PUM2 (Pan troglodytes)
PUF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00806 (PUF) IPR001313 ENSPTRG00000011692 T24258_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
PUM2
M284_0.6 		Homo sapiens Sequence logo not available GNNNNNNNNNNNUGUA yeast three-hybrid s
Cook et al.(2011)
320_15607425 		1.000
PUM2
M280_0.6 		Homo sapiens Sequence logo not available UGUANAUA PAR-clip
Cook et al.(2011)
278_20371350 		1.000
PUM2
M249_0.6 		Homo sapiens Sequence logo not available UGUAHAUA RIP-chip
Cook et al.(2011)
1147_18776931 		1.000
Pum2
M287_0.6 		Mus musculus UGUANAUARNNNNBBBBSCC SELEX
Cook et al.(2011)
330_11780640 		0.996
Pum2
M286_0.6 		Mus musculus UGUA SELEX
Cook et al.(2011)
329_11780640 		0.996
PUM1
M283_0.6 		Homo sapiens Sequence logo not available UGUAHAUA RIP-chip
Cook et al.(2011)
309_18776931 		0.891
PUM1
M255_0.6 		Homo sapiens Sequence logo not available UGUAHAUA RIP-chip
Cook et al.(2011)
1182_18411299 		0.891
pum
M100_0.6 		Drosophila melanogaster UGUAMAK RNAcompete
Ray et al.(2013)
RNCMPT00104 		0.809
pum
M099_0.6 		Drosophila melanogaster UGUAMRK RNAcompete
Ray et al.(2013)
RNCMPT00103 		0.809
pum
M285_0.6 		Drosophila melanogaster Sequence logo not available HHUGUAHAUAHDHWDD RIP-chip
Cook et al.(2011)
323_16537387 		0.809
pum
M098_0.6 		Drosophila melanogaster UGUAYAK RNAcompete
Ray et al.(2013)
RNCMPT00102 		0.809
pum
M101_0.6 		Drosophila melanogaster UGUAWDU RNAcompete
Ray et al.(2013)
RNCMPT00105 		0.809
pum
M097_0.6 		Drosophila melanogaster UGUAMAK RNAcompete
Ray et al.(2013)
RNCMPT00101 		0.809
pum
M045_0.6 		Drosophila melanogaster UGUAHAK RNAcompete
Ray et al.(2013)
RNCMPT00046 		0.809
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSPTRP00000020091 PUF 727 761
ENSPTRP00000020091 PUF 763 795
ENSPTRP00000020091 PUF 799 831
ENSPTRP00000020091 PUF 837 871
ENSPTRP00000020091 PUF 873 907
ENSPTRP00000020091 PUF 909 943
ENSPTRP00000020091 PUF 945 979
ENSPTRP00000020091 PUF 991 1022
ENSPTRP00000041874 PUF 648 682
ENSPTRP00000041874 PUF 684 716
ENSPTRP00000041874 PUF 720 752
ENSPTRP00000041874 PUF 758 792
ENSPTRP00000041874 PUF 794 828
ENSPTRP00000041874 PUF 830 864
ENSPTRP00000041874 PUF 866 900
ENSPTRP00000041874 PUF 912 943

