gw1.51.103.1 (Physcomitrella patens)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 gw1.51.103.1 T53297_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
AT1G76460-TAIR-G
M239_0.6 		Arabidopsis thaliana DGWGUGD RNAcompete
Ray et al.(2013)
RNCMPT00284 		0.824
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
gw1.51.103.1 RRM 7 74

Links

Other RRM family RBPs
Other Physcomitrella patens RBPs

115 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
AT1G76460-TAIR-G Arabidopsis thaliana AT1G76460-TAIR-G D 0.824
Glyma13g01740.1 Glycine max Glyma13g01740.1 I 0.794
Glyma14g35110.1 Glycine max Glyma14g35110.1 I 0.779
Glyma16g02120.1 Glycine max Glyma16g02120.1 I 0.797
ppa016222m Prunus persica ppa016222m I 0.794
Glyma16g02220.1 Glycine max Glyma16g02220.1 I 0.824
gw1.126.80.1 Physcomitrella patens gw1.126.80.1 I 0.956
gw1.41.247.1 Selaginella moellendorfii gw1.41.247.1 I 0.838
Glyma12g00500.1 Glycine max Glyma12g00500.1 I 0.000
Glyma09g36880.1 Glycine max Glyma09g36880.1 I 0.000
Glyma07g05670.1 Glycine max Glyma07g05670.1 I 0.824
Glyma06g01670.1 Glycine max Glyma06g01670.1 I 0.824
Glyma04g01590.1 Glycine max Glyma04g01590.1 I 0.809
e_gw1.23.82.1 Selaginella moellendorfii e_gw1.23.82.1 I 0.779
Cucsa.348630 Cucumis sativus Cucsa.348630 I 0.779
Cucsa.005270 Cucumis sativus Cucsa.005270 I 0.882
cassava7423.valid.m1 Manihot esculenta cassava7423.valid.m1 I 0.853
mgf017214m Mimulus guttatus mgf017214m I 0.897
GRMZM2G005236 Zea mays GRMZM2G005236 I 0.721
ppa009716m Prunus persica ppa009716m I 0.824
ppa009564m Prunus persica ppa009564m I 0.721
PDK_20s1420851g001 Phoenix dactylifera PDK_20s1420851g001 I 0.721
MDP0000744398 Malus x domestica MDP0000744398 I 0.794
MDP0000548950 Malus x domestica MDP0000548950 I 0.794
MDP0000488395 Malus x domestica MDP0000488395 I 0.794
ppa018603m Prunus persica ppa018603m I 0.754
MDP0000138486 Malus x domestica MDP0000138486 I 0.853
LjT28A08.70.nc Lotus japonicus LjT28A08.70.nc I 0.735
LjSGA_018073.2 Lotus japonicus LjSGA_018073.2 I 0.809
chr1.CM0150.310.nc Lotus japonicus chr1.CM0150.310.nc I 0.750
Medtr4g041420 Medicago truncatula Medtr4g041420 I 0.706
Medtr3g159840 Medicago truncatula Medtr3g159840 I 0.838
CU179634_3 Medicago truncatula CU179634_3 I 0.838
GRMZM2G092493 Zea mays GRMZM2G092493 I 0.000
GRMZM2G019266 Zea mays GRMZM2G019266 I 0.721
cassava6634.valid.m1 Manihot esculenta cassava6634.valid.m1 I 0.735
cassava44391.m1 Manihot esculenta cassava44391.m1 I 0.794
PK14266.1 Cannabis sativa PK14266.1 I 0.779
B9GPN6_POPTR Populus trichocarpa POPTR_0002s00610 I 0.853
LOC_Os06g41790 Oryza sativa LOC_Os06g41790 I 0.000
LOC_Os01g65550 Oryza sativa LOC_Os01g65550 I 0.721
GSVIVG00037134001 Vitis vinifera GSVIVG00037134001 I 0.706
GSVIVG00027434001 Vitis vinifera GSVIVG00027434001 I 0.779
GSVIVG00013430001 Vitis vinifera GSVIVG00013430001 I 0.765
GSVIVG00009045001 Vitis vinifera GSVIVG00009045001 I 0.838
XM_002889039.1 Arabidopsis lyrata fgenesh2_kg.2__1933__AT1G76460.1 I 0.853
XM_002893090.1 Arabidopsis lyrata fgenesh2_kg.1__2278__AT1G20880.1 I 0.765
BRADI2G56676 Brachypodium distachyon BRADI2G56676 I 0.706
BGIOSIBCE022665 Oryza indica BGIOSIBCE022665 I 0.000
BGIOSIBCE004465 Oryza indica BGIOSIBCE004465 I 0.721
AT1G22910 Arabidopsis thaliana AT1G22910-TAIR-G I 0.750
AT1G20880 Arabidopsis thaliana AT1G20880-TAIR-G I 0.779
PK21213.1 Cannabis sativa PK21213.1 I 0.868
B9GRQ8_POPTR Populus trichocarpa POPTR_0002s17990 I 0.794
B9H5W4_POPTR Populus trichocarpa POPTR_0005s27810 I 0.853
XM_002890498.1 Arabidopsis lyrata scaffold_102598.1 I 0.779
cassava39418.m1 Manihot esculenta cassava39418.m1 I 0.824
cassava32990.m1 Manihot esculenta cassava32990.m1 I 0.779
30170.m013735 Ricinus communis 30170.m013735 I 0.735
30076.m004440 Ricinus communis 30076.m004440 I 0.809
29983.m003293 Ricinus communis 29983.m003293 I 0.706
29908.m006046 Ricinus communis 29908.m006046 I 0.750
B9I875_POPTR Populus trichocarpa POPTR_0013s09120 I 0.000
SB03G041530 Sorghum bicolor Sb03g041530 I 0.721
A9PAJ1_POPTR Populus trichocarpa POPTR_0014s10090 I 0.809
cassava39894.m1 Manihot esculenta cassava39894.m1 N 0.706
mgf002440m Mimulus guttatus mgf002440m N 0.765
Cucsa.237790 Cucumis sativus Cucsa.237790 N 0.721
AT1G33470 Arabidopsis thaliana AT1G33470-TAIR-G N 0.000
cassava12008.valid.m1 Manihot esculenta cassava12008.valid.m1 N 0.000
BGIOSIBCE005068 Oryza indica BGIOSIBCE005068 N 0.706
MDP0000271231 Malus x domestica MDP0000271231 N 0.750
LOC_Os01g72834 Oryza sativa LOC_Os01g72834 N 0.706
Glyma01g15840.1 Glycine max Glyma01g15840.1 N 0.000
XM_002329131.1 Populus trichocarpa POPTR_0019s09640 N 0.000
XM_002890997.1 Arabidopsis lyrata fgenesh2_kg.1__3472__AT1G33470.1 N 0.000
SB03G046430 Sorghum bicolor Sb03g046430 N 0.000
MDP0000181802 Malus x domestica MDP0000181802 N 0.750