LOC100401647 (Callithrix jacchus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSCJAG00000007908 T35543_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
HNRNPA2B1
M024_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00024 		1.000
HNRNPA1
M312_0.6 		Homo sapiens Sequence logo not available UAGGGW RIP-chip
Cook et al.(2011)
560_17925491 		0.814
HNRNPA1
M271_0.6 		Homo sapiens UAGGGW SELEX
Cook et al.(2011)
23_7510636 		0.814
HNRNPA1
M022_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00022 		0.814
HNRNPA1L2
M023_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00023 		0.793
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSCJAP00000014695 RRM 23 92
ENSCJAP00000014695 RRM 114 183
ENSCJAP00000014698 RRM 11 80
ENSCJAP00000014698 RRM 102 171
ENSCJAP00000045636 RRM 11 80
ENSCJAP00000045636 RRM 102 171
ENSCJAP00000046802 RRM 23 92
ENSCJAP00000046802 RRM 114 183

Links

Other RRM family RBPs
Other Callithrix jacchus RBPs

225 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Ame_R011792 Ailuropoda melanoleuca Ame_R011792 I 0.752
ENSACAG00000007169 Anolis carolinensis ENSACAG00000007169 I 0.766
ROA1_BOVIN Bos taurus ENSBTAG00000001553 I 0.752
LOC785445 Bos taurus ENSBTAG00000025621 I 0.731
XM_844664.1 Canis familiaris ENSCAFG00000000687 I 0.732
ENSCAFG00000001973 Canis familiaris ENSCAFG00000001973 I 0.701
XM_543834.2 Canis familiaris ENSCAFG00000002157 I 0.000
ENSCAFG00000003418 Canis familiaris ENSCAFG00000003418 I 0.000
ENSCAFG00000003493 Canis familiaris ENSCAFG00000003493 I 0.708
ENSCAFG00000004202 Canis familiaris ENSCAFG00000004202 I 0.722
XM_854536.1 Canis familiaris ENSCAFG00000005046 I 0.731
ENSCAFG00000006036 Canis familiaris ENSCAFG00000006036 I 0.721
XM_855847.1 Canis familiaris ENSCAFG00000006327 I 0.717
XM_534786.2 Canis familiaris ENSCAFG00000006580 I 0.752
XP_541811.1 Canis familiaris ENSCAFG00000006586 I 0.000
ENSCAFG00000006663 Canis familiaris ENSCAFG00000006663 I 0.000
ENSCAFG00000006784 Canis familiaris ENSCAFG00000006784 I 0.724
ENSCAFG00000007879 Canis familiaris ENSCAFG00000007879 I 0.710
ENSCAFG00000008379 Canis familiaris ENSCAFG00000008379 I 0.714
ENSCAFG00000010153 Canis familiaris ENSCAFG00000010153 I 0.738
ENSCAFG00000011035 Canis familiaris ENSCAFG00000011035 I 0.729
ENSCAFG00000014691 Canis familiaris ENSCAFG00000014691 I 0.729
ENSCAFG00000015319 Canis familiaris ENSCAFG00000015319 I 0.743
ENSCAFG00000017316 Canis familiaris ENSCAFG00000017316 I 0.754
ENSCAFG00000017494 Canis familiaris ENSCAFG00000017494 I 0.700
ENSCAFG00000018186 Canis familiaris ENSCAFG00000018186 I 0.708
ENSCAFG00000019104 Canis familiaris ENSCAFG00000019104 I 0.708
ENSCAFG00000019118 Canis familiaris ENSCAFG00000019118 I 0.715
