ELAVL2 (Oryzias latipes)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSORLG00000004217 T40114_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
ELAVL2
M330_0.6 		Homo sapiens RWUUUAUUUWR SELEX
Cook et al.(2011)
784_7972035 		0.972
ELAVL2
M329_0.6 		Homo sapiens RWUUUAUUUWR SELEX
Cook et al.(2011)
783_7972035 		0.972
ELAVL2
M328_0.6 		Homo sapiens MUYCUUUWUWUUY SELEX
Cook et al.(2011)
782_8497264 		0.972
ELAVL4
M315_0.6 		Homo sapiens Sequence logo not available UUUUUUUUUWAAA RIP-chip
Cook et al.(2011)
619_19846595.2 		0.938
ELAVL4
M314_0.6 		Homo sapiens Sequence logo not available KUUUGUUUKKUUU RIP-chip
Cook et al.(2011)
619_19846595.1 		0.938
ELAVL4
M313_0.6 		Homo sapiens Sequence logo not available CYCUCCYUCYCYC RIP-chip
Cook et al.(2011)
619_19846595 		0.938
ELAVL1
M327_0.6 		Homo sapiens Sequence logo not available KKNWWDNNNUKNNUUNUNNH RIP-chip
Cook et al.(2011)
714_14981256 		0.788
ELAVL1
M112_0.6 		Homo sapiens UUURKUU RNAcompete
Ray et al.(2013)
RNCMPT00117 		0.788
ELAVL1
M232_0.6 		Homo sapiens UUUUUUK RNAcompete
Ray et al.(2013)
RNCMPT00274 		0.788
ELAVL1
M108_0.6 		Homo sapiens UUWGUUU RNAcompete
Ray et al.(2013)
RNCMPT00112 		0.788
ELAVL1
M127_0.6 		Homo sapiens UUKRUUU RNAcompete
Ray et al.(2013)
RNCMPT00136 		0.788
ELAVL1
M031_0.6 		Homo sapiens UUDUUUU RNAcompete
Ray et al.(2013)
RNCMPT00032 		0.788
Rbp9
M124_0.6 		Drosophila melanogaster UUDDGUU RNAcompete
Ray et al.(2013)
RNCMPT00132 		0.727
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSORLP00000005283 RRM 70 141
ENSORLP00000005283 RRM 157 225
ENSORLP00000005283 RRM 309 379
ENSORLP00000005284 RRM 70 140
ENSORLP00000005284 RRM 156 224
ENSORLP00000005284 RRM 295 365
ENSORLP00000005286 RRM 55 125
ENSORLP00000005286 RRM 141 209
ENSORLP00000005286 RRM 293 363
ENSORLP00000005290 RRM 48 118
ENSORLP00000005290 RRM 134 202
ENSORLP00000005290 RRM 297 367

Links

Other RRM family RBPs
Other Oryzias latipes RBPs

192 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
AAA96942 Xenopus laevis AAA96942 I 0.783
AAA96943 Xenopus laevis AAA96943 I 0.972
AAA96944 Xenopus laevis AAA96944 I 0.897
AAA96945 Xenopus laevis AAA96945 I 0.934
AAH86269 Xenopus laevis AAH86269 I 0.778
AAH94189 Xenopus laevis AAH94189 I 0.976
AAH99348 Xenopus laevis AAH99348 I 0.934
AAI16460 Xenopus laevis AAI16460 I 0.748
AAI69769 Xenopus laevis AAI69769 I 0.897
AAI70539 Xenopus laevis AAI70539 I 0.976
AGAP000965 Anopheles gambiae AGAP000965 I 0.755
amel4_ncbi_hmm5219 Apis mellifera amel4_ncbi_hmm5219 I 0.778
Ame_R004766 Ailuropoda melanoleuca Ame_R004766 I 0.972
Ame_R009570 Ailuropoda melanoleuca Ame_R009570 I 0.892
Ame_R009760 Ailuropoda melanoleuca Ame_R009760 I 0.938
Ame_R010167 Ailuropoda melanoleuca Ame_R010167 I 0.792
CAA59430 Xenopus laevis CAA59430 I 0.967
CBF67567 Xenopus laevis CBF67567 I 0.934
CBU92440 Xenopus laevis CBU92440 I 0.934
CPIJ000395 Culex quinquefasciatus CPIJ000395 I 0.720
CPIJ016143 Culex quinquefasciatus CPIJ016143 I 0.759
CpipJ_CPIJ000395 Culex pipiens CpipJ_CPIJ000395 I 0.720
