B52 (Drosophila melanogaster)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 FBgn0004587 T42996_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
B52
M334_0.6		 Drosophila melanogaster GRUCAACCNGGCGACMG SELEX
Cook et al.(2011)
802_9111335 		(Direct)
B52
M126_0.6		 Drosophila melanogaster GGASGRV RNAcompete
Ray et al.(2013)
RNCMPT00134 		(Direct)

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

Experimental Constructs

Motif ID Domain From To Sequence
M126_0.6 RRM 6 68
M126_0.6 RRM 122 187

RNA Binding Domains

Protein ID Domain From To Sequence
FBpp0082269 RRM 6 68
FBpp0082269 RRM 117 182
FBpp0082270 RRM 6 68
FBpp0082270 RRM 122 187
FBpp0082271 RRM 6 68
FBpp0082272 RRM 6 68
FBpp0082274 RRM 6 68
FBpp0082274 RRM 117 182
FBpp0289813 RRM 6 68
FBpp0289815 RRM 6 68
FBpp0289816 RRM 6 68
FBpp0300515 RRM 6 68
FBpp0300515 RRM 122 187
FBpp0300516 RRM 6 68
FBpp0300516 RRM 117 182
FBpp0300517 RRM 6 68
FBpp0300517 RRM 122 187

Links

Other RRM family RBPs
Other Drosophila melanogaster RBPs

140 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
62194 Helobdella robusta 62194 I 0.721
AAEL012621 Aedes aegypti AAEL012621 I 0.829
AAH44085 Xenopus laevis AAH44085 I 0.705
AAH44265 Xenopus laevis AAH44265 I 0.744
AAH46668 Xenopus laevis AAH46668 I 0.767
AAH71160 Xenopus laevis AAH71160 I 0.721
AGAP004592 Anopheles gambiae AGAP004592 I 1.000
amel4_ncbi_hmm6583 Apis mellifera amel4_ncbi_hmm6583 I 0.891
Ame_R004936 Ailuropoda melanoleuca Ame_R004936 I 0.729
Ame_R018370 Ailuropoda melanoleuca Ame_R018370 I 0.767
BGIBMGA010178 Bombyx mori BGIBMGA010178 I 0.899
CPIJ008634 Culex quinquefasciatus CPIJ008634 I 0.969
CpipJ_CPIJ008634 Culex pipiens CpipJ_CPIJ008634 I 0.969
DGIL_AUG5s17730g6t1 Acyrtosiphon pisum DGIL_AUG5s17730g6t1 I 0.822
SRSF6 Anolis carolinensis ENSACAG00000002061 I 0.752
SRSF5 Anolis carolinensis ENSACAG00000005143 I 0.736
ENSACAG00000005544 Anolis carolinensis ENSACAG00000005544 I 0.752
SFRS6_BOVIN Bos taurus ENSBTAG00000008527 I 0.767
A6H7B7_BOVIN Bos taurus ENSBTAG00000011596 I 0.729
A7MB38_BOVIN Bos taurus ENSBTAG00000013309 I 0.767
SRSF5 Canis familiaris ENSCAFG00000016589 I 0.729
ENSCING00000004873 Ciona intestinalis ENSCING00000004873 I 0.713
ENSCING00000012370 Ciona intestinalis ENSCING00000012370 I 0.713
LOC100402973 Callithrix jacchus ENSCJAG00000009971 I 0.767
A6MLI3_CALJA Callithrix jacchus ENSCJAG00000014884 I 0.729
SRSF6 Callithrix jacchus ENSCJAG00000017888 I 0.760
SRSF5 Cavia porcellus ENSCPOG00000005949 I 0.729
SRSF4 Cavia porcellus ENSCPOG00000007263 I 0.767
SRSF6 Cavia porcellus ENSCPOG00000011761 I 0.721
ENSCSAVG00000002581 Ciona savignyi ENSCSAVG00000002581 I 0.729
srsf6a Danio rerio ENSDARG00000013729 I 0.744
srsf6b Danio rerio ENSDARG00000016783 I 0.744
srsf5b Danio rerio ENSDARG00000027734 I 0.705
srsf5a Danio rerio ENSDARG00000029818 I 0.721
