LOC100056901 (Equus caballus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSECAG00000020594 T36684_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
ELAVL4
M313_0.6 		Homo sapiens Sequence logo not available CYCUCCYUCYCYC RIP-chip
Cook et al.(2011)
619_19846595 		0.835
ELAVL4
M315_0.6 		Homo sapiens Sequence logo not available UUUUUUUUUWAAA RIP-chip
Cook et al.(2011)
619_19846595.2 		0.835
ELAVL4
M314_0.6 		Homo sapiens Sequence logo not available KUUUGUUUKKUUU RIP-chip
Cook et al.(2011)
619_19846595.1 		0.835
ELAVL2
M330_0.6 		Homo sapiens RWUUUAUUUWR SELEX
Cook et al.(2011)
784_7972035 		0.825
ELAVL2
M329_0.6 		Homo sapiens RWUUUAUUUWR SELEX
Cook et al.(2011)
783_7972035 		0.825
ELAVL2
M328_0.6 		Homo sapiens MUYCUUUWUWUUY SELEX
Cook et al.(2011)
782_8497264 		0.825
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSECAP00000018129 RRM 40 110
ENSECAP00000018129 RRM 126 194
ENSECAP00000018129 RRM 286 339

Links

Other RRM family RBPs
Other Equus caballus RBPs

112 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ELAVL1 Homo sapiens ENSG00000066044 D 0.000
ELAVL4 Homo sapiens ENSG00000162374 D 0.826
Rbp9 Drosophila melanogaster FBgn0010263 D 0.000
ELAVL2 Homo sapiens ENSG00000107105 D 0.817
ELAVL3 Tupaia belangeri ENSTBEG00000006133 I 0.928
ELAVL1 Spermophilus tridecemlineatus ENSSTOG00000009130 I 0.000
ELAVL2 Spermophilus tridecemlineatus ENSSTOG00000007792 I 0.000
ELAVL4 Spermophilus tridecemlineatus ENSSTOG00000002834 I 0.000
ELAVL3 Sus scrofa ENSSSCG00000013617 I 0.915
ELAVL1 Sus scrofa ENSSSCG00000013592 I 0.000
ELAVL2 Sus scrofa ENSSSCG00000005130 I 0.817
ELAVL4 Sorex araneus ENSSARG00000010733 I 0.826
ELAVL4 Tupaia belangeri ENSTBEG00000011730 I 0.000
ELAVL2 Tupaia belangeri ENSTBEG00000017759 I 0.000
ELAVL1 Takifugu rubripes ENSTRUG00000007296 I 0.000
ELAVL1 Takifugu rubripes ENSTRUG00000004559 I 0.000
ELAVL4 Takifugu rubripes ENSTRUG00000000523 I 0.822
ELAVL1 Tetraodon nigroviridis ENSTNIG00000019823 I 0.000
ELAVL3 Tetraodon nigroviridis ENSTNIG00000018572 I 0.874
ELAVL4 Tetraodon nigroviridis ENSTNIG00000015485 I 0.822
ELAVL2 Tetraodon nigroviridis ENSTNIG00000011312 I 0.808
ELAVL4 Taeniopygia guttata ENSTGUG00000008597 I 0.826
ELAVL2 Taeniopygia guttata ENSTGUG00000001349 I 0.798
ELAVL1 Taeniopygia guttata ENSTGUG00000000118 I 0.000
ELAVL3 Sorex araneus ENSSARG00000005949 I 0.744
ELAVL2 Sorex araneus ENSSARG00000005702 I 0.817
Elavl4 Rattus norvegicus ENSRNOG00000023601 I 0.826
ENSPPYG00000001367 Pongo pygmaeus ENSPPYG00000001367 I 0.826
ELAVL2 Procavia capensis ENSPCAG00000014998 I 0.773
ELAVL4 Procavia capensis ENSPCAG00000008215 I 0.826
ELAVL4 Oryzias latipes ENSORLG00000017130 I 0.826
ELAVL1 Oryzias latipes ENSORLG00000012435 I 0.000