CpipJ_CPIJ016143 Culex pipiens CpipJ_CPIJ016143 I 0.759
ELAVL4 Anolis carolinensis ENSACAG00000004527 I 0.938
ELAVL3 Anolis carolinensis ENSACAG00000016958 I 0.892
ELAVL2 Anolis carolinensis ENSACAG00000017521 I 0.976
Q3ZCE2_BOVIN Bos taurus ENSBTAG00000000613 I 0.788
ELAVL3 Bos taurus ENSBTAG00000014412 I 0.892
A2VDK5_BOVIN Bos taurus ENSBTAG00000021046 I 0.938
ELAVL2 Canis familiaris ENSCAFG00000001688 I 0.972
ELAVL4 Canis familiaris ENSCAFG00000003927 I 0.938
ELAVL3 Canis familiaris ENSCAFG00000017350 I 0.892
ENSCAFG00000018353 Canis familiaris ENSCAFG00000018353 I 0.792
ELAVL2 Choloepus hoffmanni ENSCHOG00000000635 I 0.830
ELAVL4 Choloepus hoffmanni ENSCHOG00000002464 I 0.938
ELAVL2 Callithrix jacchus ENSCJAG00000008064 I 0.972
ELAVL4 Callithrix jacchus ENSCJAG00000013725 I 0.938
ENSCPOG00000002044 Cavia porcellus ENSCPOG00000002044 I 0.938
ELAVL2 Cavia porcellus ENSCPOG00000010472 I 0.972
ENSCPOG00000022816 Cavia porcellus ENSCPOG00000022816 I 0.745
ENSCSAVG00000003440 Ciona savignyi ENSCSAVG00000003440 I 0.728
elavl3 Danio rerio ENSDARG00000014420 I 0.901
hug Danio rerio ENSDARG00000016405 I 0.811
elavl1 Danio rerio ENSDARG00000038695 I 0.792
elavl2 Danio rerio ENSDARG00000040732 I 0.972
elavl4 Danio rerio ENSDARG00000045639 I 0.916
ELAVL4 Dasypus novemcinctus ENSDNOG00000002932 I 0.938
ELAVL1 Dasypus novemcinctus ENSDNOG00000008797 I 0.787
ELAVL2 Dasypus novemcinctus ENSDNOG00000016605 I 0.792
Elavl3 Dipodomys ordii ENSDORG00000002538 I 0.882
Elavl1 Dipodomys ordii ENSDORG00000009158 I 0.792
Elavl2 Dipodomys ordii ENSDORG00000010437 I 0.972
Elavl4 Dipodomys ordii ENSDORG00000012729 I 0.938
LOC100060819 Equus caballus ENSECAG00000019459 I 0.788
ELAVL2 Equus caballus ENSECAG00000020142 I 0.972
LOC100056901 Equus caballus ENSECAG00000020594 I 0.816
LOC100051268 Equus caballus ENSECAG00000022284 I 0.938
ELAVL2 Erinaceus europaeus ENSEEUG00000008733 I 0.792
ELAVL4 Erinaceus europaeus ENSEEUG00000008766 I 0.938
ELAVL2 Echinops telfairi ENSETEG00000006134 I 0.972
ELAVL4 Echinops telfairi ENSETEG00000013779 I 0.797
ELAVL1 Felis catus ENSFCAG00000014947 I 0.792
ELAVL1 Homo sapiens ENSG00000066044 D 0.792
ELAVL2 Homo sapiens ENSG00000107105 D 0.972
ELAVL4 Homo sapiens ENSG00000162374 D 0.938
ELAVL3 Homo sapiens ENSG00000196361 I 0.892
ELAVL1 Gasterosteus aculeatus ENSGACG00000010657 I 0.786
ELAVL4 Gasterosteus aculeatus ENSGACG00000011152 I 0.929
ELAVL1 Gasterosteus aculeatus ENSGACG00000013329 I 0.745
ELAVL3 Gasterosteus aculeatus ENSGACG00000013839 I 0.901
ELAVL2 Gasterosteus aculeatus ENSGACG00000019484 I 1.000
Q9PW24_CHICK Gallus gallus ENSGALG00000000726 I 0.788
Q9PW22_CHICK Gallus gallus ENSGALG00000010533 I 0.938
ELAVL2 Gallus gallus ENSGALG00000015799 I 0.957
ELAVL4 Gorilla gorilla ENSGGOG00000000634 I 0.938
ELAVL2 Gorilla gorilla ENSGGOG00000003678 I 0.972
ELAVL1 Gorilla gorilla ENSGGOG00000006100 I 0.792
ELAVL3 Gorilla gorilla ENSGGOG00000008635 I 0.892
ELAVL4 Loxodonta africana ENSLAFG00000001087 I 0.938
