ELAVL2 (Spermophilus tridecemlineatus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSSTOG00000007792 T41606_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
ELAVL2
M330_0.6 		Homo sapiens RWUUUAUUUWR SELEX
Cook et al.(2011)
784_7972035 		0.774
ELAVL2
M329_0.6 		Homo sapiens RWUUUAUUUWR SELEX
Cook et al.(2011)
783_7972035 		0.774
ELAVL2
M328_0.6 		Homo sapiens MUYCUUUWUWUUY SELEX
Cook et al.(2011)
782_8497264 		0.774
ELAVL4
M315_0.6 		Homo sapiens Sequence logo not available UUUUUUUUUWAAA RIP-chip
Cook et al.(2011)
619_19846595.2 		0.741
ELAVL4
M314_0.6 		Homo sapiens Sequence logo not available KUUUGUUUKKUUU RIP-chip
Cook et al.(2011)
619_19846595.1 		0.741
ELAVL4
M313_0.6 		Homo sapiens Sequence logo not available CYCUCCYUCYCYC RIP-chip
Cook et al.(2011)
619_19846595 		0.741
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSSTOP00000006982 RRM 100 139
ENSSTOP00000006982 RRM 155 223
ENSSTOP00000006982 RRM 306 371

Links

Other RRM family RBPs
Other Spermophilus tridecemlineatus RBPs

111 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
AAA96942 Xenopus laevis AAA96942 I 0.000
AAA96943 Xenopus laevis AAA96943 I 0.765
AAA96944 Xenopus laevis AAA96944 I 0.703
AAA96945 Xenopus laevis AAA96945 I 0.732
AAH86269 Xenopus laevis AAH86269 I 0.000
AAH94189 Xenopus laevis AAH94189 I 0.765
AAH99348 Xenopus laevis AAH99348 I 0.732
AAI16460 Xenopus laevis AAI16460 I 0.000
AAI69769 Xenopus laevis AAI69769 I 0.703
AAI70539 Xenopus laevis AAI70539 I 0.765
amel4_ncbi_hmm5219 Apis mellifera amel4_ncbi_hmm5219 I 0.000
Ame_R004766 Ailuropoda melanoleuca Ame_R004766 I 0.770
Ame_R009570 Ailuropoda melanoleuca Ame_R009570 I 0.711
Ame_R009760 Ailuropoda melanoleuca Ame_R009760 I 0.737
Ame_R010167 Ailuropoda melanoleuca Ame_R010167 I 0.000
CAA59430 Xenopus laevis CAA59430 I 0.761
CBF67567 Xenopus laevis CBF67567 I 0.732
CBU92440 Xenopus laevis CBU92440 I 0.732
ELAVL4 Anolis carolinensis ENSACAG00000004527 I 0.737
ELAVL3 Anolis carolinensis ENSACAG00000016958 I 0.000
ELAVL2 Anolis carolinensis ENSACAG00000017521 I 0.765
Q3ZCE2_BOVIN Bos taurus ENSBTAG00000000613 I 0.000
ELAVL3 Bos taurus ENSBTAG00000014412 I 0.711
A2VDK5_BOVIN Bos taurus ENSBTAG00000021046 I 0.737
ELAVL2 Canis familiaris ENSCAFG00000001688 I 0.770
ELAVL4 Canis familiaris ENSCAFG00000003927 I 0.737
ELAVL3 Canis familiaris ENSCAFG00000017350 I 0.711
ENSCAFG00000018353 Canis familiaris ENSCAFG00000018353 I 0.000
ELAVL4 Choloepus hoffmanni ENSCHOG00000002464 I 0.737
ENSCHOG00000006810 Choloepus hoffmanni ENSCHOG00000006810 I 0.733
ELAVL2 Callithrix jacchus ENSCJAG00000008064 I 0.770
ELAVL4 Callithrix jacchus ENSCJAG00000013725 I 0.737
ELAVL1 Callithrix jacchus ENSCJAG00000031727 I 0.000
ENSCPOG00000002044 Cavia porcellus ENSCPOG00000002044 I 0.737
ELAVL2 Cavia porcellus ENSCPOG00000010472 I 0.770
ELAVL1 Cavia porcellus ENSCPOG00000011884 I 0.733
elavl3 Danio rerio ENSDARG00000014420 I 0.711
hug Danio rerio ENSDARG00000016405 I 0.000
elavl1 Danio rerio ENSDARG00000038695 I 0.000
elavl2 Danio rerio ENSDARG00000040732 I 0.728
elavl4 Danio rerio ENSDARG00000045639 I 0.730
ELAVL4 Dasypus novemcinctus ENSDNOG00000002932 I 0.737
ELAVL1 Dasypus novemcinctus ENSDNOG00000008797 I 0.000
Elavl3 Dipodomys ordii ENSDORG00000002538 I 0.701
