B52 (Drosophila melanogaster)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 FBgn0004587 T42996_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
B52
M334_0.6		 Drosophila melanogaster GRUCAACCNGGCGACMG SELEX
Cook et al.(2011)
802_9111335 		(Direct)
B52
M126_0.6		 Drosophila melanogaster GGASGRV RNAcompete
Ray et al.(2013)
RNCMPT00134 		(Direct)

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

Experimental Constructs

Motif ID Domain From To Sequence
M126_0.6 RRM 6 68
M126_0.6 RRM 122 187

RNA Binding Domains

Protein ID Domain From To Sequence
FBpp0082269 RRM 6 68
FBpp0082269 RRM 117 182
FBpp0082270 RRM 6 68
FBpp0082270 RRM 122 187
FBpp0082271 RRM 6 68
FBpp0082272 RRM 6 68
FBpp0082274 RRM 6 68
FBpp0082274 RRM 117 182
FBpp0289813 RRM 6 68
FBpp0289815 RRM 6 68
FBpp0289816 RRM 6 68
FBpp0300515 RRM 6 68
FBpp0300515 RRM 122 187
FBpp0300516 RRM 6 68
FBpp0300516 RRM 117 182
FBpp0300517 RRM 6 68
FBpp0300517 RRM 122 187

Links

Other RRM family RBPs
Other Drosophila melanogaster RBPs

140 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
AAEL005541 Aedes aegypti AAEL005541 N 0.000
AAEL005690 Aedes aegypti AAEL005690 N 0.000
AGAP008136 Anopheles gambiae AGAP008136 N 0.000
amel4_ncbi_hmm11961 Apis mellifera amel4_ncbi_hmm11961 N 0.000
amel4_ncbi_hmm35613 Apis mellifera amel4_ncbi_hmm35613 N 0.000
Ame_R008665 Ailuropoda melanoleuca Ame_R008665 N 0.000
BGIBMGA008977 Bombyx mori BGIBMGA008977 N 0.000
CPIJ000912 Culex quinquefasciatus CPIJ000912 N 0.000
CpipJ_CPIJ000912 Culex pipiens CpipJ_CPIJ000912 N 0.000
PPIL4 Anolis carolinensis ENSACAG00000006936 N 0.000
A6QP53_BOVIN Bos taurus ENSBTAG00000016980 N 0.000
Q6JDI1_CANFA Canis familiaris ENSCAFG00000000379 N 0.000
ENSCING00000006773 Ciona intestinalis ENSCING00000006773 I 0.000
PPIL4 Cavia porcellus ENSCPOG00000014614 N 0.000
ENSCSAVG00000010619 Ciona savignyi ENSCSAVG00000010619 N 0.000
ppil4 Danio rerio ENSDARG00000043854 N 0.000
PPIL4 Equus caballus ENSECAG00000021819 N 0.000
PPIL4 Erinaceus europaeus ENSEEUG00000000959 N 0.000
PPIL4 Homo sapiens ENSG00000131013 N 0.000
PPIL4 Gasterosteus aculeatus ENSGACG00000006639 N 0.000
PPIL4 Gallus gallus ENSGALG00000012364 N 0.000
PPIL4 Gorilla gorilla ENSGGOG00000009686 N 0.000
PPIL4 Loxodonta africana ENSLAFG00000026804 N 0.000
PPIL4 Meleagris gallopavo ENSMGAG00000012596 N 0.000
PPIL4 Microcebus murinus ENSMICG00000006287 N 0.000
PPIL4 Myotis lucifugus ENSMLUG00000002766 N 0.000
PPIL4 Macaca mulatta ENSMMUG00000023067 N 0.000
PPIL4 Monodelphis domestica ENSMODG00000016825 N 0.000
Ppil4 Mus musculus ENSMUSG00000015757 N 0.000
ENSOANG00000001063 Ornithorhynchus anatinus ENSOANG00000001063 N 0.000
