LOC100392590 (Callithrix jacchus)
KH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00013 (KH_1) IPR018111 ENSCJAG00000018590 T18553_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
PCBP2
M043_0.6 		Homo sapiens CCYYCCH RNAcompete
Ray et al.(2013)
RNCMPT00044 		0.989
pcbp2
M211_0.6 		Danio rerio WWUCCC RNAcompete
Ray et al.(2013)
RNCMPT00246 		0.947
Pcbp1
M207_0.6 		Mus musculus CYUUCC RNAcompete
Ray et al.(2013)
RNCMPT00239 		0.926
PCBP1
M177_0.6 		Homo sapiens CCWWHCC RNAcompete
Ray et al.(2013)
RNCMPT00186 		0.926
Pcbp3
M188_0.6 		Mus musculus UUUYCC RNAcompete
Ray et al.(2013)
RNCMPT00215 		0.872
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSCJAP00000034551 KH 1 37
ENSCJAP00000034551 KH 61 122
ENSCJAP00000034551 KH 204 266
ENSCJAP00000034592 KH 15 75
ENSCJAP00000034592 KH 99 160
ENSCJAP00000034592 KH 240 302
ENSCJAP00000034599 KH 15 75
ENSCJAP00000034599 KH 99 160
ENSCJAP00000034599 KH 257 319

Links

Other KH family RBPs
Other Callithrix jacchus RBPs

129 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
AAH41241 Xenopus laevis AAH41241 I 0.973
AAH84195 Xenopus laevis AAH84195 I 0.973
Ame_R002707 Ailuropoda melanoleuca Ame_R002707 I 0.926
Ame_R007160 Ailuropoda melanoleuca Ame_R007160 I 0.820
Ame_R011627 Ailuropoda melanoleuca Ame_R011627 I 0.930
CAB50743 Xenopus laevis CAB50743 I 0.973
CAD29864 Xenopus laevis CAD29864 I 0.973
ENSACAG00000000783 Anolis carolinensis ENSACAG00000000783 I 0.989
PCBP3 Anolis carolinensis ENSACAG00000004607 I 0.872
ENSACAG00000009819 Anolis carolinensis ENSACAG00000009819 I 0.872
PCBP4 Anolis carolinensis ENSACAG00000011701 I 0.711
PCBP1_BOVIN Bos taurus ENSBTAG00000008985 I 0.926
PCBP4_BOVIN Bos taurus ENSBTAG00000018622 I 0.705
Q3SYT9_BOVIN Bos taurus ENSBTAG00000020757 I 0.989
Q17QV0_BOVIN Bos taurus ENSBTAG00000030775 I 0.862
PCBP2 Canis familiaris ENSCAFG00000006821 I 0.989
PCBP4 Canis familiaris ENSCAFG00000010019 I 0.705
PCBP1 Canis familiaris ENSCAFG00000013845 I 0.899
LOC100408015 Callithrix jacchus ENSCJAG00000001903 I 0.872
PCBP1 Callithrix jacchus ENSCJAG00000004017 I 0.888
A6MK33_CALJA Callithrix jacchus ENSCJAG00000005783 I 0.705
LOC100409398 Callithrix jacchus ENSCJAG00000007694 I 0.920
A6MKZ3_CALJA Callithrix jacchus ENSCJAG00000022539 I 0.910
ENSCJAG00000034075 Callithrix jacchus ENSCJAG00000034075 I 0.984
ENSCPOG00000000967 Cavia porcellus ENSCPOG00000000967 I 0.989
PCBP3 Cavia porcellus ENSCPOG00000003648 I 0.872
PCBP1 Cavia porcellus ENSCPOG00000013511 I 0.926
PCBP4 Cavia porcellus ENSCPOG00000014617 I 0.700
pcbp2 Danio rerio ENSDARG00000013184 D 0.947
pcbp3 Danio rerio ENSDARG00000054378 I 0.814
PCBP2 Dasypus novemcinctus ENSDNOG00000008688 I 0.989