Elavl1 Dipodomys ordii ENSDORG00000009158 I 0.000
Elavl2 Dipodomys ordii ENSDORG00000010437 I 0.770
Elavl4 Dipodomys ordii ENSDORG00000012729 I 0.737
LOC100060819 Equus caballus ENSECAG00000019459 I 0.000
ELAVL2 Equus caballus ENSECAG00000020142 I 0.770
LOC100051268 Equus caballus ENSECAG00000022284 I 0.737
ELAVL4 Erinaceus europaeus ENSEEUG00000008766 I 0.737
ELAVL2 Echinops telfairi ENSETEG00000006134 I 0.770
ELAVL1 Echinops telfairi ENSETEG00000012985 I 0.733
ELAVL1 Felis catus ENSFCAG00000014947 I 0.000
ELAVL1 Homo sapiens ENSG00000066044 D 0.000
ELAVL2 Homo sapiens ENSG00000107105 D 0.770
ELAVL4 Homo sapiens ENSG00000162374 D 0.737
ELAVL3 Homo sapiens ENSG00000196361 I 0.711
ELAVL1 Gasterosteus aculeatus ENSGACG00000010657 I 0.000
ELAVL4 Gasterosteus aculeatus ENSGACG00000011152 I 0.732
ELAVL1 Gasterosteus aculeatus ENSGACG00000013329 I 0.000
ELAVL3 Gasterosteus aculeatus ENSGACG00000013839 I 0.711
ELAVL2 Gasterosteus aculeatus ENSGACG00000019484 I 0.742
Q9PW24_CHICK Gallus gallus ENSGALG00000000726 I 0.000
Q9PW22_CHICK Gallus gallus ENSGALG00000010533 I 0.737
ELAVL2 Gallus gallus ENSGALG00000015799 I 0.746
ELAVL4 Gorilla gorilla ENSGGOG00000000634 I 0.737
ELAVL2 Gorilla gorilla ENSGGOG00000003678 I 0.770
ELAVL1 Gorilla gorilla ENSGGOG00000006100 I 0.000
ELAVL3 Gorilla gorilla ENSGGOG00000008635 I 0.711
ELAVL4 Loxodonta africana ENSLAFG00000001087 I 0.737
ELAVL1 Loxodonta africana ENSLAFG00000004219 I 0.000
ELAVL3 Loxodonta africana ENSLAFG00000005013 I 0.711
ELAVL2 Loxodonta africana ENSLAFG00000009938 I 0.770
ELAVL4 Macropus eugenii ENSMEUG00000007145 I 0.737
ELAVL1 Macropus eugenii ENSMEUG00000010702 I 0.000
ELAVL3 Macropus eugenii ENSMEUG00000016706 I 0.703
ELAVL1 Meleagris gallopavo ENSMGAG00000001015 I 0.000
ELAVL4 Meleagris gallopavo ENSMGAG00000010928 I 0.737
ELAVL4 Microcebus murinus ENSMICG00000003286 I 0.737
ELAVL1 Microcebus murinus ENSMICG00000009699 I 0.000
ELAVL4 Myotis lucifugus ENSMLUG00000006226 I 0.737
ELAVL1 Myotis lucifugus ENSMLUG00000008101 I 0.000
ELAVL2 Myotis lucifugus ENSMLUG00000014210 I 0.765
ELAVL1 Macaca mulatta ENSMMUG00000006544 I 0.000
LOC708195 Macaca mulatta ENSMMUG00000010038 I 0.770
ELAVL4 Macaca mulatta ENSMMUG00000021933 I 0.737
ELAVL4 Monodelphis domestica ENSMODG00000001300 I 0.849
LOC100015949 Monodelphis domestica ENSMODG00000003936 I 0.765
ELAVL1 Monodelphis domestica ENSMODG00000005041 I 0.000
ELAVL3 Monodelphis domestica ENSMODG00000006653 I 0.000
Elavl3 Mus musculus ENSMUSG00000003410 I 0.701
Elavl2 Mus musculus ENSMUSG00000008489 I 0.770
Elavl4 Mus musculus ENSMUSG00000028546 I 0.737
Elavl1 Mus musculus ENSMUSG00000040028 I 0.000
ELAVL2 Ornithorhynchus anatinus ENSOANG00000009634 I 0.000
ELAVL2 Oryctolagus cuniculus ENSOCUG00000005891 I 0.770
D7R608_RABIT Oryctolagus cuniculus ENSOCUG00000015871 I 0.000
ELAVL4 Oryctolagus cuniculus ENSOCUG00000016262 I 0.737
ELAVL3 Otolemur garnettii ENSOGAG00000007072 I 0.711
ELAVL1 Otolemur garnettii ENSOGAG00000012877 I 0.000
ELAVL4 Otolemur garnettii ENSOGAG00000016990 I 0.737
ELAVL1 Ochotona princeps ENSOPRG00000009691 I 0.000
ELAVL2 Ochotona princeps ENSOPRG00000012874 I 0.770
ELAVL4 Ochotona princeps ENSOPRG00000015300 I 0.737
ELAVL1 Oryzias latipes ENSORLG00000000087 I 0.000
ELAVL2 Oryzias latipes ENSORLG00000004217 I 0.750
