1 Manihot esculenta cassava43930.valid.m1 N 0.859
Glyma02g17260.1 Glycine max Glyma02g17260.1 N 0.746
Glyma07g37980.1 Glycine max Glyma07g37980.1 N 0.813
Glyma10g02540.1 Glycine max Glyma10g02540.1 N 0.000
Glyma10g02550.1 Glycine max Glyma10g02550.1 N 0.761
Glyma10g31370.1 Glycine max Glyma10g31370.1 N 0.709
Glyma17g02720.1 Glycine max Glyma17g02720.1 N 0.799
Glyma20g36140.1 Glycine max Glyma20g36140.1 N 0.000
GRMZM2G086994 Zea mays GRMZM2G086994 N 0.719
GSVIVG00010980001 Vitis vinifera GSVIVG00010980001 N 0.731
GSVIVG00017774001 Vitis vinifera GSVIVG00017774001 N 0.851
gw1.102.25.1 Physcomitrella patens gw1.102.25.1 N 0.739
gw1.151.82.1 Selaginella moellendorfii gw1.151.82.1 N 0.000
LOC_Os01g15460 Oryza sativa LOC_Os01g15460 N 0.716
MDP0000319251 Malus x domestica MDP0000319251 N 0.873
MDP0000535412 Malus x domestica MDP0000535412 N 0.858
MDP0000808281 Malus x domestica MDP0000808281 N 0.000
Medtr8g139290 Medicago truncatula Medtr8g139290 N 0.821
mgf001793m Mimulus guttatus mgf001793m N 0.701
mgf002685m Mimulus guttatus mgf002685m N 0.813
mgf004851m Mimulus guttatus mgf004851m N 0.701
mgf010716m Mimulus guttatus mgf010716m N 0.701
ppa005056m Prunus persica ppa005056m N 0.866
ppa005229m Prunus persica ppa005229m N 0.724
SB03G009930 Sorghum bicolor Sb03g009930 N 0.711
XM_002880280.1 Arabidopsis lyrata scaffold_403761.1 N 0.000