AAH94189 (Xenopus laevis)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 AAH94189 T59588_0.6 Xenbase (2010-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
ELAVL2
M330_0.6 		Homo sapiens RWUUUAUUUWR SELEX
Cook et al.(2011)
784_7972035 		0.995
ELAVL2
M329_0.6 		Homo sapiens RWUUUAUUUWR SELEX
Cook et al.(2011)
783_7972035 		0.995
ELAVL2
M328_0.6 		Homo sapiens MUYCUUUWUWUUY SELEX
Cook et al.(2011)
782_8497264 		0.995
ELAVL4
M315_0.6 		Homo sapiens Sequence logo not available UUUUUUUUUWAAA RIP-chip
Cook et al.(2011)
619_19846595.2 		0.962
ELAVL4
M314_0.6 		Homo sapiens Sequence logo not available KUUUGUUUKKUUU RIP-chip
Cook et al.(2011)
619_19846595.1 		0.962
ELAVL4
M313_0.6 		Homo sapiens Sequence logo not available CYCUCCYUCYCYC RIP-chip
Cook et al.(2011)
619_19846595 		0.962
ELAVL1
M112_0.6 		Homo sapiens UUURKUU RNAcompete
Ray et al.(2013)
RNCMPT00117 		0.797
ELAVL1
M232_0.6 		Homo sapiens UUUUUUK RNAcompete
Ray et al.(2013)
RNCMPT00274 		0.797
ELAVL1
M108_0.6 		Homo sapiens UUWGUUU RNAcompete
Ray et al.(2013)
RNCMPT00112 		0.797
ELAVL1
M127_0.6 		Homo sapiens UUKRUUU RNAcompete
Ray et al.(2013)
RNCMPT00136 		0.797
ELAVL1
M031_0.6 		Homo sapiens UUDUUUU RNAcompete
Ray et al.(2013)
RNCMPT00032 		0.797
ELAVL1
M327_0.6 		Homo sapiens Sequence logo not available KKNWWDNNNUKNNUUNUNNH RIP-chip
Cook et al.(2011)
714_14981256 		0.797
Rbp9
M124_0.6 		Drosophila melanogaster UUDDGUU RNAcompete
Ray et al.(2013)
RNCMPT00132 		0.727
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
AAH94189 RRM 39 109
AAH94189 RRM 125 193
AAH94189 RRM 278 348

Links

Other RRM family RBPs
Other Xenopus laevis RBPs

191 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
AAH77252 Xenopus laevis AAH77252 I 0.000
AAK26172 Xenopus laevis AAK26172 I 0.000
Ame_R011913 Ailuropoda melanoleuca Ame_R011913 I 0.000
CBF67656 Xenopus laevis CBF67656 I 0.000
CBU92530 Xenopus laevis CBU92530 I 0.000
DAZAP1 Bos taurus ENSBTAG00000019714 I 0.000
DAZAP1 Canis familiaris ENSCAFG00000019528 I 0.000
LOC100395069 Callithrix jacchus ENSCJAG00000005609 I 0.000
DAZAP1 Cavia porcellus ENSCPOG00000020185 I 0.000
dazap1 Danio rerio ENSDARG00000070846 I 0.000
LOC100068825 Equus caballus ENSECAG00000011805 I 0.000
DAZAP1 Echinops telfairi ENSETEG00000008636 I 0.000
DAZAP1 Homo sapiens ENSG00000071626 D 0.000
DAZAP1 Gasterosteus aculeatus ENSGACG00000008259 I 0.000
DAZAP1 Gorilla gorilla ENSGGOG00000002814 I 0.000
DAZAP1 Loxodonta africana ENSLAFG00000018103 I 0.000
ENSMGAG00000004149 Meleagris gallopavo ENSMGAG00000004149 I 0.000
DAZAP1 Myotis lucifugus ENSMLUG00000014975 I 0.000
DAZAP1 Macaca mulatta ENSMMUG00000003047 I 0.000
DAZAP1 Monodelphis domestica ENSMODG00000005157 I 0.000
Dazap1 Mus musculus ENSMUSG00000069565 I 0.000
DAZAP1 Ornithorhynchus anatinus ENSOANG00000014632 I 0.000
DAZAP1 Otolemur garnettii ENSOGAG00000000232 I 0.000
DAZAP1 Oryzias latipes ENSORLG00000008278 I 0.000
ENSPPYG00000009316 Pongo pygmaeus ENSPPYG00000009316 I 0.000
DAZAP1 Pan troglodytes ENSPTRG00000010199 I 0.000
DAZAP1 Pteropus vampyrus ENSPVAG00000003169 I 0.000
Dazap1 Rattus norvegicus ENSRNOG00000031387 I 0.000
DAZAP1 Spermophilus tridecemlineatus ENSSTOG00000006401 I 0.000
DAZAP1 Taeniopygia guttata ENSTGUG00000000869 I 0.000
DAZAP1 Tetraodon nigroviridis ENSTNIG00000010201 I 0.000
DAZAP1 Takifugu rubripes ENSTRUG00000002467 I 0.000
DAZAP1 Tursiops truncatus ENSTTRG00000014336 I 0.000
dazap1 Xenopus tropicalis ENSXETG00000003704 I 0.000
Q98SJ2 Xenopus laevis Q98SJ2 I 0.000