PPIL4 Oryctolagus cuniculus ENSOCUG00000007696 N 0.000
PPIL4 Otolemur garnettii ENSOGAG00000014153 N 0.000
PPIL4 Ochotona princeps ENSOPRG00000005619 N 0.000
PPIL4 Oryzias latipes ENSORLG00000015310 N 0.000
PPIL4 Procavia capensis ENSPCAG00000008203 N 0.000
PPIL4 Pan troglodytes ENSPTRG00000018692 N 0.000
PPIL4 Pteropus vampyrus ENSPVAG00000000746 N 0.000
Ppil4 Rattus norvegicus ENSRNOG00000015552 N 0.000
PPIL4 Sorex araneus ENSSARG00000011244 N 0.000
PPIL4 Taeniopygia guttata ENSTGUG00000010655 N 0.000
PPIL4 Tetraodon nigroviridis ENSTNIG00000002706 N 0.000
PPIL4 Takifugu rubripes ENSTRUG00000006670 N 0.000
PPIL4 Tursiops truncatus ENSTTRG00000006014 N 0.000
PPIL4 Vicugna pacos ENSVPAG00000005157 N 0.000
ppil4 Xenopus tropicalis ENSXETG00000021385 N 0.000
estExt_fgenesh2_pm.C_1170007 Branchiostoma floridae estExt_fgenesh2_pm.C_1170007 N 0.000
estExt_Genewise1Plus.C_11662 Tremella mesenterica estExt_Genewise1Plus.C_11662 N 0.000
estExt_Genewise1Plus.C_12820 Neurospora discreta estExt_Genewise1Plus.C_12820 N 0.000
estExt_Genewise1Plus.C_40585 Mucor circinelloides estExt_Genewise1Plus.C_40585 N 0.000
EuGene.1200010297 Ostreococcus RCC809 EuGene.1200010297 N 0.000
e_gw.42.57.1 Nematostella vectensis e_gw.42.57.1 N 0.000
e_gw1.6.1078.1 Selaginella moellendorfii e_gw1.6.1078.1 N 0.000
CG5808 Drosophila melanogaster FBgn0027617 N 0.000
GF18772 Drosophila ananassae FBgn0095789 N 0.000
GG12319 Drosophila erecta FBgn0104609 N 0.000
GH18460 Drosophila grimshawi FBgn0125927 N 0.000
GI24038 Drosophila mojavensis FBgn0146761 N 0.000
GL13859 Drosophila persimilis FBgn0151464 N 0.000
GM23461 Drosophila sechellia FBgn0178328 N 0.000
GD18267 Drosophila simulans FBgn0189800 N 0.000
GJ23668 Drosophila virilis FBgn0210765 N 0.000
GK13166 Drosophila willistoni FBgn0215175 N 0.000
GE10772 Drosophila yakuba FBgn0228614 N 0.000
GA26948-RA Drosophila pseudoobscura FBgn0248319 N 0.000
FOXG_13736 Fusarium oxysporum FOXG_13736 N 0.000
FVEG_11166 Fusarium verticillioides FVEG_11166 N 0.000
gw1.1.256.1 Neurospora tetrasperma gw1.1.256.1 N 0.000
gw1.12.00.150.1 Ostreococcus tauri gw1.12.00.150.1 N 0.000
gwEuk.12.143.1 Ostreococcus lucimarinus gwEuk.12.143.1 N 0.000
LOAG_08216 Loa loa LOAG_08216 N 0.000
nasonia_NCBI_hmm783174 Nasonia vitripennis nasonia_NCBI_hmm783174 N 0.000
NCU10166 Neurospora crassa NCU10166 N 0.000
Pa_2_13850 Podospora anserina Pa_2_13850 N 0.000
RO3G_06974 Rhizopus oryzae RO3G_06974 N 0.000
SJAG_00470 Schizosaccharomyces japonicus SJAG_00470 N 0.000
SPPG_03169 Spizellomyces punctatus SPPG_03169 N 0.000
WUBG_04730 Wuchereria bancrofti WUBG_04730 N 0.000