elavl4 (Danio rerio)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSDARG00000045639 T36162_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
ELAVL4
M315_0.6 		Homo sapiens Sequence logo not available UUUUUUUUUWAAA RIP-chip
Cook et al.(2011)
619_19846595.2 		0.977
ELAVL4
M314_0.6 		Homo sapiens Sequence logo not available KUUUGUUUKKUUU RIP-chip
Cook et al.(2011)
619_19846595.1 		0.977
ELAVL4
M313_0.6 		Homo sapiens Sequence logo not available CYCUCCYUCYCYC RIP-chip
Cook et al.(2011)
619_19846595 		0.977
ELAVL2
M330_0.6 		Homo sapiens RWUUUAUUUWR SELEX
Cook et al.(2011)
784_7972035 		0.939
ELAVL2
M329_0.6 		Homo sapiens RWUUUAUUUWR SELEX
Cook et al.(2011)
783_7972035 		0.939
ELAVL2
M328_0.6 		Homo sapiens MUYCUUUWUWUUY SELEX
Cook et al.(2011)
782_8497264 		0.939
ELAVL1
M127_0.6 		Homo sapiens UUKRUUU RNAcompete
Ray et al.(2013)
RNCMPT00136 		0.771
ELAVL1
M031_0.6 		Homo sapiens UUDUUUU RNAcompete
Ray et al.(2013)
RNCMPT00032 		0.771
ELAVL1
M327_0.6 		Homo sapiens Sequence logo not available KKNWWDNNNUKNNUUNUNNH RIP-chip
Cook et al.(2011)
714_14981256 		0.771
ELAVL1
M112_0.6 		Homo sapiens UUURKUU RNAcompete
Ray et al.(2013)
RNCMPT00117 		0.771
ELAVL1
M232_0.6 		Homo sapiens UUUUUUK RNAcompete
Ray et al.(2013)
RNCMPT00274 		0.771
ELAVL1
M108_0.6 		Homo sapiens UUWGUUU RNAcompete
Ray et al.(2013)
RNCMPT00112 		0.771
Rbp9
M124_0.6 		Drosophila melanogaster UUDDGUU RNAcompete
Ray et al.(2013)
RNCMPT00132 		0.736
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSDARP00000032015 RRM 46 116
ENSDARP00000032015 RRM 132 203
ENSDARP00000032015 RRM 286 356
ENSDARP00000098304 RRM 76 146
ENSDARP00000103005 RRM 90 160

Links

Other RRM family RBPs
Other Danio rerio RBPs

193 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
AAA96942 Xenopus laevis AAA96942 I 0.766
AAA96943 Xenopus laevis AAA96943 I 0.935
AAA96944 Xenopus laevis AAA96944 I 0.902
AAA96945 Xenopus laevis AAA96945 I 0.981
AAH86269 Xenopus laevis AAH86269 I 0.762
AAH94189 Xenopus laevis AAH94189 I 0.939
AAH99348 Xenopus laevis AAH99348 I 0.981
AAI16460 Xenopus laevis AAI16460 I 0.729
AAI69769 Xenopus laevis AAI69769 I 0.902
AAI70539 Xenopus laevis AAI70539 I 0.939
AGAP000965 Anopheles gambiae AGAP000965 I 0.748
amel4_ncbi_hmm5219 Apis mellifera amel4_ncbi_hmm5219 I 0.776
Ame_R004766 Ailuropoda melanoleuca Ame_R004766 I 0.939
Ame_R009570 Ailuropoda melanoleuca Ame_R009570 I 0.902
Ame_R009760 Ailuropoda melanoleuca Ame_R009760 I 0.977
Ame_R010167 Ailuropoda melanoleuca Ame_R010167 I 0.771
CAA59430 Xenopus laevis CAA59430 I 0.930
CBF67567 Xenopus laevis CBF67567 I 0.981
CBU92440 Xenopus laevis CBU92440 I 0.981
CPIJ000395 Culex quinquefasciatus CPIJ000395 I 0.728
CPIJ016143 Culex quinquefasciatus CPIJ016143 I 0.744
CpipJ_CPIJ000395 Culex pipiens CpipJ_CPIJ000395 I 0.728
CpipJ_CPIJ016143 Culex pipiens CpipJ_CPIJ016143 I 0.744
ELAVL4 Anolis carolinensis ENSACAG00000004527 I 0.977
ELAVL3 Anolis carolinensis ENSACAG00000016958 I 0.898