ENSCAFG00000020238 Canis familiaris ENSCAFG00000020238 I 0.708
ENSCAFG00000023056 Canis familiaris ENSCAFG00000023056 I 0.000
XM_852631.1 Canis familiaris ENSCAFG00000023680 I 0.738
ENSCAFG00000024951 Canis familiaris ENSCAFG00000024951 I 0.717
ENSCJAG00000000095 Callithrix jacchus ENSCJAG00000000095 I 0.703
ENSCJAG00000001353 Callithrix jacchus ENSCJAG00000001353 I 0.736
LOC100409067 Callithrix jacchus ENSCJAG00000003245 I 0.738
LOC100397230 Callithrix jacchus ENSCJAG00000004031 I 0.745
ENSCJAG00000004902 Callithrix jacchus ENSCJAG00000004902 I 0.703
ENSCJAG00000005407 Callithrix jacchus ENSCJAG00000005407 I 0.000
LOC100413454 Callithrix jacchus ENSCJAG00000009030 I 0.738
ENSCJAG00000009723 Callithrix jacchus ENSCJAG00000009723 I 0.717
ENSCJAG00000010169 Callithrix jacchus ENSCJAG00000010169 I 0.000
LOC100397230 Callithrix jacchus ENSCJAG00000014791 I 0.703
LOC100397230 Callithrix jacchus ENSCJAG00000018864 I 0.752
ENSCJAG00000019479 Callithrix jacchus ENSCJAG00000019479 I 0.752
LOC100410389 Callithrix jacchus ENSCJAG00000023392 I 0.724
ENSCJAG00000031552 Callithrix jacchus ENSCJAG00000031552 I 0.731
ENSCJAG00000033856 Callithrix jacchus ENSCJAG00000033856 I 0.752
ENSCPOG00000021077 Cavia porcellus ENSCPOG00000021077 I 0.731
ENSDNOG00000009228 Dasypus novemcinctus ENSDNOG00000009228 I 0.752
LOC100054206 Equus caballus ENSECAG00000006699 I 0.729
Q6DTK6_HORSE Equus caballus ENSECAG00000008676 I 0.752
ENSEEUG00000000494 Erinaceus europaeus ENSEEUG00000000494 I 0.717
ENSEEUG00000006130 Erinaceus europaeus ENSEEUG00000006130 I 0.745
ENSETEG00000001872 Echinops telfairi ENSETEG00000001872 I 0.000
ENSFCAG00000010150 Felis catus ENSFCAG00000010150 I 0.752
HNRNPA1 Homo sapiens ENSG00000135486 D 0.752
HNRNPA1L2 Homo sapiens ENSG00000139675 D 0.731
ENSG00000215492 Homo sapiens ENSG00000215492 I 0.752
HNRNPA1 Gorilla gorilla ENSGGOG00000003040 I 0.752
ENSGGOG00000025381 Gorilla gorilla ENSGGOG00000025381 I 0.745
ENSLAFG00000026657 Loxodonta africana ENSLAFG00000026657 I 0.745
ENSLAFG00000029587 Loxodonta africana ENSLAFG00000029587 I 0.759
ENSLAFG00000030769 Loxodonta africana ENSLAFG00000030769 I 0.724
ENSMGAG00000007630 Meleagris gallopavo ENSMGAG00000007630 I 0.747
ENSMICG00000009289 Microcebus murinus ENSMICG00000009289 I 0.000
ENSMLUG00000000648 Myotis lucifugus ENSMLUG00000000648 I 0.752
ENSMLUG00000000788 Myotis lucifugus ENSMLUG00000000788 I 0.722
ENSMLUG00000003232 Myotis lucifugus ENSMLUG00000003232 I 0.738
LOC710473 Macaca mulatta ENSMMUG00000007887 I 0.752
LOC710473 Macaca mulatta ENSMMUG00000007928 I 0.731
ENSMMUG00000008337 Macaca mulatta ENSMMUG00000008337 I 0.714
XR_011984.1 Macaca mulatta ENSMMUG00000011640 I 0.700
