ENSCJAG00000031552 (Callithrix jacchus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSCJAG00000031552 T35709_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
HNRNPA1
M312_0.6 		Homo sapiens Sequence logo not available UAGGGW RIP-chip
Cook et al.(2011)
560_17925491 		0.971
HNRNPA1
M271_0.6 		Homo sapiens UAGGGW SELEX
Cook et al.(2011)
23_7510636 		0.971
HNRNPA1
M022_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00022 		0.971
HNRNPA1L2
M023_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00023 		0.950
HNRNPA2B1
M024_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00024 		0.793
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSCJAP00000015019 RRM 16 85
ENSCJAP00000015019 RRM 107 176

Links

Other RRM family RBPs
Other Callithrix jacchus RBPs

319 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
AAA49741 Xenopus laevis AAA49741 I 0.879
AAA49742 Xenopus laevis AAA49742 I 0.879
AAA49948 Xenopus laevis AAA49948 I 0.724
AAA49949 Xenopus laevis AAA49949 I 0.850
AAA49950 Xenopus laevis AAA49950 I 0.831
AAB59951 Xenopus laevis AAB59951 I 0.710
AAH43750 Xenopus laevis AAH43750 I 0.710
AAH45260 Xenopus laevis AAH45260 I 0.893
AAH46692 Xenopus laevis AAH46692 I 0.724
AAH72090 Xenopus laevis AAH72090 I 0.893
AAI06633 Xenopus laevis AAI06633 I 0.710
AAI69881 Xenopus laevis AAI69881 I 0.831
Ame_R000626 Ailuropoda melanoleuca Ame_R000626 I 0.731
Ame_R011792 Ailuropoda melanoleuca Ame_R011792 I 0.971
CBF67555 Xenopus laevis CBF67555 I 0.879
CBF67577 Xenopus laevis CBF67577 I 0.724
CBF67578 Xenopus laevis CBF67578 I 0.831
CBF67672 Xenopus laevis CBF67672 I 0.893
CBU92428 Xenopus laevis CBU92428 I 0.879
CBU92450 Xenopus laevis CBU92450 I 0.724
CBU92451 Xenopus laevis CBU92451 I 0.831
CBU92546 Xenopus laevis CBU92546 I 0.893
ENSACAG00000007169 Anolis carolinensis ENSACAG00000007169 I 0.957
HNRNPA3 Anolis carolinensis ENSACAG00000012234 I 0.850
HNRNPA2B1 Anolis carolinensis ENSACAG00000012992 I 0.724
ROA1_BOVIN Bos taurus ENSBTAG00000001553 I 0.971
LOC516616 Bos taurus ENSBTAG00000002284 I 0.000
ROA2_BOVIN Bos taurus ENSBTAG00000005726 I 0.731
ENSBTAG00000011195 Bos taurus ENSBTAG00000011195 I 0.000
ENSBTAG00000020849 Bos taurus ENSBTAG00000020849 I 0.000
LOC781499 Bos taurus ENSBTAG00000021580 I 0.844
LOC785445 Bos taurus ENSBTAG00000025621 I 0.922
LOC538435 Bos taurus ENSBTAG00000038680 I 0.000
XM_844664.1 Canis familiaris ENSCAFG00000000687 I 0.796
ENSCAFG00000001973 Canis familiaris ENSCAFG00000001973 I 0.845
HNRNPA2B1 Canis familiaris ENSCAFG00000002885 I 0.731
ENSCAFG00000003493 Canis familiaris ENSCAFG00000003493 I 0.845
ENSCAFG00000003921 Canis familiaris ENSCAFG00000003921 I 0.731
ENSCAFG00000004202 Canis familiaris ENSCAFG00000004202 I 0.859
