LOC_Os01g65550 (Oryza sativa)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 LOC_Os01g65550 T44939_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
AT1G76460-TAIR-G
M239_0.6 		Arabidopsis thaliana DGWGUGD RNAcompete
Ray et al.(2013)
RNCMPT00284 		0.735
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
LOC_Os01g65550.1 RRM 18 76
LOC_Os01g65550.2 RRM 18 76

Links

Other RRM family RBPs
Other Oryza sativa RBPs

84 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
AT1G76460-TAIR-G Arabidopsis thaliana AT1G76460-TAIR-G D 0.735
Glyma12g00500.1 Glycine max Glyma12g00500.1 I 0.932
Glyma13g01740.1 Glycine max Glyma13g01740.1 I 0.721
Glyma14g35110.1 Glycine max Glyma14g35110.1 I 0.706
ppa009964m Prunus persica ppa009964m I 0.721
Glyma16g02120.1 Glycine max Glyma16g02120.1 I 0.710
Glyma16g02220.1 Glycine max Glyma16g02220.1 I 0.735
gw1.126.80.1 Physcomitrella patens gw1.126.80.1 I 0.706
gw1.41.247.1 Selaginella moellendorfii gw1.41.247.1 I 0.721
Glyma09g36880.1 Glycine max Glyma09g36880.1 I 0.932
Glyma07g05670.1 Glycine max Glyma07g05670.1 I 0.735
Glyma06g01670.1 Glycine max Glyma06g01670.1 I 0.791
Glyma04g01590.1 Glycine max Glyma04g01590.1 I 0.791
e_gw1.23.82.1 Selaginella moellendorfii e_gw1.23.82.1 I 0.898
Cucsa.348630 Cucumis sativus Cucsa.348630 I 0.750
Cucsa.005270 Cucumis sativus Cucsa.005270 I 0.779
cassava7423.valid.m1 Manihot esculenta cassava7423.valid.m1 I 0.765
cassava6634.valid.m1 Manihot esculenta cassava6634.valid.m1 I 0.903
cassava6633.valid.m1 Manihot esculenta cassava6633.valid.m1 I 0.903
gw1.51.103.1 Physcomitrella patens gw1.51.103.1 I 0.721
mgf017214m Mimulus guttatus mgf017214m I 0.765
ppa009716m Prunus persica ppa009716m I 0.735
ppa009564m Prunus persica ppa009564m I 0.871
PDK_20s1420851g001 Phoenix dactylifera PDK_20s1420851g001 I 0.932
MDP0000744398 Malus x domestica MDP0000744398 I 0.765
MDP0000548950 Malus x domestica MDP0000548950 I 0.765
MDP0000488395 Malus x domestica MDP0000488395 I 0.750
ppa016222m Prunus persica ppa016222m I 0.750
MDP0000138486 Malus x domestica MDP0000138486 I 0.716
LjT28A08.70.nc Lotus japonicus LjT28A08.70.nc I 0.871
LjSGA_018073.2 Lotus japonicus LjSGA_018073.2 I 0.750
chr1.CM0150.310.nc Lotus japonicus chr1.CM0150.310.nc I 0.885
Medtr4g041420 Medicago truncatula Medtr4g041420 I 0.903
Medtr3g159840 Medicago truncatula Medtr3g159840 I 0.791
CU179634_3 Medicago truncatula CU179634_3 I 0.731
GRMZM2G092493 Zea mays GRMZM2G092493 I 0.729
GRMZM2G019266 Zea mays GRMZM2G019266 I 1.000
GRMZM2G005236 Zea mays GRMZM2G005236 I 0.983
cassava44391.m1 Manihot esculenta cassava44391.m1 I 0.721
PK14266.1 Cannabis sativa PK14266.1 I 0.735
B9GRQ8_POPTR Populus trichocarpa POPTR_0002s17990 I 0.765
B9GPN6_POPTR Populus trichocarpa POPTR_0002s00610 I 0.765
GSVIVG00013430001 Vitis vinifera GSVIVG00013430001 I 0.898
GSVIVG00037134001 Vitis vinifera GSVIVG00037134001 I 0.903
GSVIVG00027434001 Vitis vinifera GSVIVG00027434001 I 0.750
GSVIVG00009045001 Vitis vinifera GSVIVG00009045001 I 0.706
XM_002889039.1 Arabidopsis lyrata fgenesh2_kg.2__1933__AT1G76460.1 I 0.750
XM_002893090.1 Arabidopsis lyrata fgenesh2_kg.1__2278__AT1G20880.1 I 0.864
LOC_Os06g41790 Oryza sativa LOC_Os06g41790 I 0.763
BRADI2G56676 Brachypodium distachyon BRADI2G56676 I 0.983
BGIOSIBCE022665 Oryza indica BGIOSIBCE022665 I 0.763
BGIOSIBCE004465 Oryza indica BGIOSIBCE004465 I 1.000
AT1G20880 Arabidopsis thaliana AT1G20880-TAIR-G I 0.806
PK21213.1 Cannabis sativa PK21213.1 I 0.776
B9H5W4_POPTR Populus trichocarpa POPTR_0005s27810 I 0.779
B9I875_POPTR Populus trichocarpa POPTR_0013s09120 I 0.887
XM_002890498.1 Arabidopsis lyrata scaffold_102598.1 I 0.716
cassava39418.m1 Manihot esculenta cassava39418.m1 I 0.735
cassava32990.m1 Manihot esculenta cassava32990.m1 I 0.750
30170.m013735 Ricinus communis 30170.m013735 I 0.887
AT1G22910 Arabidopsis thaliana AT1G22910-TAIR-G I 0.790
30076.m004440 Ricinus communis 30076.m004440 I 0.735
29983.m003293 Ricinus communis 29983.m003293 I 0.738
29908.m006046 Ricinus communis 29908.m006046 I 0.706
A9PAJ1_POPTR Populus trichocarpa POPTR_0014s10090 I 0.735
SB03G041530 Sorghum bicolor Sb03g041530 I 1.000
GRMZM2G180639 Zea mays GRMZM2G180639 N 0.712
cassava12008.valid.m1 Manihot esculenta cassava12008.valid.m1 N 0.770
AT1G33470 Arabidopsis thaliana AT1G33470-TAIR-G N 0.780
Cucsa.237790 Cucumis sativus Cucsa.237790 N 0.855
PDK_20s1523981g001 Phoenix dactylifera PDK_20s1523981g001 N 0.717
BRADI2G61350 Brachypodium distachyon BRADI2G61350 N 0.729
XM_002329131.1 Populus trichocarpa POPTR_0019s09640 N 0.918
BGIOSIBCE005068 Oryza indica BGIOSIBCE005068 N 0.864
MDP0000271231 Malus x domestica MDP0000271231 N 0.855
mgf002440m Mimulus guttatus mgf002440m N 0.823
SB03G046430 Sorghum bicolor Sb03g046430 N 0.847
SB10G024450 Sorghum bicolor Sb10g024450 N 0.712
XM_002890997.1 Arabidopsis lyrata fgenesh2_kg.1__3472__AT1G33470.1 N 0.780
Glyma01g15840.1 Glycine max Glyma01g15840.1 N 0.797
cassava39894.m1 Manihot esculenta cassava39894.m1 N 0.833
LOC_Os01g72834 Oryza sativa LOC_Os01g72834 N 0.864
MDP0000181802 Malus x domestica MDP0000181802 N 0.855