Pcbp2 Dipodomys ordii ENSDORG00000001384 I 0.799
LOC100050579 Equus caballus ENSECAG00000002544 I 0.926
LOC100050101 Equus caballus ENSECAG00000012413 I 0.872
PCBP2 Equus caballus ENSECAG00000022389 I 0.989
LOC100060660 Equus caballus ENSECAG00000024218 I 0.705
PCBP2 Echinops telfairi ENSETEG00000014741 I 0.877
PCBP3 Felis catus ENSFCAG00000014812 I 0.773
PCBP4 Homo sapiens ENSG00000090097 I 0.705
PCBP1 Homo sapiens ENSG00000169564 D 0.926
PCBP3 Homo sapiens ENSG00000183570 I 0.872
PCBP2 Homo sapiens ENSG00000197111 D 0.989
PCBP3 Gasterosteus aculeatus ENSGACG00000002266 I 0.862
PCBP4 Gasterosteus aculeatus ENSGACG00000002664 I 0.741
ENSGACG00000003044 Gasterosteus aculeatus ENSGACG00000003044 I 0.747
ENSGACG00000003197 Gasterosteus aculeatus ENSGACG00000003197 I 0.926
ENSGACG00000006681 Gasterosteus aculeatus ENSGACG00000006681 I 0.936
PCBP3 Gasterosteus aculeatus ENSGACG00000014955 I 0.862
PCBP3 Gallus gallus ENSGALG00000004394 I 0.835
PCBP3 Gallus gallus ENSGALG00000013155 I 0.878
PCBP3 Gorilla gorilla ENSGGOG00000003683 I 0.872
PCBP4 Gorilla gorilla ENSGGOG00000012474 I 0.705
PCBP2 Gorilla gorilla ENSGGOG00000012613 I 0.989
PCBP1 Gorilla gorilla ENSGGOG00000028130 I 0.926
ENSLAFG00000013187 Loxodonta africana ENSLAFG00000013187 I 0.989
PCBP3 Loxodonta africana ENSLAFG00000020835 I 0.821
ENSLAFG00000025534 Loxodonta africana ENSLAFG00000025534 I 0.791
PCBP2 Macropus eugenii ENSMEUG00000001887 I 0.899
PCBP3 Macropus eugenii ENSMEUG00000012960 I 0.830
PCBP3 Meleagris gallopavo ENSMGAG00000001883 I 0.872
ENSMGAG00000006794 Meleagris gallopavo ENSMGAG00000006794 I 0.830
PCBP1 Microcebus murinus ENSMICG00000002140 I 0.704
PCBP2 Microcebus murinus ENSMICG00000011651 I 0.989
PCBP3 Microcebus murinus ENSMICG00000012679 I 0.814
PCBP3 Myotis lucifugus ENSMLUG00000003074 I 0.773
PCBP2 Myotis lucifugus ENSMLUG00000009971 I 0.846
PCBP1 Myotis lucifugus ENSMLUG00000014173 I 0.926
PCBP3 Macaca mulatta ENSMMUG00000003825 I 0.872
PCBP2 Macaca mulatta ENSMMUG00000006608 I 0.989
PCBP4 Macaca mulatta ENSMMUG00000022205 I 0.705
ENSMODG00000000280 Monodelphis domestica ENSMODG00000000280 I 0.989
ENSMODG00000017748 Monodelphis domestica ENSMODG00000017748 I 0.910
ENSMODG00000020653 Monodelphis domestica ENSMODG00000020653 I 0.757
Pcbp3 Mus musculus ENSMUSG00000001120 D 0.872
Pcbp4 Mus musculus ENSMUSG00000023495 I 0.705
Pcbp1 Mus musculus ENSMUSG00000051695 D 0.926
Pcbp2 Mus musculus ENSMUSG00000056851 I 0.989
PCBP4 Ornithorhynchus anatinus ENSOANG00000014110 I 0.716
PCBP3 Oryctolagus cuniculus ENSOCUG00000002696 I 0.872
PCBP1_RABIT Oryctolagus cuniculus ENSOCUG00000003634 I 0.926
ENSOCUG00000021452 Oryctolagus cuniculus ENSOCUG00000021452 I 0.738
