CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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GRMZM2G086994
(
Zea mays
)
CCCH ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00642 (zf-CCCH)
IPR000571
GRMZM2G086994
T05711_0.6
MaizeSequence (2009-Oct-16)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
GRMZM2G086994_P01
CCCH ZF
62
88
PGEADCGYYLRTGACGFGERCRYNHPR
GRMZM2G086994_P01
CCCH ZF
111
137
QGQPVCEYYLKTGTCKFGSNCKYHHPK
GRMZM2G086994_P01
CCCH ZF
156
182
PGEKECSYYMKTGQCKFGSTCKFHHPE
GRMZM2G086994_P01
CCCH ZF
308
334
PGQPECQYYMRTGDCKFGTTCKYNHPQ
GRMZM2G086994_P01
CCCH ZF
354
380
PGAQPCTYYAQNGYCRYGIACKYDHPM
GRMZM2G086994_P02
CCCH ZF
62
88
PGEADCGYYLRTGACGFGERCRYNHPR
GRMZM2G086994_P02
CCCH ZF
111
137
QGQPVCEYYLKTGTCKFGSNCKYHHPK
GRMZM2G086994_P02
CCCH ZF
156
182
PGEKECSYYMKTGQCKFGSTCKFHHPE
GRMZM2G086994_P02
CCCH ZF
308
334
PGQPECQYYMRTGDCKFGTTCKYNHPQ
GRMZM2G086994_P02
CCCH ZF
354
380
PGAQPCTYYAQNGYCRYGIACKYDHPM
GRMZM2G086994_P03
CCCH ZF
62
88
PGEADCGYYLRTGACGFGERCRYNHPR
GRMZM2G086994_P03
CCCH ZF
111
137
QGQPVCEYYLKTGTCKFGSNCKYHHPK
GRMZM2G086994_P03
CCCH ZF
156
182
PGEKECSYYMKTGQCKFGSTCKFHHPE
GRMZM2G086994_P04
CCCH ZF
62
88
PGEADCGYYLRTGACGFGERCRYNHPR
GRMZM2G086994_P04
CCCH ZF
111
137
QGQPVCEYYLKTGTCKFGSNCKYHHPK
GRMZM2G086994_P04
CCCH ZF
156
182
PGEKECSYYMKTGQCKFGSTCKFHHPE
GRMZM2G086994_P04
CCCH ZF
308
334
PGQPECQYYMRTGDCKFGTTCKYNHPQ
GRMZM2G086994_P04
CCCH ZF
354
380
PGAQPCTYYAQNGYCRYGIACKYDHPM
Links
Other
CCCH ZF
family RBPs
Other
Zea mays
RBPs
37 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
29647.m002009
Ricinus communis
29647.m002009
N
0.719
29726.m004014
Ricinus communis
29726.m004014
N
0.770
AT2G47850
Arabidopsis thaliana
AT2G47850-TAIR-G
N
0.719
AT5G18550
Arabidopsis thaliana
AT5G18550-TAIR-G
N
0.711
BRADI2G09340
Brachypodium distachyon
BRADI2G09340
N
0.763
BRADI2G09350
Brachypodium distachyon
BRADI2G09350
N
0.926
cassava19141.valid.m1
Manihot esculenta
cassava19141.valid.m1
N
0.741
cassava29576.valid.m1
Manihot esculenta
cassava29576.valid.m1
N
0.719
cassava43930.valid.m1
Manihot esculenta
cassava43930.valid.m1
N
0.748
Glyma02g17260.1
Glycine max
Glyma02g17260.1
N
0.719
Glyma07g37980.1
Glycine max
Glyma07g37980.1
N
0.726
Glyma10g02550.1
Glycine max
Glyma10g02550.1
N
0.726
Glyma17g02720.1
Glycine max
Glyma17g02720.1
N
0.711
GRMZM2G036837
Zea mays
GRMZM2G036837
N
0.963
GRMZM2G069009
Zea mays
GRMZM2G069009
N
0.785
GRMZM2G475017
Zea mays
GRMZM2G475017
N
0.852
GSVIVG00010980001
Vitis vinifera
GSVIVG00010980001
N
0.733
GSVIVG00017774001
Vitis vinifera
GSVIVG00017774001
N
0.763
gw1.102.25.1
Physcomitrella patens
gw1.102.25.1
N
0.704
LjSGA_008412.1
Lotus japonicus
LjSGA_008412.1
N
0.765
LOC_Os01g15350
Oryza sativa
LOC_Os01g15350
N
0.785
LOC_Os01g15460
Oryza sativa
LOC_Os01g15460
N
0.889
MDP0000207283
Malus x domestica
MDP0000207283
N
0.711
MDP0000319251
Malus x domestica
MDP0000319251
N
0.770
MDP0000535412
Malus x domestica
MDP0000535412
N
0.748
Medtr8g139290
Medicago truncatula
Medtr8g139290
N
0.741
mgf002685m
Mimulus guttatus
mgf002685m
N
0.748
mgf008934m
Mimulus guttatus
mgf008934m
N
0.756
mgf026218m
Mimulus guttatus
mgf026218m
N
0.704
PK29685.1
Cannabis sativa
PK29685.1
N
0.719
POPTR_0013s08490
Populus trichocarpa
POPTR_0013s08490
N
0.728
ppa005056m
Prunus persica
ppa005056m
N
0.770
ppa005229m
Prunus persica
ppa005229m
N
0.719
SB03G009920
Sorghum bicolor
Sb03g009920
N
0.785
SB03G009930
Sorghum bicolor
Sb03g009930
N
0.963
XM_002880280.1
Arabidopsis lyrata
scaffold_403761.1
N
0.719