SRSF4 Dasypus novemcinctus ENSDNOG00000000968 I 0.767
SRSF6 Dasypus novemcinctus ENSDNOG00000008410 I 0.760
Srsf6 Dipodomys ordii ENSDORG00000001945 I 0.760
Srsf4 Dipodomys ordii ENSDORG00000002459 I 0.767
LOC100053264 Equus caballus ENSECAG00000026873 I 0.729
SRSF4 Erinaceus europaeus ENSEEUG00000008479 I 0.767
SRSF6 Echinops telfairi ENSETEG00000006221 I 0.744
SRSF5 Echinops telfairi ENSETEG00000020396 I 0.721
SRSF5 Felis catus ENSFCAG00000008848 I 0.729
SRSF5 Homo sapiens ENSG00000100650 D 0.729
SRSF4 Homo sapiens ENSG00000116350 I 0.767
SRSF6 Homo sapiens ENSG00000124193 I 0.760
SRSF4 Gasterosteus aculeatus ENSGACG00000002389 I 0.752
SRSF6 Gasterosteus aculeatus ENSGACG00000006084 I 0.752
ENSGACG00000011761 Gasterosteus aculeatus ENSGACG00000011761 I 0.713
Q5ZLF9_CHICK Gallus gallus ENSGALG00000009421 I 0.713
Q5ZKT4_CHICK Gallus gallus ENSGALG00000009484 I 0.752
SRSF6 Gorilla gorilla ENSGGOG00000009808 I 0.760
SRSF5 Gorilla gorilla ENSGGOG00000016462 I 0.729
SRSF4 Loxodonta africana ENSLAFG00000002575 I 0.767
SRSF5 Loxodonta africana ENSLAFG00000005260 I 0.721
SRSF6 Macropus eugenii ENSMEUG00000014615 I 0.752
SRSF4 Meleagris gallopavo ENSMGAG00000002400 I 0.767
ENSMGAG00000011888 Meleagris gallopavo ENSMGAG00000011888 I 0.752
SRSF6 Microcebus murinus ENSMICG00000008537 I 0.752
SRSF5 Myotis lucifugus ENSMLUG00000011939 I 0.729
SRSF4 Myotis lucifugus ENSMLUG00000014770 I 0.736
SRSF4 Macaca mulatta ENSMMUG00000007110 I 0.767
SRSF5 Macaca mulatta ENSMMUG00000022407 I 0.729
SRSF6 Monodelphis domestica ENSMODG00000003107 I 0.752
SRSF4 Monodelphis domestica ENSMODG00000011052 I 0.767
SRSF5 Monodelphis domestica ENSMODG00000011362 I 0.736
Srsf6 Mus musculus ENSMUSG00000016921 I 0.760
Srsf5 Mus musculus ENSMUSG00000021134 I 0.729
Srsf4 Mus musculus ENSMUSG00000028911 I 0.767
SRSF5 Ornithorhynchus anatinus ENSOANG00000013336 I 0.721
SRSF4 Oryctolagus cuniculus ENSOCUG00000001837 I 0.767
SRSF5 Oryctolagus cuniculus ENSOCUG00000009274 I 0.729
SRSF5 Otolemur garnettii ENSOGAG00000015122 I 0.729
SRSF5 Ochotona princeps ENSOPRG00000008286 I 0.729
SRSF4 Ochotona princeps ENSOPRG00000010098 I 0.760
SRSF6 Oryzias latipes ENSORLG00000003530 I 0.736
SRSF5 Oryzias latipes ENSORLG00000009268 I 0.729
SRSF4 Oryzias latipes ENSORLG00000009430 I 0.752
SRSF4 Procavia capensis ENSPCAG00000009879 I 0.767
SRSF6 Procavia capensis ENSPCAG00000010954 I 0.752
ENSPPYG00000001629 Pongo pygmaeus ENSPPYG00000001629 I 0.767
ENSPPYG00000005945 Pongo pygmaeus ENSPPYG00000005945 I 0.729
ENSPPYG00000011019 Pongo pygmaeus ENSPPYG00000011019 I 0.760
SRSF4 Pan troglodytes ENSPTRG00000000445 I 0.767
SRSF5 Pan troglodytes ENSPTRG00000006488 I 0.729
SRSF6 Pteropus vampyrus ENSPVAG00000015232 I 0.760
Sfrs5 Rattus norvegicus ENSRNOG00000005513 I 0.729
Sfrs6 Rattus norvegicus ENSRNOG00000006380 I 0.760
Sfrs4 Rattus norvegicus ENSRNOG00000010007 I 0.767
