e_gw.11.168.1 (Nematostella vectensis)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 e_gw.11.168.1 T49713_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
SNRPA
M348_0.6 		Homo sapiens AGGAGAU SELEX
Cook et al.(2011)
949_10094314 		0.833
SNRPA
M347_0.6 		Homo sapiens GAGCAGUAGKS SELEX
Cook et al.(2011)
948_10094314 		0.833
SNRPA
M346_0.6 		Homo sapiens GGGUAUGCUG SELEX
Cook et al.(2011)
947_10094314 		0.833
SNRPA
M345_0.6 		Homo sapiens GWUWCCUGCUA SELEX
Cook et al.(2011)
946_10094314 		0.833
SNRPA
M319_0.6 		Homo sapiens AUUGCAC SELEX
Cook et al.(2011)
663_1717938 		0.833
SNRPA
M318_0.6 		Homo sapiens AUUGCAC SELEX
Cook et al.(2011)
662_1717938 		0.833
SNRPA
M317_0.6 		Homo sapiens AUUGCAC SELEX
Cook et al.(2011)
661_1717938 		0.833
snf
M136_0.6 		Drosophila melanogaster UWGCAC RNAcompete
Ray et al.(2013)
RNCMPT00145 		0.833
SNRPA
M069_0.6 		Homo sapiens WUGCACR RNAcompete
Ray et al.(2013)
RNCMPT00071 		0.833
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
e_gw.11.168.1 RRM 9 80
e_gw.11.168.1 RRM 137 201

Links

Other RRM family RBPs
Other Nematostella vectensis RBPs

120 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
snf Drosophila melanogaster FBgn0003449 D 0.833
SNRPA Homo sapiens ENSG00000077312 D 0.833
SNRPB2 Spermophilus tridecemlineatus ENSSTOG00000009198 I 0.777
SNRPA Tupaia belangeri ENSTBEG00000012717 I 0.833
SNRPB2 Tupaia belangeri ENSTBEG00000012892 I 0.777
SNRPB2 Taeniopygia guttata ENSTGUG00000002415 I 0.784
SNRPB2 Tetraodon nigroviridis ENSTNIG00000002735 I 0.766
SNRPA Tetraodon nigroviridis ENSTNIG00000007732 I 0.804
SNRPB2 Takifugu rubripes ENSTRUG00000009060 I 0.788
SNRPA Takifugu rubripes ENSTRUG00000009703 I 0.819
SNRPB2 Tarsius syrichta ENSTSYG00000008857 I 0.777
SNRPB2 Tursiops truncatus ENSTTRG00000006395 I 0.777
SNRPA Tursiops truncatus ENSTTRG00000007182 I 0.826
SNRPB2 Vicugna pacos ENSVPAG00000004557 I 0.777
SNRPB2 Sus scrofa ENSSSCG00000007081 I 0.777
SNRPA Sus scrofa ENSSSCG00000002998 I 0.833
SNRPA Oryzias latipes ENSORLG00000006536 I 0.832
SNRPB2 Oryzias latipes ENSORLG00000019421 I 0.774
SNRPB2 Procavia capensis ENSPCAG00000003156 I 0.770
SNRPA Procavia capensis ENSPCAG00000012325 I 0.833
ENSPPYG00000010002 Pongo pygmaeus ENSPPYG00000010002 I 0.833
ENSPPYG00000010723 Pongo pygmaeus ENSPPYG00000010723 I 0.777
SNRPA Pan troglodytes ENSPTRG00000011007 I 0.833
SNRPB2 Pan troglodytes ENSPTRG00000013271 I 0.777
SNRPA Pteropus vampyrus ENSPVAG00000001494 I 0.833
SNRPB2 Pteropus vampyrus ENSPVAG00000016140 I 0.741
