estExt_Genewise1.C_sca_1150143 (Lottia gigantea)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 estExt_Genewise1.C_sca_1150143 T51323_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
PABPC1
M146_0.6 		Homo sapiens ARAAAAM RNAcompete
Ray et al.(2013)
RNCMPT00155 		0.731
PABPC1
M349_0.6 		Homo sapiens ACDAAYM SELEX
Cook et al.(2011)
950_7908267 		0.731
PABPC1
M275_0.6 		Homo sapiens AAAAA SELEX
Cook et al.(2011)
24_7908267 		0.731
PABPC4
M042_0.6 		Homo sapiens AAAAAAR RNAcompete
Ray et al.(2013)
RNCMPT00043 		0.714
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
estExt_Genewise1.C_sca_1150143 RRM 4 74
estExt_Genewise1.C_sca_1150143 RRM 92 160
estExt_Genewise1.C_sca_1150143 RRM 184 253
estExt_Genewise1.C_sca_1150143 RRM 287 355

Links

Other RRM family RBPs
Other Lottia gigantea RBPs

98 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
e_gw1.115.135.1 Lottia gigantea e_gw1.115.135.1 I 0.975
ISCW014211 Ixodes scapularis ISCW014211 I 0.762
BGIBMGA003469 Bombyx mori BGIBMGA003469 I 0.747
pabpc1b Danio rerio ENSDARG00000021140 I 0.732
amel4_ncbi_hmm2036 Apis mellifera amel4_ncbi_hmm2036 I 0.730
amel4_ncbi_hmm1700 Apis mellifera amel4_ncbi_hmm1700 I 0.730
BDE_estExt_fgenesh1_pg.C_380037 Daphnia pulex BDE_estExt_fgenesh1_pg.C_380037 I 0.730
amel4_ncbi_hmm1364 Apis mellifera amel4_ncbi_hmm1364 I 0.730
pabpc1a Danio rerio ENSDARG00000017219 I 0.728
PABPC1 Taeniopygia guttata ENSTGUG00000012067 I 0.728
ENSPVAG00000016640 Pteropus vampyrus ENSPVAG00000016640 I 0.728
PABPC1 Homo sapiens ENSG00000070756 D 0.728
ENSSSCG00000006063 Sus scrofa ENSSSCG00000006063 I 0.728
Pabpc1 Rattus norvegicus ENSRNOG00000008639 I 0.728
ENSPPYG00000018790 Pongo pygmaeus ENSPPYG00000018790 I 0.728
ENSOCUG00000004354 Oryctolagus cuniculus ENSOCUG00000004354 I 0.728
ENSOCUG00000023935 Oryctolagus cuniculus ENSOCUG00000023935 I 0.728
ENSOPRG00000009667 Ochotona princeps ENSOPRG00000009667 I 0.728
ENSOANG00000007307 Ornithorhynchus anatinus ENSOANG00000007307 I 0.728
PABPC4 Oryzias latipes ENSORLG00000017479 I 0.728
PABPC1 Macaca mulatta ENSMMUG00000017786 I 0.728
ENSCAFG00000000567 Canis familiaris ENSCAFG00000000567 I 0.728
Pabpc1 Mus musculus ENSMUSG00000022283 I 0.728
ENSLAFG00000013994 Loxodonta africana ENSLAFG00000013994 I 0.728
LOC100413032 Callithrix jacchus ENSCJAG00000015833 I 0.728
ENSACAG00000016470 Anolis carolinensis ENSACAG00000016470 I 0.728
ENSTTRG00000004689 Tursiops truncatus ENSTTRG00000004689 I 0.728
CpipJ_CPIJ007980 Culex pipiens CpipJ_CPIJ007980 I 0.726
CPIJ007980 Culex quinquefasciatus CPIJ007980 I 0.726
AAEL010318 Aedes aegypti AAEL010318 I 0.726
estExt_Genewise1.C_1790010 Capitella teleta estExt_Genewise1.C_1790010 I 0.725
pabpc1 Xenopus tropicalis ENSXETG00000006635 I 0.724
XR_023909.1 Pan troglodytes ENSPTRG00000020475 I 0.724
XR_030308.1 Monodelphis domestica ENSMODG00000006222 I 0.724
AAH73435 Xenopus laevis AAH73435 I 0.724
PABPC3 Takifugu rubripes ENSTRUG00000011577 I 0.721
PABPC3 Oryzias latipes ENSORLG00000002691 I 0.721
PABPC4 Gasterosteus aculeatus ENSGACG00000007179 I 0.721
PABPC4 Gallus gallus ENSGALG00000003800 I 0.721
PABPC4 Taeniopygia guttata ENSTGUG00000001266 I 0.721
