CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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B52
(
Drosophila melanogaster
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
FBgn0004587
T42996_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
B52
M334_0.6
Drosophila melanogaster
GRUCAACCNGGCGACMG
SELEX
Cook et al.(2011)
802_9111335
(Direct)
B52
M126_0.6
Drosophila melanogaster
GGASGRV
RNAcompete
Ray et al.(2013)
RNCMPT00134
(Direct)
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
Experimental Constructs
Motif ID
Domain
From
To
Sequence
M126_0.6
RRM
6
68
VYVGGLPYGVRERDLERFFKGYGRTRDILIKNGYGFVEFEDYRDADDAVYELNGKELLGERVV
M126_0.6
RRM
122
187
LIVENLSSRVSWQDLKDYMRQAGEVTYADAHKQRRNEGVVEFASLSDMKTAIEKLDDTELNGRRIH
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
FBpp0082269
RRM
6
68
VYVGGLPYGVRERDLERFFKGYGRTRDILIKNGYGFVEFEDYRDADDAVYELNGKELLGERVV
FBpp0082269
RRM
117
182
LIVENLSSRVSWQDLKDYMRQAGEVTYADAHKQRRNEGVVEFASLSDMKTAIEKLDDTELNGRRIH
FBpp0082270
RRM
6
68
VYVGGLPYGVRERDLERFFKGYGRTRDILIKNGYGFVEFEDYRDADDAVYELNGKELLGERVV
FBpp0082270
RRM
122
187
LIVENLSSRVSWQDLKDYMRQAGEVTYADAHKQRRNEGVVEFASLSDMKTAIEKLDDTELNGRRIH
FBpp0082271
RRM
6
68
VYVGGLPYGVRERDLERFFKGYGRTRDILIKNGYGFVEFEDYRDADDAVYELNGKELLGERVV
FBpp0082272
RRM
6
68
VYVGGLPYGVRERDLERFFKGYGRTRDILIKNGYGFVEFEDYRDADDAVYELNGKELLGERVV
FBpp0082274
RRM
6
68
VYVGGLPYGVRERDLERFFKGYGRTRDILIKNGYGFVEFEDYRDADDAVYELNGKELLGERVV
FBpp0082274
RRM
117
182
LIVENLSSRVSWQDLKDYMRQAGEVTYADAHKQRRNEGVVEFASLSDMKTAIEKLDDTELNGRRIH
FBpp0289813
RRM
6
68
VYVGGLPYGVRERDLERFFKGYGRTRDILIKNGYGFVEFEDYRDADDAVYELNGKELLGERVV
FBpp0289815
RRM
6
68
VYVGGLPYGVRERDLERFFKGYGRTRDILIKNGYGFVEFEDYRDADDAVYELNGKELLGERVV
FBpp0289816
RRM
6
68
VYVGGLPYGVRERDLERFFKGYGRTRDILIKNGYGFVEFEDYRDADDAVYELNGKELLGERVV
FBpp0300515
RRM
6
68
VYVGGLPYGVRERDLERFFKGYGRTRDILIKNGYGFVEFEDYRDADDAVYELNGKELLGERVV
FBpp0300515
RRM
122
187
LIVENLSSRVSWQDLKDYMRQAGEVTYADAHKQRRNEGVVEFASLSDMKTAIEKLDDTELNGRRIH
FBpp0300516
RRM
6
68
VYVGGLPYGVRERDLERFFKGYGRTRDILIKNGYGFVEFEDYRDADDAVYELNGKELLGERVV
FBpp0300516
RRM
117
182
LIVENLSSRVSWQDLKDYMRQAGEVTYADAHKQRRNEGVVEFASLSDMKTAIEKLDDTELNGRRIH
FBpp0300517
RRM
6
68
VYVGGLPYGVRERDLERFFKGYGRTRDILIKNGYGFVEFEDYRDADDAVYELNGKELLGERVV
FBpp0300517
RRM
122
187
LIVENLSSRVSWQDLKDYMRQAGEVTYADAHKQRRNEGVVEFASLSDMKTAIEKLDDTELNGRRIH
Links
Other
RRM
family RBPs
Other
Drosophila melanogaster
RBPs
140 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
AAEL005541
Aedes aegypti
AAEL005541
N
0.000
AAEL005690
Aedes aegypti
AAEL005690
N
0.000
AGAP008136
Anopheles gambiae
AGAP008136
N
0.000
amel4_ncbi_hmm11961
Apis mellifera
amel4_ncbi_hmm11961
N
0.000
amel4_ncbi_hmm35613
Apis mellifera
amel4_ncbi_hmm35613
N
0.000
Ame_R008665
Ailuropoda melanoleuca
Ame_R008665
N
0.000
BGIBMGA008977
Bombyx mori
BGIBMGA008977
N
0.000
CPIJ000912
Culex quinquefasciatus
CPIJ000912
N
0.000
CpipJ_CPIJ000912
Culex pipiens
CpipJ_CPIJ000912
N
0.000
PPIL4
Anolis carolinensis
ENSACAG00000006936
N
0.000
A6QP53_BOVIN
Bos taurus
ENSBTAG00000016980
N
0.000
Q6JDI1_CANFA
Canis familiaris
ENSCAFG00000000379
N
0.000
ENSCING00000006773
Ciona intestinalis
ENSCING00000006773
I
0.000
PPIL4
Cavia porcellus
ENSCPOG00000014614
N
0.000
ENSCSAVG00000010619
Ciona savignyi
ENSCSAVG00000010619
N
0.000
ppil4
Danio rerio
ENSDARG00000043854
N
0.000
PPIL4
Equus caballus