Snrpa Rattus norvegicus ENSRNOG00000001501 I 0.833
Snrpb2 Rattus norvegicus ENSRNOG00000004967 I 0.777
SNRPB2 Sorex araneus ENSSARG00000002681 I 0.777
SNRPB2 Ochotona princeps ENSOPRG00000011587 I 0.777
snrpb2 Xenopus tropicalis ENSXETG00000003550 I 0.755
snf Drosophila mojavensis FBgn0069598 I 0.841
estExt_fgenesh2_pg.C_3980007 Branchiostoma floridae estExt_fgenesh2_pg.C_3980007 I 0.869
estExt_Genewise1Plus.C_1950032 Capitella teleta estExt_Genewise1Plus.C_1950032 I 0.898
SPA_estExt_Genewise1Plus.C_890021 Daphnia pulex SPA_estExt_Genewise1Plus.C_890021 I 0.832
BGIBMGA012118 Bombyx mori BGIBMGA012118 I 0.841
Ame_R012098 Ailuropoda melanoleuca Ame_R012098 I 0.833
Ame_R017767 Ailuropoda melanoleuca Ame_R017767 I 0.777
XP_001202981.1 Strongylocentrotus purpuratus XP_001202981.1 I 0.741
XP_789234.2 Strongylocentrotus purpuratus XP_789234.2 I 0.741
AAH44979 Xenopus laevis AAH44979 I 0.812
AAH72799 Xenopus laevis AAH72799 I 0.755
AAH84107 Xenopus laevis AAH84107 I 0.754
CAA41021 Xenopus laevis CAA41021 I 0.812
estExt_fgenesh2_pg.C_1420076 Branchiostoma floridae estExt_fgenesh2_pg.C_1420076 I 0.869
e_gw1.38.145.1 Lottia gigantea e_gw1.38.145.1 I 0.870
e_gw1.1.761.1 Trichoplax adhaerens e_gw1.1.761.1 I 0.818
GA18235-RA Drosophila pseudoobscura FBgn0078242 I 0.848
GF21334 Drosophila ananassae FBgn0098336 I 0.848
GG18748 Drosophila erecta FBgn0110957 I 0.833
GH24608 Drosophila grimshawi FBgn0132064 I 0.841
GL14287 Drosophila persimilis FBgn0151892 I 0.848
GM12396 Drosophila sechellia FBgn0167333 I 0.833
GJ16850 Drosophila virilis FBgn0204029 I 0.841
GK25839 Drosophila willistoni FBgn0227798 I 0.841
GE16390 Drosophila yakuba FBgn0233919 I 0.833
105398 Helobdella robusta 105398 I 0.781
186191 Helobdella robusta 186191 I 0.723
Aqu1.229782 Amphimedon queenslandica Aqu1.229782 I 0.784
P45429 Xenopus laevis P45429 I 0.812
SNRPA Ochotona princeps ENSOPRG00000002364 I 0.833
Bm1_37765 Brugia malayi Bm1_37765 I 0.708
LOC477148 Canis familiaris ENSCAFG00000005520 I 0.777
ENSCING00000009501 Ciona intestinalis ENSCING00000009501 I 0.819
LOC100408625 Callithrix jacchus ENSCJAG00000004811 I 0.777
ENSCJAG00000014865 Callithrix jacchus ENSCJAG00000014865 I 0.754
LOC100410790 Callithrix jacchus ENSCJAG00000021962 I 0.819
LOC100394904 Callithrix jacchus ENSCJAG00000022477 I 0.725
LOC100407601 Callithrix jacchus ENSCJAG00000023308 I 0.766
SNRPB2 Cavia porcellus ENSCPOG00000005014 I 0.777
SNRPA Cavia porcellus ENSCPOG00000010875 I 0.833
ENSCSAVG00000000396 Ciona savignyi ENSCSAVG00000000396 I 0.781
