MDP0000119814 (Malus x domestica)
PUF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00806 (PUF) IPR001313 MDP0000119814 T25183_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
MDP0000119814 PUF 777 811
MDP0000119814 PUF 813 847
MDP0000119814 PUF 849 883
MDP0000119814 PUF 885 919
MDP0000119814 PUF 921 955
MDP0000119814 PUF 958 990
MDP0000119814 PUF 1018 1052
MDP0000119814 PUF 1065 1094

Links

Other PUF family RBPs
Other Malus x domestica RBPs

55 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ppa000731m Prunus persica ppa000731m N 0.876
Glyma12g06450.1 Glycine max Glyma12g06450.1 N 0.704
Glyma12g06430.1 Glycine max Glyma12g06430.1 N 0.711
Glyma11g14550.1 Glycine max Glyma11g14550.1 N 0.700
Glyma11g14530.1 Glycine max Glyma11g14530.1 N 0.704
Glyma11g14500.1 Glycine max Glyma11g14500.1 N 0.711
Glyma10g35290.1 Glycine max Glyma10g35290.1 N 0.851
estExt_Genewise1.C_960051 Physcomitrella patens estExt_Genewise1.C_960051 N 0.700
estExt_Genewise1.C_350182 Physcomitrella patens estExt_Genewise1.C_350182 N 0.000
e_gw1.96.1.1 Physcomitrella patens e_gw1.96.1.1 N 0.000
e_gw1.7.1189.1 Selaginella moellendorfii e_gw1.7.1189.1 N 0.000
e_gw1.2.1396.1 Selaginella moellendorfii e_gw1.2.1396.1 N 0.000
Cucsa.308530 Cucumis sativus Cucsa.308530 N 0.851
Cucsa.165170 Cucumis sativus Cucsa.165170 N 0.726
Cucsa.138830 Cucumis sativus Cucsa.138830 N 0.000
cassava33553.m1 Manihot esculenta cassava33553.m1 N 0.833
cassava30949.valid.m1 Manihot esculenta cassava30949.valid.m1 N 0.000
cassava30948.valid.m1 Manihot esculenta cassava30948.valid.m1 N 0.000
Glyma15g04060.1 Glycine max Glyma15g04060.1 N 0.703
gw1.2.45.1 Selaginella moellendorfii gw1.2.45.1 N 0.714
ppa000627m Prunus persica ppa000627m N 0.000
ppa000626m Prunus persica ppa000626m N 0.729
MDP0000776183 Malus x domestica MDP0000776183 N 0.722
MDP0000319167 Malus x domestica MDP0000319167 N 0.000
MDP0000314338 Malus x domestica MDP0000314338 N 0.728
MDP0000176743 Malus x domestica MDP0000176743 N 0.865
Medtr5g087730 Medicago truncatula Medtr5g087730 N 0.000
Medtr4g084270 Medicago truncatula Medtr4g084270 N 0.000
Medtr2g117180 Medicago truncatula Medtr2g117180 N 0.703
Medtr1g120450 Medicago truncatula Medtr1g120450 N 0.833
GRMZM2G123537 Zea mays GRMZM2G123537 N 0.745
GRMZM2G042623 Zea mays GRMZM2G042623 N 0.713
GRMZM2G012964 Zea mays GRMZM2G012964 N 0.703
mgf015734m Mimulus guttatus mgf015734m N 0.707
mgf015234m Mimulus guttatus mgf015234m N 0.000
mgf011401m Mimulus guttatus mgf011401m N 0.778
cassava19437.valid.m1 Manihot esculenta cassava19437.valid.m1 N 0.707
cassava19436.valid.m1 Manihot esculenta cassava19436.valid.m1 N 0.000
LOC_Os01g62650 Oryza sativa LOC_Os01g62650 N 0.732
GSVIVG00024918001 Vitis vinifera GSVIVG00024918001 N 0.715
GSVIVG00016507001 Vitis vinifera GSVIVG00016507001 N 0.755
GSVIVG00016236001 Vitis vinifera GSVIVG00016236001 N 0.815
XM_002880988.1 Arabidopsis lyrata fgenesh2_kg.4__898__AT2G29200.1 N 0.000
XM_002879157.1 Arabidopsis lyrata fgenesh2_kg.4__893__AT2G29140.1 N 0.000
BRADI3G55540 Brachypodium distachyon BRADI3G55540 N 0.767
BRADI2G39410 Brachypodium distachyon BRADI2G39410 N 0.720
BRADI2G39240 Brachypodium distachyon BRADI2G39240 N 0.720
BGIOSIBCE017275 Oryza indica BGIOSIBCE017275 N 0.711
BGIOSIBCE005171 Oryza indica BGIOSIBCE005171 N 0.704
APUM4 Arabidopsis thaliana AT3G10360-TAIR-G N 0.778
APUM1 Arabidopsis thaliana AT2G29200-TAIR-G N 0.000
APUM2 Arabidopsis thaliana AT2G29190-TAIR-G N 0.000
APUM3 Arabidopsis thaliana AT2G29140-TAIR-G N 0.000
PK21390.1 Cannabis sativa PK21390.1 N 0.703
PK01617.1 Cannabis sativa PK01617.1 N 0.833
LOC_Os01g74030 Oryza sativa LOC_Os01g74030 N 0.704
LOC_Os02g57390 Oryza sativa LOC_Os02g57390 N 0.767
cassava13144.valid.m1 Manihot esculenta cassava13144.valid.m1 N 0.736
cassava10774.m1 Manihot esculenta cassava10774.m1 N 0.804
30143.m001164 Ricinus communis 30143.m001164 N 0.733
30143.m001162 Ricinus communis 30143.m001162 N 0.704
29595.m000292 Ricinus communis 29595.m000292 N 0.836
scaffold_4100004.1 Arabidopsis lyrata scaffold_4100004.1 N 0.000
XM_002884744.1 Arabidopsis lyrata scaffold_301182.1 N 0.771
SB09G001090 Sorghum bicolor Sb09g001090 N 0.706
SB04G037410 Sorghum bicolor Sb04g037410 N 0.753
SB03G039600 Sorghum bicolor Sb03g039600 N 0.739
B9HUI2_POPTR Populus trichocarpa POPTR_0010s23250 N 0.793
B9HTG3_POPTR Populus trichocarpa POPTR_0010s20870 N 0.739
B9HPE1_POPTR Populus trichocarpa POPTR_0009s03980 N 0.000
B9HMK2_POPTR Populus trichocarpa POPTR_0008s05850 N 0.736
XM_002311043.1 Populus trichocarpa POPTR_0008s03630 N 0.818
B9GJ97_POPTR Populus trichocarpa POPTR_0001s25020 N 0.000
LOC_Os05g01910 Oryza sativa LOC_Os05g01910 N 0.711
PK00601.1 Cannabis sativa PK00601.1 N 0.736