29917.m002004 (Ricinus communis)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 29917.m002004 T48711_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
29917.m002004 RRM 1929 1997
29917.m002004 RRM 2017 2087

Links

Other RRM family RBPs
Other Ricinus communis RBPs

39 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
29629.m001425 Ricinus communis 29629.m001425 N 0.750
AT3G13224 Arabidopsis thaliana AT3G13224-TAIR-G N 0.729
AT5G40490 Arabidopsis thaliana AT5G40490-TAIR-G N 0.793
BRADI3G39090 Brachypodium distachyon BRADI3G39090 N 0.707
cassava12461.valid.m1 Manihot esculenta cassava12461.valid.m1 N 0.721
cassava24310.valid.m1 Manihot esculenta cassava24310.valid.m1 N 0.736
cassava7031.valid.m1 Manihot esculenta cassava7031.valid.m1 N 0.764
cassava897.valid.m1 Manihot esculenta cassava897.valid.m1 N 0.907
chr2.LjT32G18.130.nc Lotus japonicus chr2.LjT32G18.130.nc N 0.814
Cucsa.240780 Cucumis sativus Cucsa.240780 N 0.750
Cucsa.340040 Cucumis sativus Cucsa.340040 N 0.843
XM_002882764.1 Arabidopsis lyrata fgenesh2_kg.3__1405__AT3G13224.1 N 0.714
XM_002870653.1 Arabidopsis lyrata fgenesh2_kg.7__3369__AT5G40490.1 N 0.793
Glyma05g09040.1 Glycine max Glyma05g09040.1 N 0.829
Glyma13g11650.1 Glycine max Glyma13g11650.1 N 0.721
Glyma16g07660.1 Glycine max Glyma16g07660.1 N 0.836
Glyma19g00530.1 Glycine max Glyma19g00530.1 N 0.821
Glyma19g10300.1 Glycine max Glyma19g10300.1 N 0.836
GRMZM2G050218 Zea mays GRMZM2G050218 N 0.721
GSVIVG00012784001 Vitis vinifera GSVIVG00012784001 N 0.757
GSVIVG00014729001 Vitis vinifera GSVIVG00014729001 N 0.757
GSVIVG00030120001 Vitis vinifera GSVIVG00030120001 N 0.700
GSVIVG00032402001 Vitis vinifera GSVIVG00032402001 N 0.893
LjSGA_018192.1 Lotus japonicus LjSGA_018192.1 N 0.707
MDP0000191633 Malus x domestica MDP0000191633 N 0.729
MDP0000202850 Malus x domestica MDP0000202850 N 0.729
MDP0000220851 Malus x domestica MDP0000220851 N 0.721
MDP0000270712 Malus x domestica MDP0000270712 N 0.836
MDP0000303054 Malus x domestica MDP0000303054 N 0.836
MDP0000303178 Malus x domestica MDP0000303178 N 0.757
mgf016066m Mimulus guttatus mgf016066m N 0.764
mgf019396m Mimulus guttatus mgf019396m N 0.707
PK13311.1 Cannabis sativa PK13311.1 N 0.871
PK22392.1 Cannabis sativa PK22392.1 N 0.729
B9GI65_POPTR Populus trichocarpa POPTR_0001s35360 N 0.914
B9GFZ7_POPTR Populus trichocarpa POPTR_0001s37920 N 0.736
ppa006963m Prunus persica ppa006963m N 0.736
ppa007179m Prunus persica ppa007179m N 0.864
ppa007812m Prunus persica ppa007812m N 0.721