estExt_Genewise1.C_sca_1150143 (Lottia gigantea)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 estExt_Genewise1.C_sca_1150143 T51323_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
PABPC1
M146_0.6 		Homo sapiens ARAAAAM RNAcompete
Ray et al.(2013)
RNCMPT00155 		0.731
PABPC1
M349_0.6 		Homo sapiens ACDAAYM SELEX
Cook et al.(2011)
950_7908267 		0.731
PABPC1
M275_0.6 		Homo sapiens AAAAA SELEX
Cook et al.(2011)
24_7908267 		0.731
PABPC4
M042_0.6 		Homo sapiens AAAAAAR RNAcompete
Ray et al.(2013)
RNCMPT00043 		0.714
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
estExt_Genewise1.C_sca_1150143 RRM 4 74
estExt_Genewise1.C_sca_1150143 RRM 92 160
estExt_Genewise1.C_sca_1150143 RRM 184 253
estExt_Genewise1.C_sca_1150143 RRM 287 355

Links

Other RRM family RBPs
Other Lottia gigantea RBPs

98 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ENSACAG00000016470 Anolis carolinensis ENSACAG00000016470 I 0.728
ENSCAFG00000000567 Canis familiaris ENSCAFG00000000567 I 0.728
LOC100413032 Callithrix jacchus ENSCJAG00000015833 I 0.728
PABPC1 Homo sapiens ENSG00000070756 D 0.728
ENSLAFG00000013994 Loxodonta africana ENSLAFG00000013994 I 0.728
PABPC1 Macaca mulatta ENSMMUG00000017786 I 0.728
XR_030308.1 Monodelphis domestica ENSMODG00000006222 I 0.724
Pabpc1 Mus musculus ENSMUSG00000022283 I 0.728
ENSOANG00000007307 Ornithorhynchus anatinus ENSOANG00000007307 I 0.728
ENSOCUG00000004354 Oryctolagus cuniculus ENSOCUG00000004354 I 0.728
ENSOCUG00000023935 Oryctolagus cuniculus ENSOCUG00000023935 I 0.728
ENSOPRG00000009667 Ochotona princeps ENSOPRG00000009667 I 0.728
PABPC3 Oryzias latipes ENSORLG00000002691 I 0.721
ENSPPYG00000018790 Pongo pygmaeus ENSPPYG00000018790 I 0.728
XR_023909.1 Pan troglodytes ENSPTRG00000020475 I 0.724
ENSPVAG00000016640 Pteropus vampyrus ENSPVAG00000016640 I 0.728
Pabpc1 Rattus norvegicus ENSRNOG00000008639 I 0.728
ENSSSCG00000006063 Sus scrofa ENSSSCG00000006063 I 0.728
PABPC1 Taeniopygia guttata ENSTGUG00000012067 I 0.728
ENSTTRG00000004689 Tursiops truncatus ENSTTRG00000004689 I 0.728