LOC710473 Macaca mulatta ENSMMUG00000012989 I 0.752
ENSMMUG00000013424 Macaca mulatta ENSMMUG00000013424 I 0.711
ENSMMUG00000022448 Macaca mulatta ENSMMUG00000022448 I 0.716
LOC710473 Macaca mulatta ENSMMUG00000029402 I 0.752
ROA1_MACMU Macaca mulatta ENSMMUG00000031613 I 0.731
XM_001106745.1 Macaca mulatta ENSMMUG00000031809 I 0.000
ENSMODG00000006291 Monodelphis domestica ENSMODG00000006291 I 0.000
ENSMODG00000023422 Monodelphis domestica ENSMODG00000023422 I 0.701
ENSMUSG00000021927 Mus musculus ENSMUSG00000021927 I 0.724
Hnrnpa1 Mus musculus ENSMUSG00000046434 I 0.752
ENSOCUG00000010985 Oryctolagus cuniculus ENSOCUG00000010985 I 0.745
ENSOCUG00000013350 Oryctolagus cuniculus ENSOCUG00000013350 I 0.752
ENSOCUG00000021006 Oryctolagus cuniculus ENSOCUG00000021006 I 0.724
ENSOCUG00000021007 Oryctolagus cuniculus ENSOCUG00000021007 I 0.745
ENSOCUG00000022568 Oryctolagus cuniculus ENSOCUG00000022568 I 0.745
ENSOCUG00000022627 Oryctolagus cuniculus ENSOCUG00000022627 I 0.000
ENSOCUG00000022668 Oryctolagus cuniculus ENSOCUG00000022668 I 0.724
ENSOCUG00000023322 Oryctolagus cuniculus ENSOCUG00000023322 I 0.738
ENSOCUG00000023444 Oryctolagus cuniculus ENSOCUG00000023444 I 0.745
ENSOCUG00000023674 Oryctolagus cuniculus ENSOCUG00000023674 I 0.752
ENSOCUG00000028124 Oryctolagus cuniculus ENSOCUG00000028124 I 0.738
ENSOGAG00000009945 Otolemur garnettii ENSOGAG00000009945 I 0.731
ENSOGAG00000017179 Otolemur garnettii ENSOGAG00000017179 I 0.721
ENSOPRG00000006107 Ochotona princeps ENSOPRG00000006107 I 0.745
ENSPPYG00000003855 Pongo pygmaeus ENSPPYG00000003855 I 0.000
ENSPPYG00000017853 Pongo pygmaeus ENSPPYG00000017853 I 0.724
ROA1_PANTR Pan troglodytes ENSPTRG00000005035 I 0.752
ROA1_PANTR Pan troglodytes ENSPTRG00000028756 I 0.752
ROA1_PANTR Pan troglodytes ENSPTRG00000031363 I 0.752
HNRNPA1L2 Pan troglodytes ENSPTRG00000032520 I 0.752
ENSPVAG00000000322 Pteropus vampyrus ENSPVAG00000000322 I 0.752
ENSRNOG00000005951 Rattus norvegicus ENSRNOG00000005951 I 0.710
ENSRNOG00000011100 Rattus norvegicus ENSRNOG00000011100 I 0.000
D4AD23_RAT Rattus norvegicus ENSRNOG00000025891 I 0.701
D4A491_RAT Rattus norvegicus ENSRNOG00000029531 I 0.724
ENSRNOG00000033182 Rattus norvegicus ENSRNOG00000033182 I 0.724
Hnrnpa1 Rattus norvegicus ENSRNOG00000036839 I 0.752
ENSRNOG00000039436 Rattus norvegicus ENSRNOG00000039436 I 0.724
ENSSSCG00000000288 Sus scrofa ENSSSCG00000000288 I 0.752
ENSTBEG00000008238 Tupaia belangeri ENSTBEG00000008238 I 0.752
ENSTBEG00000012511 Tupaia belangeri ENSTBEG00000012511 I 0.000
ENSTBEG00000016272 Tupaia belangeri ENSTBEG00000016272 I 0.710
ENSTTRG00000004505 Tursiops truncatus ENSTTRG00000004505 I 0.752