ELAVL3 Oryzias latipes ENSORLG00000005379 I 0.704
ELAVL1 Oryzias latipes ENSORLG00000012435 I 0.000
ELAVL4 Oryzias latipes ENSORLG00000017130 I 0.732
ELAVL4 Procavia capensis ENSPCAG00000008215 I 0.737
ELAVL2 Procavia capensis ENSPCAG00000014998 I 0.725
ELAVL1 Procavia capensis ENSPCAG00000016012 I 0.733
ENSPPYG00000001367 Pongo pygmaeus ENSPPYG00000001367 I 0.737
ENSPPYG00000009496 Pongo pygmaeus ENSPPYG00000009496 I 0.000
ENSPPYG00000019166 Pongo pygmaeus ENSPPYG00000019166 I 0.770
ELAVL4 Pan troglodytes ENSPTRG00000000723 I 0.737
ELAVL1 Pan troglodytes ENSPTRG00000010413 I 0.000
ELAVL3 Pan troglodytes ENSPTRG00000010506 I 0.000
ELAVL2 Pan troglodytes ENSPTRG00000020830 I 0.770
ELAVL1 Pteropus vampyrus ENSPVAG00000002299 I 0.000
ELAVL2 Pteropus vampyrus ENSPVAG00000002688 I 0.770
ELAVL4 Pteropus vampyrus ENSPVAG00000003632 I 0.000
ELAVL3 Pteropus vampyrus ENSPVAG00000014893 I 0.711
Elavl1 Rattus norvegicus ENSRNOG00000001069 I 0.000
Elavl2 Rattus norvegicus ENSRNOG00000006853 I 0.770
D3ZE54_RAT Rattus norvegicus ENSRNOG00000008657 I 0.000
Elavl3 Rattus norvegicus ENSRNOG00000013752 I 0.701
Elavl4 Rattus norvegicus ENSRNOG00000023601 I 0.737
ELAVL2 Sorex araneus ENSSARG00000005702 I 0.770
ELAVL4 Sorex araneus ENSSARG00000010733 I 0.737
ELAVL1 Sorex araneus ENSSARG00000013091 I 0.000
ELAVL2 Sus scrofa ENSSSCG00000005130 I 0.770
ELAVL1 Sus scrofa ENSSSCG00000013592 I 0.000
ELAVL3 Sus scrofa ENSSSCG00000013617 I 0.711
ELAVL1 Spermophilus tridecemlineatus ENSSTOG00000009130 I 0.000
ELAVL1 Taeniopygia guttata ENSTGUG00000000118 I 0.000
ELAVL2 Taeniopygia guttata ENSTGUG00000001349 I 0.732
ELAVL4 Taeniopygia guttata ENSTGUG00000008597 I 0.737
ELAVL1 Tetraodon nigroviridis ENSTNIG00000004733 I 0.000
ELAVL2 Tetraodon nigroviridis ENSTNIG00000011312 I 0.742
ELAVL4 Tetraodon nigroviridis ENSTNIG00000015485 I 0.728
ELAVL3 Tetraodon nigroviridis ENSTNIG00000018572 I 0.701
ELAVL1 Tetraodon nigroviridis ENSTNIG00000019823 I 0.000
ELAVL4 Takifugu rubripes ENSTRUG00000000523 I 0.825
ELAVL1 Takifugu rubripes ENSTRUG00000004559 I 0.000
ELAVL1 Takifugu rubripes ENSTRUG00000007296 I 0.000
ELAVL2 Takifugu rubripes ENSTRUG00000007867 I 0.754
ELAVL3 Takifugu rubripes ENSTRUG00000010719 I 0.711
ELAVL4 Tarsius syrichta ENSTSYG00000004130 I 0.737
ELAVL1 Tarsius syrichta ENSTSYG00000008248 I 0.000
ELAVL2 Tarsius syrichta ENSTSYG00000013066 I 0.749
ELAVL3 Tursiops truncatus ENSTTRG00000001789 I 0.711
ELAVL1 Tursiops truncatus ENSTTRG00000010180 I 0.000
ELAVL2 Tursiops truncatus ENSTTRG00000011656 I 0.765
ELAVL2 Vicugna pacos ENSVPAG00000005109 I 0.770
ELAVL4 Vicugna pacos ENSVPAG00000011606 I 0.737
elavl4 Xenopus tropicalis ENSXETG00000008680 I 0.732
elavl1 Xenopus tropicalis ENSXETG00000008752 I 0.000
elavl3 Xenopus tropicalis ENSXETG00000016741 I 0.000
Rbp9 Drosophila melanogaster FBgn0010263 D 0.000
GH13638 Drosophila grimshawi FBgn0121114 I 0.000
fgenesh2_pg.C_sca_14000012 Lottia gigantea fgenesh2_pg.C_sca_14000012 I 0.000
fgenesh2_pg.scaffold_219000066 Branchiostoma floridae fgenesh2_pg.scaffold_219000066 I 0.000
nasonia_NCBI_hmm330804 Nasonia vitripennis nasonia_NCBI_hmm330804 I 0.000
Q1JQ73 Xenopus laevis Q1JQ73 I 0.000
Q5U259 Xenopus laevis Q5U259 I 0.000
Q91584 Xenopus laevis Q91584 I 0.703
Q91903 Xenopus laevis Q91903 I 0.765