XM_854536.1 Canis familiaris ENSCAFG00000005046 I 0.936
ENSCAFG00000005308 Canis familiaris ENSCAFG00000005308 I 0.839
ENSCAFG00000006036 Canis familiaris ENSCAFG00000006036 I 0.785
XM_855847.1 Canis familiaris ENSCAFG00000006327 I 0.900
XM_534786.2 Canis familiaris ENSCAFG00000006580 I 0.971
ENSCAFG00000006784 Canis familiaris ENSCAFG00000006784 I 0.936
ENSCAFG00000007879 Canis familiaris ENSCAFG00000007879 I 0.867
ENSCAFG00000008301 Canis familiaris ENSCAFG00000008301 I 0.804
ENSCAFG00000008379 Canis familiaris ENSCAFG00000008379 I 0.779
ENSCAFG00000009412 Canis familiaris ENSCAFG00000009412 I 0.792
ENSCAFG00000010153 Canis familiaris ENSCAFG00000010153 I 0.957
ENSCAFG00000011035 Canis familiaris ENSCAFG00000011035 I 0.901
ENSCAFG00000013303 Canis familiaris ENSCAFG00000013303 I 0.766
ENSCAFG00000013497 Canis familiaris ENSCAFG00000013497 I 0.844
ENSCAFG00000014691 Canis familiaris ENSCAFG00000014691 I 0.821
ENSCAFG00000015319 Canis familiaris ENSCAFG00000015319 I 0.880
ENSCAFG00000017316 Canis familiaris ENSCAFG00000017316 I 0.823
ENSCAFG00000017494 Canis familiaris ENSCAFG00000017494 I 0.766
ENSCAFG00000018186 Canis familiaris ENSCAFG00000018186 I 0.852
ENSCAFG00000019104 Canis familiaris ENSCAFG00000019104 I 0.852
ENSCAFG00000019118 Canis familiaris ENSCAFG00000019118 I 0.888
ENSCAFG00000020238 Canis familiaris ENSCAFG00000020238 I 0.873
XM_852631.1 Canis familiaris ENSCAFG00000023680 I 0.936
ENSCAFG00000024951 Canis familiaris ENSCAFG00000024951 I 0.846
HNRNPA2B1 Choloepus hoffmanni ENSCHOG00000013832 I 0.724
ENSCJAG00000000095 Callithrix jacchus ENSCJAG00000000095 I 0.887
ENSCJAG00000001353 Callithrix jacchus ENSCJAG00000001353 I 0.901
LOC100409067 Callithrix jacchus ENSCJAG00000003245 I 0.950
LOC100397230 Callithrix jacchus ENSCJAG00000004031 I 0.964
ENSCJAG00000004902 Callithrix jacchus ENSCJAG00000004902 I 0.908
ENSCJAG00000005326 Callithrix jacchus ENSCJAG00000005326 I 0.797
LOC100401647 Callithrix jacchus ENSCJAG00000007908 I 0.731
ENSCJAG00000008584 Callithrix jacchus ENSCJAG00000008584 I 0.794
LOC100413454 Callithrix jacchus ENSCJAG00000009030 I 0.964
ENSCJAG00000009723 Callithrix jacchus ENSCJAG00000009723 I 0.900
LOC100397230 Callithrix jacchus ENSCJAG00000014791 I 0.901
LOC100397230 Callithrix jacchus ENSCJAG00000018864 I 0.971
ENSCJAG00000019479 Callithrix jacchus ENSCJAG00000019479 I 0.971
ENSCJAG00000021872 Callithrix jacchus ENSCJAG00000021872 I 0.731
LOC100411573 Callithrix jacchus ENSCJAG00000023383 I 0.844
LOC100410389 Callithrix jacchus ENSCJAG00000023392 I 0.943
ENSCJAG00000032417 Callithrix jacchus ENSCJAG00000032417 I 0.907
ENSCJAG00000033856 Callithrix jacchus ENSCJAG00000033856 I 0.971