ELAVL3 Oryzias latipes ENSORLG00000005379 I 0.878
ELAVL2 Oryzias latipes ENSORLG00000004217 I 0.816
ELAVL1 Oryzias latipes ENSORLG00000000087 I 0.000
ELAVL4 Ochotona princeps ENSOPRG00000015300 I 0.826
ELAVL2 Ochotona princeps ENSOPRG00000012874 I 0.817
ENSPPYG00000009496 Pongo pygmaeus ENSPPYG00000009496 I 0.000
ENSPPYG00000019166 Pongo pygmaeus ENSPPYG00000019166 I 0.817
Elavl3 Rattus norvegicus ENSRNOG00000013752 I 0.905
Elavl2 Rattus norvegicus ENSRNOG00000006853 I 0.817
Elavl1 Rattus norvegicus ENSRNOG00000001069 I 0.000
ELAVL3 Pteropus vampyrus ENSPVAG00000014893 I 0.915
ELAVL4 Pteropus vampyrus ENSPVAG00000003632 I 0.768
ELAVL2 Pteropus vampyrus ENSPVAG00000002688 I 0.817
ELAVL2 Pan troglodytes ENSPTRG00000020830 I 0.817
ELAVL3 Pan troglodytes ENSPTRG00000010506 I 0.886
ELAVL1 Pan troglodytes ENSPTRG00000010413 I 0.000
ELAVL4 Pan troglodytes ENSPTRG00000000723 I 0.826
ELAVL1 Ochotona princeps ENSOPRG00000009691 I 0.000
ELAVL2 Takifugu rubripes ENSTRUG00000007867 I 0.811
Q91903 Xenopus laevis Q91903 I 0.822
AAA96944 Xenopus laevis AAA96944 I 0.877
AAA96943 Xenopus laevis AAA96943 I 0.822
AAA96942 Xenopus laevis AAA96942 I 0.000
Ame_R010167 Ailuropoda melanoleuca Ame_R010167 I 0.000
Ame_R009760 Ailuropoda melanoleuca Ame_R009760 I 0.826
Ame_R009570 Ailuropoda melanoleuca Ame_R009570 I 0.915
Ame_R004766 Ailuropoda melanoleuca Ame_R004766 I 0.817
fgenesh2_pg.scaffold_219000066 Branchiostoma floridae fgenesh2_pg.scaffold_219000066 I 0.000
fgenesh2_pg.C_sca_14000012 Lottia gigantea fgenesh2_pg.C_sca_14000012 I 0.000
AAA96945 Xenopus laevis AAA96945 I 0.831
AAH86269 Xenopus laevis AAH86269 I 0.000
AAH94189 Xenopus laevis AAH94189 I 0.822
Q91584 Xenopus laevis Q91584 I 0.877
Q5U259 Xenopus laevis Q5U259 I 0.000
Q1JQ73 Xenopus laevis Q1JQ73 I 0.000
CBU92440 Xenopus laevis CBU92440 I 0.831
CBF67567 Xenopus laevis CBF67567 I 0.831
AAI70539 Xenopus laevis AAI70539 I 0.822
AAI69769 Xenopus laevis AAI69769 I 0.877
AAI16460 Xenopus laevis AAI16460 I 0.000
AAH99348 Xenopus laevis AAH99348 I 0.831
fgenesh1_pg.C_scaffold_8000205 Daphnia pulex fgenesh1_pg.C_scaffold_8000205 I 0.000
estExt_Genewise1Plus.C_1660036 Capitella teleta estExt_Genewise1Plus.C_1660036 I 0.000
elavl4 Xenopus tropicalis ENSXETG00000008680 I 0.831
ELAVL4 Vicugna pacos ENSVPAG00000011606 I 0.826
ELAVL2 Vicugna pacos ENSVPAG00000005109 I 0.817
ELAVL2 Tursiops truncatus ENSTTRG00000011656 I 0.812
ELAVL3 Tursiops truncatus ENSTTRG00000001789 I 0.915
ELAVL2 Tarsius syrichta ENSTSYG00000013066 I 0.806
ELAVL1 Tarsius syrichta ENSTSYG00000008248 I 0.000
ELAVL4 Tarsius syrichta ENSTSYG00000004130 I 0.826
elavl3 Xenopus tropicalis ENSXETG00000016741 I 0.873
elavl1 Xenopus tropicalis ENSXETG00000008752 I 0.000
elavl2 Xenopus tropicalis ENSXETG00000009387 I 0.000
