cassava43930.valid.m1 (Manihot esculenta)
CCCH ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH) IPR000571 cassava43930.valid.m1 T04809_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
cassava43930.valid.m1 CCCH ZF 48 74
cassava43930.valid.m1 CCCH ZF 94 120
cassava43930.valid.m1 CCCH ZF 140 166
cassava43930.valid.m1 CCCH ZF 306 332
cassava43930.valid.m1 CCCH ZF 352 378

Links

Other CCCH ZF family RBPs
Other Manihot esculenta RBPs

46 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ppa005813m Prunus persica ppa005813m N 0.704
gw1.151.82.1 Selaginella moellendorfii gw1.151.82.1 N 0.000
gw1.102.25.1 Physcomitrella patens gw1.102.25.1 N 0.719
Glyma20g36140.1 Glycine max Glyma20g36140.1 N 0.711
Glyma18g47660.1 Glycine max Glyma18g47660.1 N 0.000
Glyma10g31370.1 Glycine max Glyma10g31370.1 N 0.733
Glyma09g38650.1 Glycine max Glyma09g38650.1 N 0.704
cassava35635.valid.m1 Manihot esculenta cassava35635.valid.m1 N 0.000
cassava29576.valid.m1 Manihot esculenta cassava29576.valid.m1 N 0.733
mgf007299m Mimulus guttatus mgf007299m N 0.000
GRMZM2G087032 Zea mays GRMZM2G087032 N 0.000
MDP0000665604 Malus x domestica MDP0000665604 N 0.000
MDP0000577111 Malus x domestica MDP0000577111 N 0.000
MDP0000178517 Malus x domestica MDP0000178517 N 0.000
chr1.CM1413.200.nd Lotus japonicus chr1.CM1413.200.nd N 0.719
Medtr7g089530 Medicago truncatula Medtr7g089530 N 0.000
GRMZM2G146514 Zea mays GRMZM2G146514 N 0.000
GRMZM2G107491 Zea mays GRMZM2G107491 N 0.000
GRMZM2G100794 Zea mays GRMZM2G100794 N 0.000
cassava19141.valid.m1 Manihot esculenta cassava19141.valid.m1 N 0.941
cassava17662.valid.m1 Manihot esculenta cassava17662.valid.m1 N 0.726
cassava12890.valid.m1 Manihot esculenta cassava12890.valid.m1 N 0.704
BRADI4G19010 Brachypodium distachyon BRADI4G19010 N 0.000
BRADI4G08050 Brachypodium distachyon BRADI4G08050 N 0.000
BRADI2G58770 Brachypodium distachyon BRADI2G58770 N 0.000
BGIOSIBCE036312 Oryza indica BGIOSIBCE036312 N 0.000
BGIOSIBCE004747 Oryza indica BGIOSIBCE004747 N 0.000
ZFN3 Arabidopsis thaliana AT5G16540-TAIR-G N 0.000
ZFN1 Arabidopsis thaliana AT3G02830-TAIR-G N 0.000
AT2G47850 Arabidopsis thaliana AT2G47850-TAIR-G N 0.719
XM_002882207.1 Arabidopsis lyrata fgenesh2_kg.3__226__AT3G02830.1 N 0.000
XM_002871677.1 Arabidopsis lyrata fgenesh2_kg.6__1644__AT5G16540.1 N 0.000
cassava12889.valid.m1 Manihot esculenta cassava12889.valid.m1 N 0.704
30128.m009030 Ricinus communis 30128.m009030 N 0.726
29726.m004014 Ricinus communis 29726.m004014 N 0.926
XM_002880280.1 Arabidopsis lyrata scaffold_403761.1 N 0.726
Sb03g043810 Sorghum bicolor Sb03g043810 N 0.000
LOC_Os12g21700 Oryza sativa LOC_Os12g21700 N 0.000
LOC_Os11g28270 Oryza sativa LOC_Os11g28270 N 0.000
LOC_Os01g68860 Oryza sativa LOC_Os01g68860 N 0.000
PK23881.1 Cannabis sativa PK23881.1 N 0.000