snrpa Danio rerio ENSDARG00000018890 I 0.826
snrpb2 Danio rerio ENSDARG00000039424 I 0.796
SNRPA Canis familiaris ENSCAFG00000005091 I 0.833
Q3T0M6_BOVIN Bos taurus ENSBTAG00000027506 I 0.777
SNRPA_BOVIN Bos taurus ENSBTAG00000009077 I 0.833
CpipJ_CPIJ019134 Culex pipiens CpipJ_CPIJ019134 I 0.819
LOAG_02293 Loa loa LOAG_02293 I 0.708
WUBG_10715 Wuchereria bancrofti WUBG_10715 I 0.708
amel4_ncbi_hmm2739 Apis mellifera amel4_ncbi_hmm2739 I 0.856
DGIL_AUG5s14106g2t1 Acyrtosiphon pisum DGIL_AUG5s14106g2t1 I 0.812
nasonia_NCBI_hmm682213 Nasonia vitripennis nasonia_NCBI_hmm682213 I 0.863
AAEL002980 Aedes aegypti AAEL002980 I 0.826
AAEL014167 Aedes aegypti AAEL014167 I 0.826
AGAP011637 Anopheles gambiae AGAP011637 I 0.804
CPIJ019134 Culex quinquefasciatus CPIJ019134 I 0.819
SNRPB2 Anolis carolinensis ENSACAG00000000582 I 0.770
SNRPA Anolis carolinensis ENSACAG00000013557 I 0.819
ENSDORG00000006711 Dipodomys ordii ENSDORG00000006711 I 0.833
LOC100068274 Equus caballus ENSECAG00000013141 I 0.833
LOC100050830 Equus caballus ENSECAG00000018407 I 0.777
SNRPA Myotis lucifugus ENSMLUG00000000219 I 0.833
SNRPB2 Myotis lucifugus ENSMLUG00000008163 I 0.770
SNRPB2 Macaca mulatta ENSMMUG00000014493 I 0.777
SNRPA Macaca mulatta ENSMMUG00000022024 I 0.833
SNRPB2 Monodelphis domestica ENSMODG00000005392 I 0.755
SNRPA Monodelphis domestica ENSMODG00000007912 I 0.841
Snrpb2 Mus musculus ENSMUSG00000008333 I 0.777
Snrpa Mus musculus ENSMUSG00000061479 I 0.826
SNRPB2 Ornithorhynchus anatinus ENSOANG00000001237 I 0.777
SNRPB2 Oryctolagus cuniculus ENSOCUG00000001427 I 0.770
SNRPA Oryctolagus cuniculus ENSOCUG00000024618 I 0.790
SNRPA Otolemur garnettii ENSOGAG00000002864 I 0.833
SNRPB2 Microcebus murinus ENSMICG00000015404 I 0.777
SNRPB2 Meleagris gallopavo ENSMGAG00000006135 I 0.784
SNRPA Macropus eugenii ENSMEUG00000002434 I 0.739
SNRPA Erinaceus europaeus ENSEEUG00000015149 I 0.826
SNRPB2 Echinops telfairi ENSETEG00000001085 I 0.732
SNRPA Echinops telfairi ENSETEG00000019205 I 0.790
SNRPA Felis catus ENSFCAG00000016209 I 0.833
SNRPB2 Homo sapiens ENSG00000125870 I 0.777
SNRPA Gasterosteus aculeatus ENSGACG00000009838 I 0.818
SNRPB2 Gasterosteus aculeatus ENSGACG00000019682 I 0.781
SNRPB2 Gallus gallus ENSGALG00000008729 I 0.784
SNRPA Gorilla gorilla ENSGGOG00000001190 I 0.833
SNRPB2 Gorilla gorilla ENSGGOG00000003937 I 0.777
SNRPB2 Loxodonta africana ENSLAFG00000008775 I 0.777
SNRPA Loxodonta africana ENSLAFG00000026568 I 0.725
SNRPB2 Otolemur garnettii ENSOGAG00000015146 I 0.777