SRSF5 Sus scrofa ENSSSCG00000002312 I 0.729
SRSF4 Sus scrofa ENSSSCG00000003588 I 0.767
SFRS6 Taeniopygia guttata ENSTGUG00000003455 I 0.752
SFRS5 Taeniopygia guttata ENSTGUG00000011425 I 0.736
XP_002200515.1 Taeniopygia guttata ENSTGUG00000011492 I 0.760
SRSF4 Tetraodon nigroviridis ENSTNIG00000000115 I 0.744
SRSF6 Tetraodon nigroviridis ENSTNIG00000001692 I 0.736
SRSF4 Tetraodon nigroviridis ENSTNIG00000005573 I 0.744
SRSF5 Tetraodon nigroviridis ENSTNIG00000016411 I 0.705
SRSF6 Takifugu rubripes ENSTRUG00000003244 I 0.744
PACS2 Takifugu rubripes ENSTRUG00000010740 I 0.721
SRSF4 Takifugu rubripes ENSTRUG00000011891 I 0.744
SRSF5 Takifugu rubripes ENSTRUG00000017811 I 0.705
SRSF5 Tarsius syrichta ENSTSYG00000007786 I 0.729
SRSF4 Tarsius syrichta ENSTSYG00000007903 I 0.760
SRSF4 Tursiops truncatus ENSTTRG00000002572 I 0.767
SRSF5 Tursiops truncatus ENSTTRG00000003318 I 0.729
SRSF5 Vicugna pacos ENSVPAG00000006448 I 0.729
srsf5 Xenopus tropicalis ENSXETG00000002211 I 0.729
srsf4 Xenopus tropicalis ENSXETG00000014380 I 0.705
XB-GENE-5954653 Xenopus tropicalis ENSXETG00000017937 I 0.713
srsf6 Xenopus tropicalis ENSXETG00000025503 I 0.760
estExt_fgenesh1_pg.C_3000025 Capitella teleta estExt_fgenesh1_pg.C_3000025 I 0.798
estExt_fgenesh2_pg.C_920027 Branchiostoma floridae estExt_fgenesh2_pg.C_920027 I 0.744
estExt_fgenesh2_pm.C_690014 Branchiostoma floridae estExt_fgenesh2_pm.C_690014 I 0.760
estExt_Genewise1Plus.C_150169 Daphnia pulex estExt_Genewise1Plus.C_150169 I 0.860
estExt_Genewise1Plus.C_1640045 Capitella teleta estExt_Genewise1Plus.C_1640045 I 0.822
estExt_Genewise1Plus.C_sca_890186 Lottia gigantea estExt_Genewise1Plus.C_sca_890186 I 0.744
e_gw1.89.27.1 Lottia gigantea e_gw1.89.27.1 I 0.760
GA10599-RA Drosophila pseudoobscura FBgn0070656 I 0.992
GF17608 Drosophila ananassae FBgn0094626 I 1.000
GG19772 Drosophila erecta FBgn0111973 N 1.000
GH18528 Drosophila grimshawi FBgn0125995 I 0.992
GI22065 Drosophila mojavensis FBgn0144794 I 0.992
GL23543 Drosophila persimilis FBgn0161133 I 0.992
GM24118 Drosophila sechellia FBgn0178982 N 1.000
GD18917 Drosophila simulans FBgn0190428 N 1.000
GJ24113 Drosophila virilis FBgn0211197 I 0.992
GK13948 Drosophila willistoni FBgn0215954 I 1.000
GE26284 Drosophila yakuba FBgn0243315 N 1.000
fgenesh1_pm.scaffold_318000001 Nematostella vectensis fgenesh1_pm.scaffold_318000001 N 0.705
ISCW002531 Ixodes scapularis ISCW002531 I 0.736
ISCW010321 Ixodes scapularis ISCW010321 I 0.806
ISCW010322 Ixodes scapularis ISCW010322 I 0.760
ISCW014220 Ixodes scapularis ISCW014220 I 0.744
nasonia_NCBI_hmm368623 Nasonia vitripennis nasonia_NCBI_hmm368623 I 0.822
nasonia_NCBI_hmm370623 Nasonia vitripennis nasonia_NCBI_hmm370623 I 0.822
PHUM290500 Pediculus humanus PHUM290500 I 0.860
XP_001180940.1 Strongylocentrotus purpuratus XP_001180940.1 I 0.791
XP_798746.1 Strongylocentrotus purpuratus XP_798746.1 I 0.791