ENSCPOG00000004251 Cavia porcellus ENSCPOG00000004251 I 0.844
HNRNPA3 Cavia porcellus ENSCPOG00000011301 I 0.844
ENSCPOG00000021077 Cavia porcellus ENSCPOG00000021077 I 0.943
hnrnpa3 Danio rerio ENSDARG00000059351 I 0.793
ENSDNOG00000009228 Dasypus novemcinctus ENSDNOG00000009228 I 0.971
HNRNPA2B1 Dasypus novemcinctus ENSDNOG00000012928 I 0.731
HNRNPA3 Dasypus novemcinctus ENSDNOG00000019022 I 0.844
Hnrnpa2b1 Dipodomys ordii ENSDORG00000005482 I 0.731
Hnrnpa1 Dipodomys ordii ENSDORG00000010628 I 0.879
LOC100068539 Equus caballus ENSECAG00000000782 I 0.731
LOC100054206 Equus caballus ENSECAG00000006699 I 0.880
Q6DTK6_HORSE Equus caballus ENSECAG00000008676 I 0.971
LOC100066794 Equus caballus ENSECAG00000023237 I 0.843
ENSEEUG00000000494 Erinaceus europaeus ENSEEUG00000000494 I 0.921
ENSEEUG00000006130 Erinaceus europaeus ENSEEUG00000006130 I 0.957
HNRNPA2B1 Echinops telfairi ENSETEG00000018577 I 0.731
ENSFCAG00000010150 Felis catus ENSFCAG00000010150 I 0.971
HNRNPA3 Felis catus ENSFCAG00000012146 I 0.843
HNRNPA2B1 Homo sapiens ENSG00000122566 D 0.731
HNRNPA1 Homo sapiens ENSG00000135486 D 0.971
HNRNPA1L2 Homo sapiens ENSG00000139675 D 0.950
HNRNPA3 Homo sapiens ENSG00000170144 I 0.844
ENSG00000215492 Homo sapiens ENSG00000215492 I 0.971
ENSGACG00000009435 Gasterosteus aculeatus ENSGACG00000009435 I 0.879
HNRPA3 Gallus gallus ENSGALG00000009250 I 0.843
Q5ZME1_CHICK Gallus gallus ENSGALG00000011036 I 0.731
HNRNPA1 Gorilla gorilla ENSGGOG00000003040 I 0.971
HNRNPA3 Gorilla gorilla ENSGGOG00000006130 I 0.844
HNRNPA2B1 Gorilla gorilla ENSGGOG00000017072 I 0.731
ENSGGOG00000025381 Gorilla gorilla ENSGGOG00000025381 I 0.957
ENSGGOG00000025446 Gorilla gorilla ENSGGOG00000025446 I 0.779
HNRNPA2B1 Loxodonta africana ENSLAFG00000006902 I 0.731
ENSLAFG00000026657 Loxodonta africana ENSLAFG00000026657 I 0.943
ENSLAFG00000029587 Loxodonta africana ENSLAFG00000029587 I 0.964
ENSLAFG00000030769 Loxodonta africana ENSLAFG00000030769 I 0.921
HNRNPA3 Macropus eugenii ENSMEUG00000013622 I 0.844
ENSMEUG00000014479 Macropus eugenii ENSMEUG00000014479 I 0.731
ENSMGAG00000007630 Meleagris gallopavo ENSMGAG00000007630 I 0.929
HNRNPA3 Meleagris gallopavo ENSMGAG00000009565 I 0.843
HNRNPA2B1 Meleagris gallopavo ENSMGAG00000010635 I 0.731
ENSMLUG00000000648 Myotis lucifugus ENSMLUG00000000648 I 0.971
ENSMLUG00000000788 Myotis lucifugus ENSMLUG00000000788 I 0.880
ENSMLUG00000003232 Myotis lucifugus ENSMLUG00000003232 I 0.957
HNRNPA3 Myotis lucifugus ENSMLUG00000003906 I 0.844
HNRNPA2B1 Myotis lucifugus ENSMLUG00000007578 I 0.731
ENSMMUG00000001858 Macaca mulatta ENSMMUG00000001858 I 0.844
HNRNPA2B1 Macaca mulatta ENSMMUG00000003619 I 0.731
ENSMMUG00000005750 Macaca mulatta ENSMMUG00000005750 I 0.759