ELAVL2 Anolis carolinensis ENSACAG00000017521 I 0.939
Q3ZCE2_BOVIN Bos taurus ENSBTAG00000000613 I 0.766
ELAVL3 Bos taurus ENSBTAG00000014412 I 0.902
A2VDK5_BOVIN Bos taurus ENSBTAG00000021046 I 0.977
ELAVL2 Canis familiaris ENSCAFG00000001688 I 0.939
ELAVL4 Canis familiaris ENSCAFG00000003927 I 0.977
ELAVL3 Canis familiaris ENSCAFG00000017350 I 0.902
ENSCAFG00000018353 Canis familiaris ENSCAFG00000018353 I 0.771
ELAVL2 Choloepus hoffmanni ENSCHOG00000000635 I 0.799
ELAVL4 Choloepus hoffmanni ENSCHOG00000002464 I 0.977
ELAVL2 Callithrix jacchus ENSCJAG00000008064 I 0.939
ELAVL4 Callithrix jacchus ENSCJAG00000013725 I 0.977
ENSCPOG00000002044 Cavia porcellus ENSCPOG00000002044 I 0.977
ELAVL2 Cavia porcellus ENSCPOG00000010472 I 0.939
ENSCPOG00000022816 Cavia porcellus ENSCPOG00000022816 I 0.790
ENSCSAVG00000003440 Ciona savignyi ENSCSAVG00000003440 I 0.726
elavl3 Danio rerio ENSDARG00000014420 I 0.907
hug Danio rerio ENSDARG00000016405 I 0.791
elavl1 Danio rerio ENSDARG00000038695 I 0.772
elavl2 Danio rerio ENSDARG00000040732 I 0.911
ELAVL4 Dasypus novemcinctus ENSDNOG00000002932 I 0.977
ELAVL1 Dasypus novemcinctus ENSDNOG00000008797 I 0.762
ELAVL2 Dasypus novemcinctus ENSDNOG00000016605 I 0.766
Elavl3 Dipodomys ordii ENSDORG00000002538 I 0.888
Elavl1 Dipodomys ordii ENSDORG00000009158 I 0.771
Elavl2 Dipodomys ordii ENSDORG00000010437 I 0.939
Elavl4 Dipodomys ordii ENSDORG00000012729 I 0.977
LOC100060819 Equus caballus ENSECAG00000019459 I 0.766
ELAVL2 Equus caballus ENSECAG00000020142 I 0.939
LOC100056901 Equus caballus ENSECAG00000020594 I 0.823
LOC100051268 Equus caballus ENSECAG00000022284 I 0.977
ELAVL2 Erinaceus europaeus ENSEEUG00000008733 I 0.766
ELAVL4 Erinaceus europaeus ENSEEUG00000008766 I 0.977
ELAVL2 Echinops telfairi ENSETEG00000006134 I 0.939
ELAVL4 Echinops telfairi ENSETEG00000013779 I 0.832
ELAVL1 Felis catus ENSFCAG00000014947 I 0.771
ELAVL1 Homo sapiens ENSG00000066044 D 0.771
ELAVL2 Homo sapiens ENSG00000107105 D 0.939
ELAVL4 Homo sapiens ENSG00000162374 D 0.977
ELAVL3 Homo sapiens ENSG00000196361 I 0.902
ELAVL1 Gasterosteus aculeatus ENSGACG00000010657 I 0.777
ELAVL4 Gasterosteus aculeatus ENSGACG00000011152 I 0.981
ELAVL1 Gasterosteus aculeatus ENSGACG00000013329 I 0.726
ELAVL3 Gasterosteus aculeatus ENSGACG00000013839 I 0.907
ELAVL2 Gasterosteus aculeatus ENSGACG00000019484 I 0.916
Q9PW24_CHICK Gallus gallus ENSGALG00000000726 I 0.766
Q9PW22_CHICK Gallus gallus ENSGALG00000010533 I 0.977
ELAVL2 Gallus gallus ENSGALG00000015799 I 0.925
ELAVL4 Gorilla gorilla ENSGGOG00000000634 I 0.977
ELAVL2 Gorilla gorilla ENSGGOG00000003678 I 0.939
ELAVL1 Gorilla gorilla ENSGGOG00000006100 I 0.771
ELAVL3 Gorilla gorilla ENSGGOG00000008635 I 0.902
ELAVL4 Loxodonta africana ENSLAFG00000001087 I 0.977
ELAVL1 Loxodonta africana ENSLAFG00000004219 I 0.771
ELAVL3 Loxodonta africana ENSLAFG00000005013 I 0.902
ELAVL2 Loxodonta africana ENSLAFG00000009938 I 0.939