ELAVL1 Loxodonta africana ENSLAFG00000004219 I 0.792
ELAVL3 Loxodonta africana ENSLAFG00000005013 I 0.892
ELAVL2 Loxodonta africana ENSLAFG00000009938 I 0.972
ELAVL2 Macropus eugenii ENSMEUG00000006499 I 0.802
ELAVL4 Macropus eugenii ENSMEUG00000007145 I 0.938
ELAVL3 Macropus eugenii ENSMEUG00000016706 I 0.897
ELAVL1 Meleagris gallopavo ENSMGAG00000001015 I 0.788
ELAVL4 Meleagris gallopavo ENSMGAG00000010928 I 0.934
ELAVL2 Microcebus murinus ENSMICG00000001558 I 0.769
ELAVL4 Microcebus murinus ENSMICG00000003286 I 0.938
ELAVL1 Microcebus murinus ENSMICG00000009699 I 0.792
ELAVL4 Myotis lucifugus ENSMLUG00000006226 I 0.938
ELAVL1 Myotis lucifugus ENSMLUG00000008101 I 0.797
ELAVL2 Myotis lucifugus ENSMLUG00000014210 I 0.967
ELAVL1 Macaca mulatta ENSMMUG00000006544 I 0.792
LOC708195 Macaca mulatta ENSMMUG00000010038 I 0.972
ELAVL4 Macaca mulatta ENSMMUG00000021933 I 0.938
ELAVL4 Monodelphis domestica ENSMODG00000001300 I 0.938
ENSMODG00000003850 Monodelphis domestica ENSMODG00000003850 I 0.729
LOC100015949 Monodelphis domestica ENSMODG00000003936 I 0.976
ELAVL1 Monodelphis domestica ENSMODG00000005041 I 0.792
ELAVL3 Monodelphis domestica ENSMODG00000006653 I 0.868
Elavl3 Mus musculus ENSMUSG00000003410 I 0.882
Elavl2 Mus musculus ENSMUSG00000008489 I 0.972
Elavl4 Mus musculus ENSMUSG00000028546 I 0.938
Elavl1 Mus musculus ENSMUSG00000040028 I 0.792
ELAVL2 Ornithorhynchus anatinus ENSOANG00000009634 I 0.863
ELAVL2 Oryctolagus cuniculus ENSOCUG00000005891 I 0.972
D7R608_RABIT Oryctolagus cuniculus ENSOCUG00000015871 I 0.802
ELAVL4 Oryctolagus cuniculus ENSOCUG00000016262 I 0.938
ELAVL3 Otolemur garnettii ENSOGAG00000007072 I 0.892
ELAVL1 Otolemur garnettii ENSOGAG00000012877 I 0.792
ELAVL2 Otolemur garnettii ENSOGAG00000016228 I 0.825
ELAVL4 Otolemur garnettii ENSOGAG00000016990 I 0.938
ELAVL1 Ochotona princeps ENSOPRG00000009691 I 0.802
ELAVL2 Ochotona princeps ENSOPRG00000012874 I 0.972
ELAVL4 Ochotona princeps ENSOPRG00000015300 I 0.938
ELAVL1 Oryzias latipes ENSORLG00000000087 I 0.741
ELAVL3 Oryzias latipes ENSORLG00000005379 I 0.893
ELAVL1 Oryzias latipes ENSORLG00000012435 I 0.797
ELAVL4 Oryzias latipes ENSORLG00000017130 I 0.929
ELAVL4 Procavia capensis ENSPCAG00000008215 I 0.938
ELAVL2 Procavia capensis ENSPCAG00000014998 I 0.901
ENSPPYG00000001367 Pongo pygmaeus ENSPPYG00000001367 I 0.938
ENSPPYG00000009496 Pongo pygmaeus ENSPPYG00000009496 I 0.792
ENSPPYG00000019166 Pongo pygmaeus ENSPPYG00000019166 I 0.972
ELAVL4 Pan troglodytes ENSPTRG00000000723 I 0.938
ELAVL1 Pan troglodytes ENSPTRG00000010413 I 0.792
ELAVL3 Pan troglodytes ENSPTRG00000010506 I 0.873
ELAVL2 Pan troglodytes ENSPTRG00000020830 I 0.972
ELAVL2 Pteropus vampyrus ENSPVAG00000002688 I 0.972
ELAVL4 Pteropus vampyrus ENSPVAG00000003632 I 0.858
ELAVL3 Pteropus vampyrus ENSPVAG00000014893 I 0.892
Elavl1 Rattus norvegicus ENSRNOG00000001069 I 0.792
Elavl2 Rattus norvegicus ENSRNOG00000006853 I 0.972
Elavl3 Rattus norvegicus ENSRNOG00000013752 I 0.882