pabpc4 Danio rerio ENSDARG00000059259 I 0.721
PABPC4 Tetraodon nigroviridis ENSTNIG00000016902 I 0.721
Q8QGJ7_FUGRU Takifugu rubripes ENSTRUG00000005907 I 0.721
GI18654 Drosophila mojavensis FBgn0141393 I 0.720
GH21052 Drosophila grimshawi FBgn0128514 I 0.720
nasonia_NCBI_hmm390743 Nasonia vitripennis nasonia_NCBI_hmm390743 I 0.719
PHUM617090 Pediculus humanus PHUM617090 I 0.719
e_gw.313.40.1 Branchiostoma floridae e_gw.313.40.1 I 0.719
gw.1.65.1 Branchiostoma floridae gw.1.65.1 I 0.719
nasonia_NCBI_hmm394743 Nasonia vitripennis nasonia_NCBI_hmm394743 I 0.719
nasonia_NCBI_hmm386743 Nasonia vitripennis nasonia_NCBI_hmm386743 I 0.719
ENSTNIG00000009153 Tetraodon nigroviridis ENSTNIG00000009153 I 0.717
PABPC4 Erinaceus europaeus ENSEEUG00000002962 I 0.717
ENSOANG00000010001 Ornithorhynchus anatinus ENSOANG00000010001 I 0.717
PABPC3 Gasterosteus aculeatus ENSGACG00000003572 I 0.717
PABPC4 Ochotona princeps ENSOPRG00000011984 I 0.717
XP_001177907.1 Strongylocentrotus purpuratus XP_001177907.1 I 0.715
XP_801795.2 Strongylocentrotus purpuratus XP_801795.2 I 0.715
PABPC4 Pan troglodytes ENSPTRG00000000573 I 0.714
PABPC4 Sus scrofa ENSSSCG00000003660 I 0.714
ENSPPYG00000001506 Pongo pygmaeus ENSPPYG00000001506 I 0.714
ENSTRUG00000003767 Takifugu rubripes ENSTRUG00000003767 I 0.714
PABPC4 Macaca mulatta ENSMMUG00000007497 I 0.714
PABPC4 Oryctolagus cuniculus ENSOCUG00000000562 I 0.714
PABPC4 Cavia porcellus ENSCPOG00000009552 I 0.714
LOC100054235 Equus caballus ENSECAG00000009396 I 0.714
PABPC4 Canis familiaris ENSCAFG00000003081 I 0.714
A4IFC3_BOVIN Bos taurus ENSBTAG00000017125 I 0.714
AAH72110 Xenopus laevis AAH72110 I 0.714
AAI08463 Xenopus laevis AAI08463 I 0.714
Q6IP09 Xenopus laevis Q6IP09 I 0.714
PABPC4 Homo sapiens ENSG00000090621 D 0.714
A6MKJ4_CALJA Callithrix jacchus ENSCJAG00000002512 I 0.714
ENSMICG00000000431 Microcebus murinus ENSMICG00000000431 I 0.714
PABPC4 Loxodonta africana ENSLAFG00000000151 I 0.714
PABPC4 Gorilla gorilla ENSGGOG00000004002 I 0.714
GJ21671 Drosophila virilis FBgn0208790 I 0.713
GK19652 Drosophila willistoni FBgn0221650 I 0.713
DGIL_AUG5s5076g2t1 Acyrtosiphon pisum DGIL_AUG5s5076g2t1 I 0.712
AGAP011092 Anopheles gambiae AGAP011092 I 0.712
Ame_R001741 Ailuropoda melanoleuca Ame_R001741 I 0.710
CAA40721 Xenopus laevis CAA40721 I 0.710
Gm10110 Mus musculus ENSMUSG00000062093 I 0.710
AAH52100 Xenopus laevis AAH52100 I 0.710
LOC100411130 Callithrix jacchus ENSCJAG00000018953 I 0.710
P20965 Xenopus laevis P20965 I 0.710
ENSTSYG00000004229 Tarsius syrichta ENSTSYG00000004229 I 0.710
D4AC21_RAT Rattus norvegicus ENSRNOG00000015642 I 0.710
XM_001365232.1 Monodelphis domestica ENSMODG00000017657 I 0.708
Pabpc4 Mus musculus ENSMUSG00000011257 I 0.707
AAA60936 Xenopus laevis AAA60936 I 0.707
ENSPPYG00000005219 Pongo pygmaeus ENSPPYG00000005219 I 0.707
GL11548 Drosophila persimilis FBgn0149157 I 0.706
GA18673-RA Drosophila pseudoobscura FBgn0078673 I 0.706
PABPC3 Macaca mulatta ENSMMUG00000020835 I 0.703
ENSGACG00000003771 Gasterosteus aculeatus ENSGACG00000003771 I 0.703
Pabpc2 Rattus norvegicus ENSRNOG00000014527 I 0.703
ENSCING00000002796 Ciona intestinalis ENSCING00000002796 I 0.700