XM_002884744.1 (Arabidopsis lyrata)
PUF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00806 (PUF) IPR001313 scaffold_301182.1 T24462_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
scaffold_301182.1 PUF 666 700
scaffold_301182.1 PUF 702 736
scaffold_301182.1 PUF 738 772
scaffold_301182.1 PUF 774 808
scaffold_301182.1 PUF 810 844
scaffold_301182.1 PUF 847 881
scaffold_301182.1 PUF 883 916
scaffold_301182.1 PUF 930 955

Links

Other PUF family RBPs
Other Arabidopsis lyrata RBPs

67 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
APUM4 Arabidopsis thaliana AT3G10360-TAIR-G N 0.985
ppa000731m Prunus persica ppa000731m N 0.829
Cucsa.308530 Cucumis sativus Cucsa.308530 N 0.822
cassava33553.m1 Manihot esculenta cassava33553.m1 N 0.815
29595.m000292 Ricinus communis 29595.m000292 N 0.807
Medtr1g120450 Medicago truncatula Medtr1g120450 N 0.797
Glyma10g35290.1 Glycine max Glyma10g35290.1 N 0.793
PK01617.1 Cannabis sativa PK01617.1 N 0.790
GSVIVG00016236001 Vitis vinifera GSVIVG00016236001 N 0.785
B9HUI2_POPTR Populus trichocarpa POPTR_0010s23250 N 0.783
Glyma20g32230.1 Glycine max Glyma20g32230.1 N 0.783
MDP0000176743 Malus x domestica MDP0000176743 N 0.782
XM_002311043.1 Populus trichocarpa POPTR_0008s03630 N 0.775
MDP0000119814 Malus x domestica MDP0000119814 N 0.771
mgf011401m Mimulus guttatus mgf011401m N 0.767
cassava10774.m1 Manihot esculenta cassava10774.m1 N 0.764
SB04G037410 Sorghum bicolor Sb04g037410 N 0.764
GSVIVG00016507001 Vitis vinifera GSVIVG00016507001 N 0.762
GRMZM2G123537 Zea mays GRMZM2G123537 N 0.756
BRADI3G55540 Brachypodium distachyon BRADI3G55540 N 0.756
LOC_Os02g57390 Oryza sativa LOC_Os02g57390 N 0.756
B9HTG3_POPTR Populus trichocarpa POPTR_0010s20870 N 0.754
SB03G039600 Sorghum bicolor Sb03g039600 N 0.754
30143.m001164 Ricinus communis 30143.m001164 N 0.747
B9HMK2_POPTR Populus trichocarpa POPTR_0008s05850 N 0.746
LOC_Os01g62650 Oryza sativa LOC_Os01g62650 N 0.746
ppa000626m Prunus persica ppa000626m N 0.744
cassava13144.valid.m1 Manihot esculenta cassava13144.valid.m1 N 0.743
MDP0000314338 Malus x domestica MDP0000314338 N 0.739
PK00601.1 Cannabis sativa PK00601.1 N 0.736
gw1.2.45.1 Selaginella moellendorfii gw1.2.45.1 N 0.736
GRMZM2G042623 Zea mays GRMZM2G042623 N 0.735
LOC_Os05g01910 Oryza sativa LOC_Os05g01910 N 0.729
BGIOSIBCE017275 Oryza indica BGIOSIBCE017275 N 0.729
MDP0000776183 Malus x domestica MDP0000776183 N 0.726
BGIOSIBCE005171 Oryza indica BGIOSIBCE005171 N 0.721
LOC_Os01g74030 Oryza sativa LOC_Os01g74030 N 0.721
mgf015234m Mimulus guttatus mgf015234m N 0.721
cassava19437.valid.m1 Manihot esculenta cassava19437.valid.m1 N 0.721
SB09G001090 Sorghum bicolor Sb09g001090 N 0.720
BRADI2G39240 Brachypodium distachyon BRADI2G39240 N 0.720
BRADI2G39410 Brachypodium distachyon BRADI2G39410 N 0.720
GSVIVG00024918001 Vitis vinifera GSVIVG00024918001 N 0.718
Cucsa.165170 Cucumis sativus Cucsa.165170 N 0.718
PK21390.1 Cannabis sativa PK21390.1 N 0.717
GRMZM2G012964 Zea mays GRMZM2G012964 N 0.717
Glyma12g06430.1 Glycine max Glyma12g06430.1 N 0.715
e_gw1.96.1.1 Physcomitrella patens e_gw1.96.1.1 N 0.714
Cucsa.138830 Cucumis sativus Cucsa.138830 N 0.714
MDP0000319167 Malus x domestica MDP0000319167 N 0.714
mgf015734m Mimulus guttatus mgf015734m N 0.714
Glyma11g14500.1 Glycine max Glyma11g14500.1 N 0.711
Glyma12g06450.1 Glycine max Glyma12g06450.1 N 0.711
Glyma11g14550.1 Glycine max Glyma11g14550.1 N 0.711
Glyma11g14530.1 Glycine max Glyma11g14530.1 N 0.711
B9HPE1_POPTR Populus trichocarpa POPTR_0009s03980 N 0.710
Medtr2g117180 Medicago truncatula Medtr2g117180 N 0.710
ppa000627m Prunus persica ppa000627m N 0.710
cassava19436.valid.m1 Manihot esculenta cassava19436.valid.m1 N 0.708
30143.m001162 Ricinus communis 30143.m001162 N 0.708
B9GJ97_POPTR Populus trichocarpa POPTR_0001s25020 N 0.708
cassava30948.valid.m1 Manihot esculenta cassava30948.valid.m1 N 0.707
cassava30949.valid.m1 Manihot esculenta cassava30949.valid.m1 N 0.707
estExt_Genewise1.C_350182 Physcomitrella patens estExt_Genewise1.C_350182 N 0.707
e_gw1.2.1396.1 Selaginella moellendorfii e_gw1.2.1396.1 N 0.707
Glyma15g04060.1 Glycine max Glyma15g04060.1 N 0.707
estExt_Genewise1.C_960051 Physcomitrella patens estExt_Genewise1.C_960051 N 0.704