PUM1_CHICK (Gallus gallus)
PUF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00806 (PUF) IPR001313 ENSGALG00000000597 T24205_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
PUM1
M283_0.6 		Homo sapiens Sequence logo not available UGUAHAUA RIP-chip
Cook et al.(2011)
309_18776931 		0.960
PUM1
M255_0.6 		Homo sapiens Sequence logo not available UGUAHAUA RIP-chip
Cook et al.(2011)
1182_18411299 		0.960
Pum2
M286_0.6 		Mus musculus UGUA SELEX
Cook et al.(2011)
329_11780640 		0.916
PUM2
M284_0.6 		Homo sapiens Sequence logo not available GNNNNNNNNNNNUGUA yeast three-hybrid s
Cook et al.(2011)
320_15607425 		0.916
PUM2
M280_0.6 		Homo sapiens Sequence logo not available UGUANAUA PAR-clip
Cook et al.(2011)
278_20371350 		0.916
PUM2
M249_0.6 		Homo sapiens Sequence logo not available UGUAHAUA RIP-chip
Cook et al.(2011)
1147_18776931 		0.916
Pum2
M287_0.6 		Mus musculus UGUANAUARNNNNBBBBSCC SELEX
Cook et al.(2011)
330_11780640 		0.916
pum
M100_0.6 		Drosophila melanogaster UGUAMAK RNAcompete
Ray et al.(2013)
RNCMPT00104 		0.791
pum
M099_0.6 		Drosophila melanogaster UGUAMRK RNAcompete
Ray et al.(2013)
RNCMPT00103 		0.791
pum
M285_0.6 		Drosophila melanogaster Sequence logo not available HHUGUAHAUAHDHWDD RIP-chip
Cook et al.(2011)
323_16537387 		0.791
pum
M098_0.6 		Drosophila melanogaster UGUAYAK RNAcompete
Ray et al.(2013)
RNCMPT00102 		0.791
pum
M101_0.6 		Drosophila melanogaster UGUAWDU RNAcompete
Ray et al.(2013)
RNCMPT00105 		0.791
pum
M097_0.6 		Drosophila melanogaster UGUAMAK RNAcompete
Ray et al.(2013)
RNCMPT00101 		0.791
pum
M045_0.6 		Drosophila melanogaster UGUAHAK RNAcompete
Ray et al.(2013)
RNCMPT00046 		0.791
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSGALP00000000832 PUF 849 883
ENSGALP00000000832 PUF 885 917
ENSGALP00000000832 PUF 921 952
ENSGALP00000000832 PUF 959 993
ENSGALP00000000832 PUF 995 1029
ENSGALP00000000832 PUF 1031 1065
ENSGALP00000000832 PUF 1067 1101
ENSGALP00000000832 PUF 1113 1144
ENSGALP00000034555 PUF 753 787
ENSGALP00000034555 PUF 789 821
ENSGALP00000034555 PUF 825 856
ENSGALP00000034555 PUF 863 897
ENSGALP00000034555 PUF 899 933
ENSGALP00000034555 PUF 935 969
ENSGALP00000034555 PUF 971 1005
ENSGALP00000034555 PUF 1017 1048