Links

Other PUF family RBPs
Other Pan troglodytes RBPs

90 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Pum2 Mus musculus ENSMUSG00000020594 D 0.996
PUM1 Homo sapiens ENSG00000134644 D 0.905
PUM2 Homo sapiens ENSG00000055917 D 1.000
pum Drosophila melanogaster FBgn0003165 D 0.809
PUM1 Pteropus vampyrus ENSPVAG00000005207 I 0.890
PUM1 Tursiops truncatus ENSTTRG00000007436 I 0.897
PUM2 Vicugna pacos ENSVPAG00000005056 I 1.000
PUM1 Vicugna pacos ENSVPAG00000005902 I 0.901
pum2 Xenopus tropicalis ENSXETG00000008903 I 0.931
GF18428 Drosophila ananassae FBgn0095446 I 0.809
GG17394 Drosophila erecta FBgn0109620 I 0.809
PUM2 Tursiops truncatus ENSTTRG00000004887 I 0.967
PUM2 Tarsius syrichta ENSTSYG00000014463 I 0.978
PUM2 Takifugu rubripes ENSTRUG00000018167 I 0.949
Pum2 Rattus norvegicus ENSRNOG00000006180 I 0.989
Pum1 Rattus norvegicus ENSRNOG00000011709 I 0.890
PUM1 Sorex araneus ENSSARG00000003055 I 0.897
PUM1 Sus scrofa ENSSSCG00000003591 I 0.908
PUM2 Sus scrofa ENSSSCG00000008600 I 0.985
PUM2 Tupaia belangeri ENSTBEG00000008729 I 0.996
PUM2 Taeniopygia guttata ENSTGUG00000013149 I 0.978
PUM1 Tetraodon nigroviridis ENSTNIG00000016983 I 0.883
PUM1 Takifugu rubripes ENSTRUG00000013121 I 0.901
GH15257 Drosophila grimshawi FBgn0122732 I 0.806
GI22503 Drosophila mojavensis FBgn0145231 I 0.799
PASA_GEN_0800110 Daphnia pulex PASA_GEN_0800110 I 0.812
BGIBMGA003401 Bombyx mori BGIBMGA003401 I 0.791
Ame_R002800 Ailuropoda melanoleuca Ame_R002800 I 1.000
Ame_R012380 Ailuropoda melanoleuca Ame_R012380 I 0.901
XP_001187223.1 Strongylocentrotus purpuratus XP_001187223.1 I 0.842
XP_794621.2 Strongylocentrotus purpuratus XP_794621.2 I 0.842
AAH80379 Xenopus laevis AAH80379 I 0.912
AAL14121 Xenopus laevis AAL14121 I 0.908
BAB20864 Xenopus laevis BAB20864 I 0.916
estExt_Genewise1Plus.C_sca_670070 Lottia gigantea estExt_Genewise1Plus.C_sca_670070 I 0.844
estExt_Genewise1Plus.C_4390035 Capitella teleta estExt_Genewise1Plus.C_4390035 I 0.827
GL22345 Drosophila persimilis FBgn0159937 I 0.795
GJ10105 Drosophila virilis FBgn0197393 I 0.802
GK14049 Drosophila willistoni FBgn0216055 I 0.809
GE24797 Drosophila yakuba FBgn0241899 I 0.809
GA27465-RA Drosophila pseudoobscura FBgn0248832 I 0.806
PHUM490070 Pediculus humanus PHUM490070 I 0.802
105390 Helobdella robusta 105390 I 0.715
e_gw1.9.429.1 Trichoplax adhaerens e_gw1.9.429.1 I 0.795
e_gw.54.41.1 Nematostella vectensis e_gw.54.41.1 I 0.812
BAC57980 Xenopus laevis BAC57980 I 0.912
CpipJ_CPIJ016844 Culex pipiens CpipJ_CPIJ016844 I 0.809
PUM1 Canis familiaris ENSCAFG00000011205 I 0.901
ENSCING00000003888 Ciona intestinalis ENSCING00000003888 I 0.745
LOC100415491 Callithrix jacchus ENSCJAG00000006035 I 0.905
PUM2 Callithrix jacchus ENSCJAG00000007450 I 1.000
PUM2 Cavia porcellus ENSCPOG00000007075 I 0.975
PUM1 Equus caballus ENSECAG00000021369 I 0.887
PUM2 Equus caballus ENSECAG00000021930 I 0.985
PUM1 Erinaceus europaeus ENSEEUG00000003871 I 0.897
PUM2 Canis familiaris ENSCAFG00000003839 I 1.000
PUM1 Bos taurus ENSBTAG00000018979 I 0.895
PUM2 Bos taurus ENSBTAG00000011155 I 0.985
amel4_ncbi_hmm4895 Apis mellifera amel4_ncbi_hmm4895 I 0.781
DGIL_AUG5s1082g1t1 Acyrtosiphon pisum DGIL_AUG5s1082g1t1 I 0.788
nasonia_NCBI_hmm823294 Nasonia vitripennis nasonia_NCBI_hmm823294 I 0.798
AAEL012420 Aedes aegypti AAEL012420 I 0.806
AGAP003914 Anopheles gambiae AGAP003914 I 0.805
CPIJ016844 Culex quinquefasciatus CPIJ016844 I 0.809
PUM1 Anolis carolinensis ENSACAG00000000682 I 0.909
PUM2 Anolis carolinensis ENSACAG00000010491 I 0.974
PUM1 Gasterosteus aculeatus ENSGACG00000005717 I 0.901
PUM2 Gasterosteus aculeatus ENSGACG00000009670 I 0.945
PUM1_CHICK Gallus gallus ENSGALG00000000597 I 0.916
ENSOANG00000003230 Ornithorhynchus anatinus ENSOANG00000003230 I 0.978
PUM1 Oryctolagus cuniculus ENSOCUG00000008641 I 0.886
PUM2 Oryctolagus cuniculus ENSOCUG00000017908 I 1.000
PUM1 Oryzias latipes ENSORLG00000011482 I 0.908
PUM2 Oryzias latipes ENSORLG00000012611 I 0.938
ENSPPYG00000001621 Pongo pygmaeus ENSPPYG00000001621 I 0.891
ENSPPYG00000012617 Pongo pygmaeus ENSPPYG00000012617 I 0.985
PUM1 Pan troglodytes ENSPTRG00000000453 I 0.905
Pum1 Mus musculus ENSMUSG00000028580 I 0.890
PUM1 Monodelphis domestica ENSMODG00000017067 I 0.916
PUM2 Monodelphis domestica ENSMODG00000009811 I 0.952
Q2VB18_CHICK Gallus gallus ENSGALG00000016481 I 0.982
PUM2 Gorilla gorilla ENSGGOG00000011374 I 1.000
PUM1 Loxodonta africana ENSLAFG00000003178 I 0.897
PUM2 Loxodonta africana ENSLAFG00000009278 I 0.993
PUM1 Meleagris gallopavo ENSMGAG00000000724 I 0.916
PUM2 Meleagris gallopavo ENSMGAG00000014040 I 0.989
PUM1 Microcebus murinus ENSMICG00000007713 I 0.912
Q3YAQ1_MACMU Macaca mulatta ENSMMUG00000013520 I 0.905