CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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HNRNPA2B1
(
Dasypus novemcinctus
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSDNOG00000012928
T36350_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
HNRNPA2B1
M024_0.6
Homo sapiens
DUAGGGW
RNAcompete
Ray et al.(2013)
RNCMPT00024
1.000
HNRNPA1
M312_0.6
Homo sapiens
Sequence logo not available
UAGGGW
RIP-chip
Cook et al.(2011)
560_17925491
0.814
HNRNPA1
M271_0.6
Homo sapiens
UAGGGW
SELEX
Cook et al.(2011)
23_7510636
0.814
HNRNPA1
M022_0.6
Homo sapiens
DUAGGGW
RNAcompete
Ray et al.(2013)
RNCMPT00022
0.814
HNRNPA1L2
M023_0.6
Homo sapiens
DUAGGGW
RNAcompete
Ray et al.(2013)
RNCMPT00023
0.793
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSDNOP00000010035
RRM
83
152
LFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVE
ENSDNOP00000010035
RRM
174
243
LFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAE
Links
Other
RRM
family RBPs
Other
Dasypus novemcinctus
RBPs
224 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
CJA28798
Caenorhabditis japonica
CJA28798
N
0.000
PTTG_01003
Puccinia triticina
PTTG_01003
N
0.000
PTTG_03581
Puccinia triticina
PTTG_03581
N
0.000
PTTG_03611
Puccinia triticina
PTTG_03611
N
0.000
PTTG_04497
Puccinia triticina
PTTG_04497
N
0.000
PTTG_04681
Puccinia triticina
PTTG_04681
N
0.000
PTTG_05127
Puccinia triticina
PTTG_05127
N
0.000
PTTG_05279
Puccinia triticina
PTTG_05279
N
0.000
PTTG_05310
Puccinia triticina
PTTG_05310
N
0.000
PTTG_05387
Puccinia triticina
PTTG_05387
N
0.000
PTTG_05476
Puccinia triticina
PTTG_05476
N
0.000
PTTG_06000
Puccinia triticina
PTTG_06000
N
0.000
PTTG_06629
Puccinia triticina
PTTG_06629
N
0.000
PTTG_06677
Puccinia triticina
PTTG_06677
N
0.000
PTTG_06885
Puccinia triticina
PTTG_06885
N
0.000
PTTG_07053
Puccinia triticina
PTTG_07053
N
0.000
PTTG_07232
Puccinia triticina
PTTG_07232
N
0.000
PTTG_08329
Puccinia triticina
PTTG_08329
N
0.000
PTTG_08342
Puccinia triticina
PTTG_08342
N
0.000
PTTG_08665
Puccinia triticina
PTTG_08665
N
0.000
PTTG_08960
Puccinia triticina
PTTG_08960
N
0.000
PTTG_08980
Puccinia triticina
PTTG_08980
N
0.000
PTTG_09062
Puccinia triticina
PTTG_09062
N
0.000
PTTG_09362
Puccinia triticina
PTTG_09362
N
0.000
PTTG_09697
Puccinia triticina
PTTG_09697
N
0.000
PTTG_10004
Puccinia triticina
PTTG_10004
N
0.000
PTTG_10119
Puccinia triticina
PTTG_10119
N
0.000
PTTG_10344
Puccinia triticina
PTTG_10344
N
0.000
PTTG_10464
Puccinia triticina
PTTG_10464
N
0.000
PTTG_10645
Puccinia triticina
PTTG_10645
N
0.000
PTTG_10688
Puccinia triticina
PTTG_10688
N
0.000
PTTG_10706
Puccinia triticina
PTTG_10706
N
0.000
PTTG_11204
Puccinia triticina
PTTG_11204
N
0.000