ELAVL2 Macropus eugenii ENSMEUG00000006499 I 0.763
ELAVL4 Macropus eugenii ENSMEUG00000007145 I 0.977
ELAVL3 Macropus eugenii ENSMEUG00000016706 I 0.902
ELAVL1 Meleagris gallopavo ENSMGAG00000001015 I 0.766
ELAVL4 Meleagris gallopavo ENSMGAG00000010928 I 0.972
ELAVL2 Microcebus murinus ENSMICG00000001558 I 0.749
ELAVL4 Microcebus murinus ENSMICG00000003286 I 0.977
ELAVL1 Microcebus murinus ENSMICG00000009699 I 0.771
ELAVL3 Microcebus murinus ENSMICG00000016528 N 0.861
ELAVL4 Myotis lucifugus ENSMLUG00000006226 I 0.977
ELAVL1 Myotis lucifugus ENSMLUG00000008101 I 0.776
ELAVL2 Myotis lucifugus ENSMLUG00000014210 I 0.935
ELAVL1 Macaca mulatta ENSMMUG00000006544 I 0.771
LOC708195 Macaca mulatta ENSMMUG00000010038 I 0.939
ELAVL4 Macaca mulatta ENSMMUG00000021933 I 0.977
ELAVL4 Monodelphis domestica ENSMODG00000001300 I 0.977
ENSMODG00000003850 Monodelphis domestica ENSMODG00000003850 I 0.750
LOC100015949 Monodelphis domestica ENSMODG00000003936 I 0.939
ELAVL1 Monodelphis domestica ENSMODG00000005041 I 0.771
ELAVL3 Monodelphis domestica ENSMODG00000006653 I 0.870
Elavl3 Mus musculus ENSMUSG00000003410 I 0.893
Elavl2 Mus musculus ENSMUSG00000008489 I 0.939
Elavl4 Mus musculus ENSMUSG00000028546 I 1.000
Elavl1 Mus musculus ENSMUSG00000040028 I 0.771
ELAVL2 Ornithorhynchus anatinus ENSOANG00000009634 I 0.823
ELAVL2 Oryctolagus cuniculus ENSOCUG00000005891 I 0.939
D7R608_RABIT Oryctolagus cuniculus ENSOCUG00000015871 I 0.780
ELAVL4 Oryctolagus cuniculus ENSOCUG00000016262 I 0.977
ELAVL3 Otolemur garnettii ENSOGAG00000007072 I 0.902
ELAVL1 Otolemur garnettii ENSOGAG00000012877 I 0.771
ELAVL2 Otolemur garnettii ENSOGAG00000016228 I 0.794
ELAVL4 Otolemur garnettii ENSOGAG00000016990 I 0.977
ELAVL1 Ochotona princeps ENSOPRG00000009691 I 0.780
ELAVL2 Ochotona princeps ENSOPRG00000012874 I 0.939
ELAVL4 Ochotona princeps ENSOPRG00000015300 I 0.977
ELAVL1 Oryzias latipes ENSORLG00000000087 I 0.721
ELAVL2 Oryzias latipes ENSORLG00000004217 I 0.916
ELAVL3 Oryzias latipes ENSORLG00000005379 I 0.907
ELAVL1 Oryzias latipes ENSORLG00000012435 I 0.772
ELAVL4 Oryzias latipes ENSORLG00000017130 I 0.986
ELAVL4 Procavia capensis ENSPCAG00000008215 I 0.977
ELAVL2 Procavia capensis ENSPCAG00000014998 I 0.865
ENSPPYG00000001367 Pongo pygmaeus ENSPPYG00000001367 I 0.977
ENSPPYG00000009496 Pongo pygmaeus ENSPPYG00000009496 I 0.771
ENSPPYG00000019166 Pongo pygmaeus ENSPPYG00000019166 I 0.939
ELAVL4 Pan troglodytes ENSPTRG00000000723 I 0.977
ELAVL1 Pan troglodytes ENSPTRG00000010413 I 0.771
ELAVL3 Pan troglodytes ENSPTRG00000010506 I 0.884
ELAVL2 Pan troglodytes ENSPTRG00000020830 I 0.939
ELAVL2 Pteropus vampyrus ENSPVAG00000002688 I 0.939
ELAVL4 Pteropus vampyrus ENSPVAG00000003632 I 0.884
ELAVL3 Pteropus vampyrus ENSPVAG00000014893 I 0.902
Elavl1 Rattus norvegicus ENSRNOG00000001069 I 0.771
Elavl2 Rattus norvegicus ENSRNOG00000006853 I 0.939
Elavl3 Rattus norvegicus ENSRNOG00000013752 I 0.893
Elavl4 Rattus norvegicus ENSRNOG00000023601 I 0.977