GF14992 Drosophila ananassae FBgn0092017 I 0.000
GA28809-RA Drosophila pseudoobscura FBgn0250168 I 0.000
GE18193 Drosophila yakuba FBgn0235624 I 0.000
GK14865 Drosophila willistoni FBgn0216870 I 0.000
GJ13991 Drosophila virilis FBgn0201209 I 0.000
GM18380 Drosophila sechellia FBgn0173287 I 0.000
GL26299 Drosophila persimilis FBgn0163881 I 0.000
GI11879 Drosophila mojavensis FBgn0134637 I 0.000
GH13638 Drosophila grimshawi FBgn0121114 I 0.000
GG24901 Drosophila erecta FBgn0117030 I 0.000
ELAVL3 Takifugu rubripes ENSTRUG00000010719 I 0.886
ELAVL3 Homo sapiens ENSG00000196361 I 0.915
Elavl1 Dipodomys ordii ENSDORG00000009158 I 0.000
Elavl3 Dipodomys ordii ENSDORG00000002538 I 0.891
ELAVL2 Dasypus novemcinctus ENSDNOG00000016605 I 0.000
ELAVL1 Dasypus novemcinctus ENSDNOG00000008797 I 0.000
ELAVL4 Dasypus novemcinctus ENSDNOG00000002932 I 0.826
elavl4 Danio rerio ENSDARG00000045639 I 0.823
elavl2 Danio rerio ENSDARG00000040732 I 0.803
elavl1 Danio rerio ENSDARG00000038695 I 0.000
hug Danio rerio ENSDARG00000016405 I 0.000
Elavl2 Dipodomys ordii ENSDORG00000010437 I 0.817
Elavl4 Dipodomys ordii ENSDORG00000012729 I 0.826
LOC100060819 Equus caballus ENSECAG00000019459 I 0.000
CpipJ_CPIJ000395 Culex pipiens CpipJ_CPIJ000395 I 0.000
ELAVL1 Felis catus ENSFCAG00000014947 I 0.000
ELAVL4 Echinops telfairi ENSETEG00000013779 I 0.000
ELAVL2 Echinops telfairi ENSETEG00000006134 I 0.817
ELAVL4 Erinaceus europaeus ENSEEUG00000008766 I 0.826
ELAVL2 Erinaceus europaeus ENSEEUG00000008733 I 0.000
LOC100051268 Equus caballus ENSECAG00000022284 I 0.826
ELAVL2 Equus caballus ENSECAG00000020142 I 0.817
elavl3 Danio rerio ENSDARG00000014420 I 0.886
ENSCSAVG00000003440 Ciona savignyi ENSCSAVG00000003440 I 0.000
ENSCPOG00000022816 Cavia porcellus ENSCPOG00000022816 I 0.000
Q3ZCE2_BOVIN Bos taurus ENSBTAG00000000613 I 0.000
ELAVL2 Anolis carolinensis ENSACAG00000017521 I 0.822
ELAVL3 Anolis carolinensis ENSACAG00000016958 I 0.882
ELAVL4 Anolis carolinensis ENSACAG00000004527 I 0.826
CPIJ016143 Culex quinquefasciatus CPIJ016143 I 0.000
CPIJ000395 Culex quinquefasciatus CPIJ000395 I 0.000
AGAP000965 Anopheles gambiae AGAP000965 I 0.000
nasonia_NCBI_hmm330804 Nasonia vitripennis nasonia_NCBI_hmm330804 I 0.000
amel4_ncbi_hmm5219 Apis mellifera amel4_ncbi_hmm5219 I 0.000
ELAVL3 Bos taurus ENSBTAG00000014412 I 0.915
A2VDK5_BOVIN Bos taurus ENSBTAG00000021046 I 0.826
ELAVL2 Canis familiaris ENSCAFG00000001688 I 0.817
ELAVL2 Cavia porcellus ENSCPOG00000010472 I 0.817
ENSCPOG00000002044 Cavia porcellus ENSCPOG00000002044 I 0.826
ELAVL4 Callithrix jacchus ENSCJAG00000013725 I 0.826
ELAVL2 Callithrix jacchus ENSCJAG00000008064 I 0.817
ELAVL4 Choloepus hoffmanni ENSCHOG00000002464 I 0.826
ELAVL2 Choloepus hoffmanni ENSCHOG00000000635 I 0.000