ENSOCUG00000022490 Oryctolagus cuniculus ENSOCUG00000022490 I 0.989
PCBP4 Oryctolagus cuniculus ENSOCUG00000025336 I 0.705
PCBP3 Otolemur garnettii ENSOGAG00000008044 I 0.820
PCBP1 Otolemur garnettii ENSOGAG00000008557 I 0.751
PCBP3 Ochotona princeps ENSOPRG00000003431 I 0.822
PCBP2 Ochotona princeps ENSOPRG00000004680 I 0.989
PCBP3 Oryzias latipes ENSORLG00000000059 I 0.831
ENSORLG00000005176 Oryzias latipes ENSORLG00000005176 I 0.947
ENSORLG00000012872 Oryzias latipes ENSORLG00000012872 I 0.941
ENSORLG00000014385 Oryzias latipes ENSORLG00000014385 I 0.787
PCBP2 Procavia capensis ENSPCAG00000005154 I 0.989
ENSPPYG00000004581 Pongo pygmaeus ENSPPYG00000004581 I 0.989
ENSPPYG00000012328 Pongo pygmaeus ENSPPYG00000012328 I 0.926
ENSPPYG00000013822 Pongo pygmaeus ENSPPYG00000013822 I 0.705
PCBP2 Pan troglodytes ENSPTRG00000005018 I 0.989
PCBP1 Pan troglodytes ENSPTRG00000012025 I 0.926
PCBP3 Pan troglodytes ENSPTRG00000014010 I 0.872
PCBP4 Pan troglodytes ENSPTRG00000014983 I 0.705
PCBP3 Pteropus vampyrus ENSPVAG00000000832 I 0.723
PCBP2 Pteropus vampyrus ENSPVAG00000012284 I 0.989
Pcbp3 Rattus norvegicus ENSRNOG00000001245 I 0.872
D4A8D6_RAT Rattus norvegicus ENSRNOG00000006713 I 0.786
ENSRNOG00000012044 Rattus norvegicus ENSRNOG00000012044 I 0.715
Pcbp4 Rattus norvegicus ENSRNOG00000012406 I 0.705
Pcbp1 Rattus norvegicus ENSRNOG00000017708 I 0.926
ENSRNOG00000019487 Rattus norvegicus ENSRNOG00000019487 I 0.862
D4ADH2_RAT Rattus norvegicus ENSRNOG00000039295 I 0.868
PCBP2 Sus scrofa ENSSSCG00000000274 I 0.989
PCBP2 Tupaia belangeri ENSTBEG00000015592 I 0.803
PCBP3-2 Taeniopygia guttata ENSTGUG00000008158 I 0.878
PCBP1 Taeniopygia guttata ENSTGUG00000016232 I 0.803
PCBP3 Tetraodon nigroviridis ENSTNIG00000008872 I 0.718
PCBP3 Tetraodon nigroviridis ENSTNIG00000010615 I 0.862
PCBP1 Tetraodon nigroviridis ENSTNIG00000012585 I 0.941
PCBP4 Tetraodon nigroviridis ENSTNIG00000017887 I 0.741
PCBP3 Takifugu rubripes ENSTRUG00000006280 I 0.862
PCBP4 Takifugu rubripes ENSTRUG00000007426 I 0.746
ENSTRUG00000009361 Takifugu rubripes ENSTRUG00000009361 I 0.947
ENSTRUG00000011419 Takifugu rubripes ENSTRUG00000011419 I 0.926
PCBP3 Takifugu rubripes ENSTRUG00000013604 I 0.862
ENSTRUG00000017789 Takifugu rubripes ENSTRUG00000017789 I 0.737
PCBP2 Tarsius syrichta ENSTSYG00000009771 I 0.941
PCBP3 Tursiops truncatus ENSTTRG00000015075 I 0.872
PCBP2 Tursiops truncatus ENSTTRG00000017174 I 0.989
pcbp3 Xenopus tropicalis ENSXETG00000012658 I 0.973
estExt_gwp.C_3950051 Branchiostoma floridae estExt_gwp.C_3950051 I 0.725
fgenesh2_pg.scaffold_166000022 Branchiostoma floridae fgenesh2_pg.scaffold_166000022 I 0.725