Links

Other PUF family RBPs
Other Gallus gallus RBPs

89 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
105390 Helobdella robusta 105390 I 0.000
AAEL012420 Aedes aegypti AAEL012420 I 0.788
AAH80379 Xenopus laevis AAH80379 I 0.996
AAL14121 Xenopus laevis AAL14121 I 0.993
AGAP003914 Anopheles gambiae AGAP003914 I 0.787
amel4_ncbi_hmm4895 Apis mellifera amel4_ncbi_hmm4895 I 0.773
Ame_R002800 Ailuropoda melanoleuca Ame_R002800 I 0.916
Ame_R012380 Ailuropoda melanoleuca Ame_R012380 I 0.974
BAB20864 Xenopus laevis BAB20864 I 0.971
BAC57980 Xenopus laevis BAC57980 I 0.996
BGIBMGA003401 Bombyx mori BGIBMGA003401 I 0.781
CPIJ016844 Culex quinquefasciatus CPIJ016844 I 0.788
CpipJ_CPIJ016844 Culex pipiens CpipJ_CPIJ016844 I 0.788
DGIL_AUG5s1082g1t1 Acyrtosiphon pisum DGIL_AUG5s1082g1t1 I 0.773
ENSCING00000003888 Ciona intestinalis ENSCING00000003888 I 0.749
ENSOANG00000003230 Ornithorhynchus anatinus ENSOANG00000003230 I 0.916
ENSPPYG00000001621 Pongo pygmaeus ENSPPYG00000001621 I 0.960
ENSPPYG00000012617 Pongo pygmaeus ENSPPYG00000012617 I 0.913
estExt_Genewise1Plus.C_4390035 Capitella teleta estExt_Genewise1Plus.C_4390035 I 0.812
estExt_Genewise1Plus.C_sca_670070 Lottia gigantea estExt_Genewise1Plus.C_sca_670070 I 0.804
e_gw.54.41.1 Nematostella vectensis e_gw.54.41.1 I 0.827
e_gw1.9.429.1 Trichoplax adhaerens e_gw1.9.429.1 I 0.773
GA27465-RA Drosophila pseudoobscura FBgn0248832 I 0.784
GF18428 Drosophila ananassae FBgn0095446 I 0.788
GG17394 Drosophila erecta FBgn0109620 I 0.788
GH15257 Drosophila grimshawi FBgn0122732 I 0.784
GI22503 Drosophila mojavensis FBgn0145231 I 0.784
GJ10105 Drosophila virilis FBgn0197393 I 0.781
GK14049 Drosophila willistoni FBgn0216055 I 0.788
GL22345 Drosophila persimilis FBgn0159937 I 0.777
GM26283 Drosophila sechellia FBgn0181138 I 0.791
LOC100415491 Callithrix jacchus ENSCJAG00000006035 I 0.971
nasonia_NCBI_hmm823294 Nasonia vitripennis nasonia_NCBI_hmm823294 I 0.787
PASA_GEN_0800110 Daphnia pulex PASA_GEN_0800110 I 0.801
PHUM490070 Pediculus humanus PHUM490070 I 0.784
pum Drosophila melanogaster FBgn0003165 D 0.791
PUM1 Vicugna pacos ENSVPAG00000005902 I 0.974
PUM1 Pteropus vampyrus ENSPVAG00000005207 I 0.963
Pum1 Rattus norvegicus ENSRNOG00000011709 I 0.963
PUM1 Sorex araneus ENSSARG00000003055 I 0.971
PUM1 Gasterosteus aculeatus ENSGACG00000005717 I 0.934
PUM1 Tetraodon nigroviridis ENSTNIG00000016983 I 0.916
PUM1 Tursiops truncatus ENSTTRG00000007436 I 0.963
PUM1 Sus scrofa ENSSSCG00000003591 I 0.967
PUM1 Pan troglodytes ENSPTRG00000000453 I 0.971
PUM1 Oryctolagus cuniculus ENSOCUG00000008641 I 0.963
PUM1 Microcebus murinus ENSMICG00000007713 I 0.989
PUM1 Takifugu rubripes ENSTRUG00000013121 I 0.934
PUM1 Meleagris gallopavo ENSMGAG00000000724 I 1.000
PUM1 Monodelphis domestica ENSMODG00000017067 I 1.000
PUM1 Homo sapiens ENSG00000134644 D 0.971
PUM1 Erinaceus europaeus ENSEEUG00000003871 I 0.978
PUM1 Anolis carolinensis ENSACAG00000000682 I 0.989
PUM1 Equus caballus ENSECAG00000021369 I 0.960
Pum1 Mus musculus ENSMUSG00000028580 I 0.963
PUM1 Loxodonta africana ENSLAFG00000003178 I 0.974
PUM1 Oryzias latipes ENSORLG00000011482 I 0.952
PUM1 Bos taurus ENSBTAG00000018979 I 0.964
PUM1 Canis familiaris ENSCAFG00000011205 I 0.974
PUM2 Equus caballus ENSECAG00000021930 I 0.913
PUM2 Gorilla gorilla ENSGGOG00000011374 I 0.916
pum2 Xenopus tropicalis ENSXETG00000008903 I 0.887
PUM2 Gasterosteus aculeatus ENSGACG00000009670 I 0.879
PUM2 Anolis carolinensis ENSACAG00000010491 I 0.919
PUM2 Canis familiaris ENSCAFG00000003839 I 0.916
PUM2 Bos taurus ENSBTAG00000011155 I 0.913
PUM2 Callithrix jacchus ENSCJAG00000007450 I 0.916
PUM2 Homo sapiens ENSG00000055917 D 0.916
PUM2 Cavia porcellus ENSCPOG00000007075 I 0.905
PUM2 Loxodonta africana ENSLAFG00000009278 I 0.916
PUM2 Oryzias latipes ENSORLG00000012611 I 0.879
Pum2 Rattus norvegicus ENSRNOG00000006180 I 0.912
PUM2 Oryctolagus cuniculus ENSOCUG00000017908 I 0.916
PUM2 Sus scrofa ENSSSCG00000008600 I 0.913
PUM2 Tupaia belangeri ENSTBEG00000008729 I 0.912
PUM2 Taeniopygia guttata ENSTGUG00000013149 I 0.916
PUM2 Monodelphis domestica ENSMODG00000009811 I 0.897
PUM2 Takifugu rubripes ENSTRUG00000018167 I 0.883
PUM2 Tarsius syrichta ENSTSYG00000014463 I 0.894
PUM2 Tursiops truncatus ENSTTRG00000004887 I 0.883
Pum2 Mus musculus ENSMUSG00000020594 D 0.916
PUM2 Vicugna pacos ENSVPAG00000005056 I 0.916
PUM2 Meleagris gallopavo ENSMGAG00000014040 I 0.926
PUM2 Pan troglodytes ENSPTRG00000011692 I 0.916
Q2VB18_CHICK Gallus gallus ENSGALG00000016481 I 0.916
Q3YAQ1_MACMU Macaca mulatta ENSMMUG00000013520 I 0.971
XP_001187223.1 Strongylocentrotus purpuratus XP_001187223.1 I 0.828
XP_794621.2 Strongylocentrotus purpuratus XP_794621.2 I 0.828