GRMZM2G086994 (Zea mays)
CCCH ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH) IPR000571 GRMZM2G086994 T05711_0.6 MaizeSequence (2009-Oct-16)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
GRMZM2G086994_P01 CCCH ZF 62 88
GRMZM2G086994_P01 CCCH ZF 111 137
GRMZM2G086994_P01 CCCH ZF 156 182
GRMZM2G086994_P01 CCCH ZF 308 334
GRMZM2G086994_P01 CCCH ZF 354 380
GRMZM2G086994_P02 CCCH ZF 62 88
GRMZM2G086994_P02 CCCH ZF 111 137
GRMZM2G086994_P02 CCCH ZF 156 182
GRMZM2G086994_P02 CCCH ZF 308 334
GRMZM2G086994_P02 CCCH ZF 354 380
GRMZM2G086994_P03 CCCH ZF 62 88
GRMZM2G086994_P03 CCCH ZF 111 137
GRMZM2G086994_P03 CCCH ZF 156 182
GRMZM2G086994_P04 CCCH ZF 62 88
GRMZM2G086994_P04 CCCH ZF 111 137
GRMZM2G086994_P04 CCCH ZF 156 182
GRMZM2G086994_P04 CCCH ZF 308 334
GRMZM2G086994_P04 CCCH ZF 354 380

Links

Other CCCH ZF family RBPs
Other Zea mays RBPs

37 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
29647.m002009 Ricinus communis 29647.m002009 N 0.719
29726.m004014 Ricinus communis 29726.m004014 N 0.770
AT2G47850 Arabidopsis thaliana AT2G47850-TAIR-G N 0.719
AT5G18550 Arabidopsis thaliana AT5G18550-TAIR-G N 0.711
BRADI2G09340 Brachypodium distachyon BRADI2G09340 N 0.763
BRADI2G09350 Brachypodium distachyon BRADI2G09350 N 0.926
cassava19141.valid.m1 Manihot esculenta cassava19141.valid.m1 N 0.741
cassava29576.valid.m1 Manihot esculenta cassava29576.valid.m1 N 0.719
cassava43930.valid.m1 Manihot esculenta cassava43930.valid.m1 N 0.748
Glyma02g17260.1 Glycine max Glyma02g17260.1 N 0.719
Glyma07g37980.1 Glycine max Glyma07g37980.1 N 0.726
Glyma10g02550.1 Glycine max Glyma10g02550.1 N 0.726
Glyma17g02720.1 Glycine max Glyma17g02720.1 N 0.711
GRMZM2G036837 Zea mays GRMZM2G036837 N 0.963
GRMZM2G069009 Zea mays GRMZM2G069009 N 0.785
GRMZM2G475017 Zea mays GRMZM2G475017 N 0.852
GSVIVG00010980001 Vitis vinifera GSVIVG00010980001 N 0.733
GSVIVG00017774001 Vitis vinifera GSVIVG00017774001 N 0.763
gw1.102.25.1 Physcomitrella patens gw1.102.25.1 N 0.704
LjSGA_008412.1 Lotus japonicus LjSGA_008412.1 N 0.765
LOC_Os01g15350 Oryza sativa LOC_Os01g15350 N 0.785
LOC_Os01g15460 Oryza sativa LOC_Os01g15460 N 0.889
MDP0000207283 Malus x domestica MDP0000207283 N 0.711
MDP0000319251 Malus x domestica MDP0000319251 N 0.770
MDP0000535412 Malus x domestica MDP0000535412 N 0.748
Medtr8g139290 Medicago truncatula Medtr8g139290 N 0.741
mgf002685m Mimulus guttatus mgf002685m N 0.748
mgf008934m Mimulus guttatus mgf008934m N 0.756
mgf026218m Mimulus guttatus mgf026218m N 0.704
PK29685.1 Cannabis sativa PK29685.1 N 0.719
POPTR_0013s08490 Populus trichocarpa POPTR_0013s08490 N 0.728
ppa005056m Prunus persica ppa005056m N 0.770
ppa005229m Prunus persica ppa005229m N 0.719
SB03G009920 Sorghum bicolor Sb03g009920 N 0.785
SB03G009930 Sorghum bicolor Sb03g009930 N 0.963
XM_002880280.1 Arabidopsis lyrata scaffold_403761.1 N 0.719