Glyma18g47660.1 (Glycine max)
CCCH ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH) IPR000571 Glyma18g47660.1 T05467_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
Glyma18g47660.1 CCCH ZF 39 65
Glyma18g47660.1 CCCH ZF 85 110
Glyma18g47660.1 CCCH ZF 130 156
Glyma18g47660.1 CCCH ZF 287 313
Glyma18g47660.1 CCCH ZF 333 359

Links

Other CCCH ZF family RBPs
Other Glycine max RBPs

40 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
PK23881.1 Cannabis sativa PK23881.1 N 0.896
mgf007299m Mimulus guttatus mgf007299m N 0.852
gw1.151.82.1 Selaginella moellendorfii gw1.151.82.1 N 0.711
gw1.102.25.1 Physcomitrella patens gw1.102.25.1 N 0.791
Glyma20g36140.1 Glycine max Glyma20g36140.1 N 0.925
Glyma10g31370.1 Glycine max Glyma10g31370.1 N 0.940
Glyma09g38650.1 Glycine max Glyma09g38650.1 N 0.970
cassava29576.valid.m1 Manihot esculenta cassava29576.valid.m1 N 0.724
cassava19141.valid.m1 Manihot esculenta cassava19141.valid.m1 N 0.716
GRMZM2G087032 Zea mays GRMZM2G087032 N 0.821
GRMZM2G100794 Zea mays GRMZM2G100794 N 0.828
ppa005056m Prunus persica ppa005056m N 0.701
MDP0000665604 Malus x domestica MDP0000665604 N 0.769
MDP0000577111 Malus x domestica MDP0000577111 N 0.769
MDP0000178517 Malus x domestica MDP0000178517 N 0.828
chr1.CM1413.200.nd Lotus japonicus chr1.CM1413.200.nd N 0.948
Medtr7g089530 Medicago truncatula Medtr7g089530 N 0.910
GRMZM2G146514 Zea mays GRMZM2G146514 N 0.851
GRMZM2G107491 Zea mays GRMZM2G107491 N 0.828
cassava17662.valid.m1 Manihot esculenta cassava17662.valid.m1 N 0.918
cassava12890.valid.m1 Manihot esculenta cassava12890.valid.m1 N 0.889
XM_002882207.1 Arabidopsis lyrata fgenesh2_kg.3__226__AT3G02830.1 N 0.851
BRADI4G19010 Brachypodium distachyon BRADI4G19010 N 0.858
BRADI4G08050 Brachypodium distachyon BRADI4G08050 N 0.873
BRADI2G58770 Brachypodium distachyon BRADI2G58770 N 0.821
BGIOSIBCE036312 Oryza indica BGIOSIBCE036312 N 0.836
BGIOSIBCE004747 Oryza indica BGIOSIBCE004747 N 0.769
ZFN3 Arabidopsis thaliana AT5G16540-TAIR-G N 0.851
ZFN1 Arabidopsis thaliana AT3G02830-TAIR-G N 0.851
XM_002871677.1 Arabidopsis lyrata fgenesh2_kg.6__1644__AT5G16540.1 N 0.843
GSVIVG00017774001 Vitis vinifera GSVIVG00017774001 N 0.709
cassava12889.valid.m1 Manihot esculenta cassava12889.valid.m1 N 0.889
30128.m009030 Ricinus communis 30128.m009030 N 0.918
29726.m004014 Ricinus communis 29726.m004014 N 0.701
SB05G013190 Sorghum bicolor Sb05g013190 N 0.851
Sb03g043810 Sorghum bicolor Sb03g043810 N 0.828
LOC_Os12g21700 Oryza sativa LOC_Os12g21700 N 0.881
LOC_Os11g28270 Oryza sativa LOC_Os11g28270 N 0.881
LOC_Os01g68860 Oryza sativa LOC_Os01g68860 N 0.822
ppa005813m Prunus persica ppa005813m N 0.918