ENSECAG00000021819
N
0.000
PPIL4
Erinaceus europaeus
ENSEEUG00000000959
N
0.000
PPIL4
Homo sapiens
ENSG00000131013
N
0.000
PPIL4
Gasterosteus aculeatus
ENSGACG00000006639
N
0.000
PPIL4
Gallus gallus
ENSGALG00000012364
N
0.000
PPIL4
Gorilla gorilla
ENSGGOG00000009686
N
0.000
PPIL4
Loxodonta africana
ENSLAFG00000026804
N
0.000
PPIL4
Meleagris gallopavo
ENSMGAG00000012596
N
0.000
PPIL4
Microcebus murinus
ENSMICG00000006287
N
0.000
PPIL4
Myotis lucifugus
ENSMLUG00000002766
N
0.000
PPIL4
Macaca mulatta
ENSMMUG00000023067
N
0.000
PPIL4
Monodelphis domestica
ENSMODG00000016825
N
0.000
Ppil4
Mus musculus
ENSMUSG00000015757
N
0.000
ENSOANG00000001063
Ornithorhynchus anatinus
ENSOANG00000001063
N
0.000
PPIL4
Oryctolagus cuniculus
ENSOCUG00000007696
N
0.000
PPIL4
Otolemur garnettii
ENSOGAG00000014153
N
0.000
PPIL4
Ochotona princeps
ENSOPRG00000005619
N
0.000
PPIL4
Oryzias latipes
ENSORLG00000015310
N
0.000
PPIL4
Procavia capensis
ENSPCAG00000008203
N
0.000
PPIL4
Pan troglodytes
ENSPTRG00000018692
N
0.000
PPIL4
Pteropus vampyrus
ENSPVAG00000000746
N
0.000
Ppil4
Rattus norvegicus
ENSRNOG00000015552
N
0.000
PPIL4
Sorex araneus
ENSSARG00000011244
N
0.000
PPIL4
Taeniopygia guttata
ENSTGUG00000010655
N
0.000
PPIL4
Tetraodon nigroviridis
ENSTNIG00000002706
N
0.000
PPIL4
Takifugu rubripes
ENSTRUG00000006670
N
0.000
PPIL4
Tursiops truncatus
ENSTTRG00000006014
N
0.000
PPIL4
Vicugna pacos
ENSVPAG00000005157
N
0.000
ppil4
Xenopus tropicalis
ENSXETG00000021385
N
0.000
estExt_fgenesh2_pm.C_1170007
Branchiostoma floridae
estExt_fgenesh2_pm.C_1170007
N
0.000
estExt_Genewise1Plus.C_11662
Tremella mesenterica
estExt_Genewise1Plus.C_11662
N
0.000
estExt_Genewise1Plus.C_12820
Neurospora discreta
estExt_Genewise1Plus.C_12820
N
0.000
estExt_Genewise1Plus.C_40585
Mucor circinelloides
estExt_Genewise1Plus.C_40585
N
0.000
EuGene.1200010297
Ostreococcus RCC809
EuGene.1200010297
N
0.000
e_gw.42.57.1
Nematostella vectensis
e_gw.42.57.1
N
0.000
e_gw1.6.1078.1
Selaginella moellendorfii
e_gw1.6.1078.1
N
0.000
CG5808
Drosophila melanogaster
FBgn0027617
N
0.000
GF18772
Drosophila ananassae
FBgn0095789
N
0.000
GG12319
Drosophila erecta
FBgn0104609
N
0.000
GH18460
Drosophila grimshawi
FBgn0125927
N
0.000
GI24038
Drosophila mojavensis
FBgn0146761
N
0.000
GL13859
Drosophila persimilis
FBgn0151464
N
0.000
GM23461
Drosophila sechellia
FBgn0178328
N
0.000
GD18267
Drosophila simulans
FBgn0189800
N
0.000
GJ23668
Drosophila virilis
FBgn0210765
N
0.000
GK13166
Drosophila willistoni
FBgn0215175
N
0.000
GE10772
Drosophila yakuba
FBgn0228614
N
0.000
GA26948-RA
Drosophila pseudoobscura
FBgn0248319
N
0.000
FOXG_13736
Fusarium oxysporum
FOXG_13736
N
0.000
FVEG_11166
Fusarium verticillioides
FVEG_11166
N
0.000
gw1.1.256.1
Neurospora tetrasperma
gw1.1.256.1
N
0.000
gw1.12.00.150.1
Ostreococcus tauri
gw1.12.00.150.1
N
0.000
gwEuk.12.143.1
Ostreococcus lucimarinus
gwEuk.12.143.1
N
0.000
LOAG_08216
Loa loa
LOAG_08216
N
0.000
nasonia_NCBI_hmm783174
Nasonia vitripennis
nasonia_NCBI_hmm783174
N
0.000
NCU10166
Neurospora crassa
NCU10166
N
0.000
Pa_2_13850
Podospora anserina
Pa_2_13850
N
0.000
RO3G_06974
Rhizopus oryzae
RO3G_06974
N
0.000
SJAG_00470
Schizosaccharomyces japonicus
SJAG_00470
N
0.000
SPPG_03169
Spizellomyces punctatus
SPPG_03169
N
0.000
WUBG_04730
Wuchereria bancrofti
WUBG_04730
N
0.000