Elavl4 Rattus norvegicus ENSRNOG00000023601 I 0.938
ELAVL2 Sorex araneus ENSSARG00000005702 I 0.972
ELAVL3 Sorex araneus ENSSARG00000005949 I 0.741
ELAVL4 Sorex araneus ENSSARG00000010733 I 0.938
ELAVL2 Sus scrofa ENSSSCG00000005130 I 0.972
ELAVL1 Sus scrofa ENSSSCG00000013592 I 0.797
ELAVL3 Sus scrofa ENSSSCG00000013617 I 0.892
ELAVL4 Spermophilus tridecemlineatus ENSSTOG00000002834 I 0.769
ELAVL2 Spermophilus tridecemlineatus ENSSTOG00000007792 I 0.750
ELAVL1 Spermophilus tridecemlineatus ENSSTOG00000009130 I 0.778
ELAVL3 Tupaia belangeri ENSTBEG00000006133 I 0.759
ELAVL4 Tupaia belangeri ENSTBEG00000011730 I 0.797
ELAVL2 Tupaia belangeri ENSTBEG00000017759 I 0.745
ELAVL1 Taeniopygia guttata ENSTGUG00000000118 I 0.788
ELAVL2 Taeniopygia guttata ENSTGUG00000001349 I 0.953
ELAVL4 Taeniopygia guttata ENSTGUG00000008597 I 0.938
ELAVL2 Tetraodon nigroviridis ENSTNIG00000011312 I 1.000
ELAVL4 Tetraodon nigroviridis ENSTNIG00000015485 I 0.934
ELAVL3 Tetraodon nigroviridis ENSTNIG00000018572 I 0.888
ELAVL1 Tetraodon nigroviridis ENSTNIG00000019823 I 0.774
ELAVL4 Takifugu rubripes ENSTRUG00000000523 I 0.934
ELAVL1 Takifugu rubripes ENSTRUG00000004559 I 0.769
ELAVL1 Takifugu rubripes ENSTRUG00000007296 I 0.741
ELAVL2 Takifugu rubripes ENSTRUG00000007867 I 0.991
ELAVL3 Takifugu rubripes ENSTRUG00000010719 I 0.901
ELAVL4 Tarsius syrichta ENSTSYG00000004130 I 0.938
ELAVL1 Tarsius syrichta ENSTSYG00000008248 I 0.792
ELAVL2 Tarsius syrichta ENSTSYG00000013066 I 0.929
ELAVL3 Tursiops truncatus ENSTTRG00000001789 I 0.892
ELAVL2 Tursiops truncatus ENSTTRG00000011656 I 0.967
ELAVL2 Vicugna pacos ENSVPAG00000005109 I 0.972
ELAVL4 Vicugna pacos ENSVPAG00000011606 I 0.938
elavl4 Xenopus tropicalis ENSXETG00000008680 I 0.934
elavl1 Xenopus tropicalis ENSXETG00000008752 I 0.783
elavl2 Xenopus tropicalis ENSXETG00000009387 I 0.806
elavl3 Xenopus tropicalis ENSXETG00000016741 I 0.893
estExt_Genewise1Plus.C_1660036 Capitella teleta estExt_Genewise1Plus.C_1660036 I 0.714
Rbp9 Drosophila melanogaster FBgn0010263 D 0.745
GF14992 Drosophila ananassae FBgn0092017 I 0.724
GG24901 Drosophila erecta FBgn0117030 I 0.724
GH13638 Drosophila grimshawi FBgn0121114 I 0.736
GI11879 Drosophila mojavensis FBgn0134637 I 0.724
GL26299 Drosophila persimilis FBgn0163881 I 0.741
GM18380 Drosophila sechellia FBgn0173287 I 0.724
GJ13991 Drosophila virilis FBgn0201209 I 0.724
GK14865 Drosophila willistoni FBgn0216870 I 0.724
GE18193 Drosophila yakuba FBgn0235624 I 0.724
GA28809-RA Drosophila pseudoobscura FBgn0250168 I 0.724
fgenesh1_pg.C_scaffold_8000205 Daphnia pulex fgenesh1_pg.C_scaffold_8000205 I 0.746
fgenesh2_pg.C_sca_14000012 Lottia gigantea fgenesh2_pg.C_sca_14000012 I 0.745
fgenesh2_pg.scaffold_219000066 Branchiostoma floridae fgenesh2_pg.scaffold_219000066 I 0.798
nasonia_NCBI_hmm330804 Nasonia vitripennis nasonia_NCBI_hmm330804 I 0.783
Q1JQ73 Xenopus laevis Q1JQ73 I 0.748
Q5U259 Xenopus laevis Q5U259 I 0.778
Q91584 Xenopus laevis Q91584 I 0.897
Q91903 Xenopus laevis Q91903 I 0.972