ENSMMUG00000007695 Macaca mulatta ENSMMUG00000007695 I 0.887
LOC710473 Macaca mulatta ENSMMUG00000007887 I 0.964
LOC710473 Macaca mulatta ENSMMUG00000007928 I 0.950
ENSMMUG00000008337 Macaca mulatta ENSMMUG00000008337 I 0.786
XR_011984.1 Macaca mulatta ENSMMUG00000011640 I 0.778
LOC710473 Macaca mulatta ENSMMUG00000012989 I 0.971
ENSMMUG00000013424 Macaca mulatta ENSMMUG00000013424 I 0.786
ENSMMUG00000022448 Macaca mulatta ENSMMUG00000022448 I 0.808
LOC710473 Macaca mulatta ENSMMUG00000029402 I 0.964
ROA1_MACMU Macaca mulatta ENSMMUG00000031613 I 0.950
HNRNPA2B1 Monodelphis domestica ENSMODG00000000603 I 0.731
HNRNPA3 Monodelphis domestica ENSMODG00000019803 I 0.844
ENSMODG00000023422 Monodelphis domestica ENSMODG00000023422 I 0.845
Hnrnpa2b1 Mus musculus ENSMUSG00000004980 I 0.731
ENSMUSG00000021927 Mus musculus ENSMUSG00000021927 I 0.943
Hnrnpa1 Mus musculus ENSMUSG00000046434 I 0.971
Hnrnpa3 Mus musculus ENSMUSG00000059005 I 0.844
Gm8991 Mus musculus ENSMUSG00000059179 I 0.843
HNRNPA2B1 Ornithorhynchus anatinus ENSOANG00000009159 I 0.731
HNRNPA3 Oryctolagus cuniculus ENSOCUG00000002743 I 0.837
ENSOCUG00000010985 Oryctolagus cuniculus ENSOCUG00000010985 I 0.957
ENSOCUG00000013350 Oryctolagus cuniculus ENSOCUG00000013350 I 0.971
ENSOCUG00000021006 Oryctolagus cuniculus ENSOCUG00000021006 I 0.936
ENSOCUG00000021007 Oryctolagus cuniculus ENSOCUG00000021007 I 0.957
ENSOCUG00000022568 Oryctolagus cuniculus ENSOCUG00000022568 I 0.964
ENSOCUG00000022668 Oryctolagus cuniculus ENSOCUG00000022668 I 0.943
ENSOCUG00000023322 Oryctolagus cuniculus ENSOCUG00000023322 I 0.957
ENSOCUG00000023444 Oryctolagus cuniculus ENSOCUG00000023444 I 0.964
ENSOCUG00000023674 Oryctolagus cuniculus ENSOCUG00000023674 I 0.971
HNRNPA2B1 Oryctolagus cuniculus ENSOCUG00000026859 I 0.731
ENSOCUG00000028124 Oryctolagus cuniculus ENSOCUG00000028124 I 0.957
ENSOGAG00000002398 Otolemur garnettii ENSOGAG00000002398 I 0.740
ENSOGAG00000009945 Otolemur garnettii ENSOGAG00000009945 I 0.950
ENSOGAG00000017179 Otolemur garnettii ENSOGAG00000017179 I 0.772
ENSOPRG00000006107 Ochotona princeps ENSOPRG00000006107 I 0.964
HNRNPA2B1 Ochotona princeps ENSOPRG00000011698 I 0.000
ENSORLG00000008001 Oryzias latipes ENSORLG00000008001 I 0.864
HNRNPA3 Oryzias latipes ENSORLG00000017561 I 0.782
ENSPPYG00000012967 Pongo pygmaeus ENSPPYG00000012967 I 0.801
ENSPPYG00000017715 Pongo pygmaeus ENSPPYG00000017715 I 0.731
ENSPPYG00000017853 Pongo pygmaeus ENSPPYG00000017853 I 0.929
ROA1_PANTR Pan troglodytes ENSPTRG00000005035 I 0.971
HNRNPA3 Pan troglodytes ENSPTRG00000012676 I 0.844
HNRNPA2B1 Pan troglodytes ENSPTRG00000019002 I 0.731
ROA1_PANTR Pan troglodytes ENSPTRG00000028756 I 0.971