ELAVL2 Sorex araneus ENSSARG00000005702 I 0.939
ELAVL3 Sorex araneus ENSSARG00000005949 I 0.753
ELAVL4 Sorex araneus ENSSARG00000010733 I 0.977
ELAVL2 Sus scrofa ENSSSCG00000005130 I 0.939
ELAVL1 Sus scrofa ENSSSCG00000013592 I 0.776
ELAVL3 Sus scrofa ENSSSCG00000013617 I 0.902
ELAVL4 Spermophilus tridecemlineatus ENSSTOG00000002834 I 0.800
ELAVL2 Spermophilus tridecemlineatus ENSSTOG00000007792 I 0.730
ELAVL1 Spermophilus tridecemlineatus ENSSTOG00000009130 I 0.757
ELAVL3 Tupaia belangeri ENSTBEG00000006133 I 0.767
ELAVL4 Tupaia belangeri ENSTBEG00000011730 I 0.832
ELAVL2 Tupaia belangeri ENSTBEG00000017759 I 0.721
ELAVL1 Taeniopygia guttata ENSTGUG00000000118 I 0.766
ELAVL2 Taeniopygia guttata ENSTGUG00000001349 I 0.907
ELAVL4 Taeniopygia guttata ENSTGUG00000008597 I 0.977
ELAVL2 Tetraodon nigroviridis ENSTNIG00000011312 I 0.916
ELAVL4 Tetraodon nigroviridis ENSTNIG00000015485 I 0.981
ELAVL3 Tetraodon nigroviridis ENSTNIG00000018572 I 0.907
ELAVL1 Tetraodon nigroviridis ENSTNIG00000019823 I 0.753
ELAVL4 Takifugu rubripes ENSTRUG00000000523 I 0.981
ELAVL1 Takifugu rubripes ENSTRUG00000004559 I 0.749
ELAVL1 Takifugu rubripes ENSTRUG00000007296 I 0.726
ELAVL2 Takifugu rubripes ENSTRUG00000007867 I 0.911
ELAVL3 Takifugu rubripes ENSTRUG00000010719 I 0.907
ELAVL4 Tarsius syrichta ENSTSYG00000004130 I 0.977
ELAVL1 Tarsius syrichta ENSTSYG00000008248 I 0.771
ELAVL2 Tarsius syrichta ENSTSYG00000013066 I 0.902
ELAVL3 Tursiops truncatus ENSTTRG00000001789 I 0.902
ELAVL2 Tursiops truncatus ENSTTRG00000011656 I 0.935
ELAVL2 Vicugna pacos ENSVPAG00000005109 I 0.939
ELAVL4 Vicugna pacos ENSVPAG00000011606 I 0.977
elavl4 Xenopus tropicalis ENSXETG00000008680 I 0.981
elavl1 Xenopus tropicalis ENSXETG00000008752 I 0.766
elavl2 Xenopus tropicalis ENSXETG00000009387 I 0.780
elavl3 Xenopus tropicalis ENSXETG00000016741 I 0.902
estExt_Genewise1Plus.C_1660036 Capitella teleta estExt_Genewise1Plus.C_1660036 I 0.726
Rbp9 Drosophila melanogaster FBgn0010263 D 0.743
GF14992 Drosophila ananassae FBgn0092017 I 0.731
GG24901 Drosophila erecta FBgn0117030 I 0.731
GH13638 Drosophila grimshawi FBgn0121114 I 0.734
GI11879 Drosophila mojavensis FBgn0134637 I 0.731
GL26299 Drosophila persimilis FBgn0163881 I 0.738
GM18380 Drosophila sechellia FBgn0173287 I 0.731
GJ13991 Drosophila virilis FBgn0201209 I 0.731
GK14865 Drosophila willistoni FBgn0216870 I 0.731
GE18193 Drosophila yakuba FBgn0235624 I 0.731
GA28809-RA Drosophila pseudoobscura FBgn0250168 I 0.731
fgenesh1_pg.C_scaffold_8000205 Daphnia pulex fgenesh1_pg.C_scaffold_8000205 I 0.748
fgenesh2_pg.C_sca_14000012 Lottia gigantea fgenesh2_pg.C_sca_14000012 I 0.757
fgenesh2_pg.scaffold_219000066 Branchiostoma floridae fgenesh2_pg.scaffold_219000066 I 0.777
nasonia_NCBI_hmm330804 Nasonia vitripennis nasonia_NCBI_hmm330804 I 0.776
Q1JQ73 Xenopus laevis Q1JQ73 I 0.729
Q5U259 Xenopus laevis Q5U259 I 0.762
Q91584 Xenopus laevis Q91584 I 0.902
Q91903 Xenopus laevis Q91903 I 0.935