ENSCAFG00000018353 Canis familiaris ENSCAFG00000018353 I 0.000
ELAVL3 Canis familiaris ENSCAFG00000017350 I 0.915
ELAVL4 Canis familiaris ENSCAFG00000003927 I 0.826
CpipJ_CPIJ016143 Culex pipiens CpipJ_CPIJ016143 I 0.000
ELAVL4 Otolemur garnettii ENSOGAG00000016990 I 0.826
ELAVL1 Monodelphis domestica ENSMODG00000005041 I 0.000
LOC100015949 Monodelphis domestica ENSMODG00000003936 I 0.822
ENSMODG00000003850 Monodelphis domestica ENSMODG00000003850 I 0.000
ELAVL4 Monodelphis domestica ENSMODG00000001300 I 0.826
ELAVL4 Macaca mulatta ENSMMUG00000021933 I 0.826
LOC708195 Macaca mulatta ENSMMUG00000010038 I 0.817
ELAVL1 Macaca mulatta ENSMMUG00000006544 I 0.000
ELAVL2 Myotis lucifugus ENSMLUG00000014210 I 0.812
ELAVL1 Myotis lucifugus ENSMLUG00000008101 I 0.000
ELAVL3 Monodelphis domestica ENSMODG00000006653 I 0.858
Elavl3 Mus musculus ENSMUSG00000003410 I 0.905
Elavl2 Mus musculus ENSMUSG00000008489 I 0.817
ELAVL2 Otolemur garnettii ENSOGAG00000016228 I 0.000
ELAVL1 Otolemur garnettii ENSOGAG00000012877 I 0.000
ELAVL3 Otolemur garnettii ENSOGAG00000007072 I 0.915
ELAVL4 Oryctolagus cuniculus ENSOCUG00000016262 I 0.826
D7R608_RABIT Oryctolagus cuniculus ENSOCUG00000015871 I 0.000
ELAVL2 Oryctolagus cuniculus ENSOCUG00000005891 I 0.817
ELAVL2 Ornithorhynchus anatinus ENSOANG00000009634 I 0.735
Elavl1 Mus musculus ENSMUSG00000040028 I 0.000
Elavl4 Mus musculus ENSMUSG00000028546 I 0.826
ELAVL4 Myotis lucifugus ENSMLUG00000006226 I 0.826
ELAVL1 Microcebus murinus ENSMICG00000009699 I 0.000
ELAVL4 Microcebus murinus ENSMICG00000003286 I 0.826
ELAVL2 Gorilla gorilla ENSGGOG00000003678 I 0.817
ELAVL4 Gorilla gorilla ENSGGOG00000000634 I 0.826
ELAVL2 Gallus gallus ENSGALG00000015799 I 0.808
Q9PW22_CHICK Gallus gallus ENSGALG00000010533 I 0.826
Q9PW24_CHICK Gallus gallus ENSGALG00000000726 I 0.000
ELAVL2 Gasterosteus aculeatus ENSGACG00000019484 I 0.808
ELAVL3 Gasterosteus aculeatus ENSGACG00000013839 I 0.886
ELAVL1 Gasterosteus aculeatus ENSGACG00000013329 I 0.000
ELAVL4 Gasterosteus aculeatus ENSGACG00000011152 I 0.826
ELAVL1 Gorilla gorilla ENSGGOG00000006100 I 0.000
ELAVL3 Gorilla gorilla ENSGGOG00000008635 I 0.915
ELAVL4 Loxodonta africana ENSLAFG00000001087 I 0.826
ELAVL2 Microcebus murinus ENSMICG00000001558 I 0.000
ELAVL4 Meleagris gallopavo ENSMGAG00000010928 I 0.826
ELAVL1 Meleagris gallopavo ENSMGAG00000001015 I 0.000
ELAVL3 Macropus eugenii ENSMEUG00000016706 I 0.887
ELAVL4 Macropus eugenii ENSMEUG00000007145 I 0.826
ELAVL2 Macropus eugenii ENSMEUG00000006499 I 0.000
ELAVL2 Loxodonta africana ENSLAFG00000009938 I 0.817
ELAVL3 Loxodonta africana ENSLAFG00000005013 I 0.915
ELAVL1 Loxodonta africana ENSLAFG00000004219 I 0.000
ELAVL1 Gasterosteus aculeatus ENSGACG00000010657 I 0.000