ROA1_PANTR Pan troglodytes ENSPTRG00000031363 I 0.971
HNRNPA1L2 Pan troglodytes ENSPTRG00000032520 I 0.971
ENSPVAG00000000322 Pteropus vampyrus ENSPVAG00000000322 I 0.971
HNRNPA2B1 Pteropus vampyrus ENSPVAG00000006296 I 0.731
HNRNPA3 Pteropus vampyrus ENSPVAG00000010380 I 0.844
LOC100360986 Rattus norvegicus ENSRNOG00000001556 I 0.844
ENSRNOG00000005951 Rattus norvegicus ENSRNOG00000005951 I 0.914
Hnrnpa2b1 Rattus norvegicus ENSRNOG00000011175 I 0.731
D4A1X0_RAT Rattus norvegicus ENSRNOG00000021254 I 0.707
D4AD23_RAT Rattus norvegicus ENSRNOG00000025891 I 0.894
ROA3_RAT Rattus norvegicus ENSRNOG00000027001 I 0.844
D4A491_RAT Rattus norvegicus ENSRNOG00000029531 I 0.936
D3ZTB7_RAT Rattus norvegicus ENSRNOG00000031608 I 0.821
ENSRNOG00000033182 Rattus norvegicus ENSRNOG00000033182 I 0.915
Hnrnpa1 Rattus norvegicus ENSRNOG00000036839 I 0.971
D3ZXA3_RAT Rattus norvegicus ENSRNOG00000038905 I 0.836
ENSRNOG00000039436 Rattus norvegicus ENSRNOG00000039436 I 0.936
ENSSARG00000008946 Sorex araneus ENSSARG00000008946 I 0.879
ENSSSCG00000000288 Sus scrofa ENSSSCG00000000288 I 0.971
ENSSSCG00000012503 Sus scrofa ENSSSCG00000012503 I 0.000
ENSSSCG00000013557 Sus scrofa ENSSSCG00000013557 I 0.000
ENSSSCG00000013561 Sus scrofa ENSSSCG00000013561 I 0.000
ENSSSCG00000013607 Sus scrofa ENSSSCG00000013607 I 0.000
ENSSSCG00000015836 Sus scrofa ENSSSCG00000015836 I 0.717
HNRNPA3 Sus scrofa ENSSSCG00000015988 I 0.844
ENSSSCG00000016710 Sus scrofa ENSSSCG00000016710 I 0.000
ENSSTOG00000006202 Spermophilus tridecemlineatus ENSSTOG00000006202 I 0.731
ENSSTOG00000009092 Spermophilus tridecemlineatus ENSSTOG00000009092 I 0.710
HNRNPA2B1 Tupaia belangeri ENSTBEG00000003219 I 0.000
ENSTBEG00000008238 Tupaia belangeri ENSTBEG00000008238 I 0.971
ENSTBEG00000016272 Tupaia belangeri ENSTBEG00000016272 I 0.922
HNRNPA2B1 Taeniopygia guttata ENSTGUG00000002869 I 0.738
HNRNPA3 Taeniopygia guttata ENSTGUG00000008996 I 0.843
ENSTNIG00000015047 Tetraodon nigroviridis ENSTNIG00000015047 I 0.821
Q1KKU4_FUGRU Takifugu rubripes ENSTRUG00000002190 I 0.836
HNRNPA2B1 Tarsius syrichta ENSTSYG00000008124 N 0.000
HNRNPA2B1 Tursiops truncatus ENSTTRG00000000709 I 0.731
ENSTTRG00000004505 Tursiops truncatus ENSTTRG00000004505 I 0.971
HNRNPA3 Tursiops truncatus ENSTTRG00000014225 I 0.844
HNRNPA2B1 Vicugna pacos ENSVPAG00000010417 I 0.000
hnrnpa3 Xenopus tropicalis ENSXETG00000001806 I 0.850
hnrnpa2b1 Xenopus tropicalis ENSXETG00000012170 I 0.710
hnrnpa1 Xenopus tropicalis ENSXETG00000021277 I 0.900
P17130 Xenopus laevis P17130 I 0.879
P51968 Xenopus laevis P51968 I 0.850
P51989 Xenopus laevis P51989 I 0.724
P51990 Xenopus laevis P51990 I 0.710
P51992 Xenopus laevis P51992 I 0.831