nasonia_NCBI_hmm330804 (Nasonia vitripennis)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 nasonia_NCBI_hmm330804 T32217_0.6 DroSpeGe (2008-Jul-18)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
Rbp9
M124_0.6 		Drosophila melanogaster UUDDGUU RNAcompete
Ray et al.(2013)
RNCMPT00132 		0.884
ELAVL4
M315_0.6 		Homo sapiens Sequence logo not available UUUUUUUUUWAAA RIP-chip
Cook et al.(2011)
619_19846595.2 		0.783
ELAVL4
M314_0.6 		Homo sapiens Sequence logo not available KUUUGUUUKKUUU RIP-chip
Cook et al.(2011)
619_19846595.1 		0.783
ELAVL4
M313_0.6 		Homo sapiens Sequence logo not available CYCUCCYUCYCYC RIP-chip
Cook et al.(2011)
619_19846595 		0.783
ELAVL2
M330_0.6 		Homo sapiens RWUUUAUUUWR SELEX
Cook et al.(2011)
784_7972035 		0.774
ELAVL2
M329_0.6 		Homo sapiens RWUUUAUUUWR SELEX
Cook et al.(2011)
783_7972035 		0.774
ELAVL2
M328_0.6 		Homo sapiens MUYCUUUWUWUUY SELEX
Cook et al.(2011)
782_8497264 		0.774
ELAVL1
M232_0.6 		Homo sapiens UUUUUUK RNAcompete
Ray et al.(2013)
RNCMPT00274 		0.720
ELAVL1
M108_0.6 		Homo sapiens UUWGUUU RNAcompete
Ray et al.(2013)
RNCMPT00112 		0.720
ELAVL1
M031_0.6 		Homo sapiens UUDUUUU RNAcompete
Ray et al.(2013)
RNCMPT00032 		0.720
ELAVL1
M127_0.6 		Homo sapiens UUKRUUU RNAcompete
Ray et al.(2013)
RNCMPT00136 		0.720
ELAVL1
M327_0.6 		Homo sapiens Sequence logo not available KKNWWDNNNUKNNUUNUNNH RIP-chip
Cook et al.(2011)
714_14981256 		0.720
ELAVL1
M112_0.6 		Homo sapiens UUURKUU RNAcompete
Ray et al.(2013)
RNCMPT00117 		0.720
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
nasonia_NCBI_hmm330804 RRM 29 99
nasonia_NCBI_hmm330804 RRM 115 183
nasonia_NCBI_hmm330804 RRM 263 333

Links

Other RRM family RBPs
Other Nasonia vitripennis RBPs

180 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
185541 Helobdella robusta 185541 I 0.744
187316 Helobdella robusta 187316 N 0.749
A2VDK5_BOVIN Bos taurus ENSBTAG00000021046 I 0.783
AAA96942 Xenopus laevis AAA96942 I 0.720
AAA96943 Xenopus laevis AAA96943 I 0.770
AAA96944 Xenopus laevis AAA96944 I 0.746
AAA96945 Xenopus laevis AAA96945 I 0.778
AAEL008164 Aedes aegypti AAEL008164 N 0.732
AAH86269 Xenopus laevis AAH86269 I 0.716
AAH94189 Xenopus laevis AAH94189 I 0.774
AAH99348 Xenopus laevis AAH99348 I 0.778
AAI69769 Xenopus laevis AAI69769 I 0.746
AAI70539 Xenopus laevis AAI70539 I 0.774
AGAP000965 Anopheles gambiae AGAP000965 I 0.915
AGAP001883 Anopheles gambiae AGAP001883 N 0.745
amel4_ncbi_hmm5219 Apis mellifera amel4_ncbi_hmm5219 I 0.981
Ame_R004766 Ailuropoda melanoleuca Ame_R004766 I 0.774
Ame_R009570 Ailuropoda melanoleuca Ame_R009570 I 0.750
Ame_R009760 Ailuropoda melanoleuca Ame_R009760 I 0.783
Ame_R010167 Ailuropoda melanoleuca Ame_R010167 I 0.720
Bm1_43995 Brugia malayi Bm1_43995 N 0.724
CAA59430 Xenopus laevis CAA59430 I 0.765
CBF67567 Xenopus laevis CBF67567 I 0.778
CBU92440 Xenopus laevis CBU92440 I 0.778
CPIJ000395 Culex quinquefasciatus CPIJ000395 I 0.879
CPIJ008385 Culex quinquefasciatus CPIJ008385 N 0.727
CPIJ016143 Culex quinquefasciatus CPIJ016143 I 0.910
CpipJ_CPIJ000395 Culex pipiens CpipJ_CPIJ000395 I 0.879
CpipJ_CPIJ008385 Culex pipiens CpipJ_CPIJ008385 N 0.727
CpipJ_CPIJ016143 Culex pipiens CpipJ_CPIJ016143 I 0.910
D7R608_RABIT Oryctolagus cuniculus ENSOCUG00000015871 I 0.730
ELAVL1 Oryzias latipes ENSORLG00000012435 I 0.714
ELAVL1 Gorilla gorilla ENSGGOG00000006100 I 0.720
ELAVL1 Pan troglodytes ENSPTRG00000010413 I 0.720
ELAVL1 Macaca mulatta ENSMMUG00000006544 I 0.720
Elavl1 Rattus norvegicus ENSRNOG00000001069 I 0.720
ELAVL1 Sus scrofa ENSSSCG00000013592 I 0.725
ELAVL1 Loxodonta africana ENSLAFG00000004219 I 0.720
ELAVL1 Ochotona princeps ENSOPRG00000009691 I 0.730
ELAVL1 Otolemur garnettii ENSOGAG00000012877 I 0.720
ELAVL1 Meleagris gallopavo ENSMGAG00000001015 I 0.720
Elavl1 Mus musculus ENSMUSG00000040028 I 0.720
ELAVL1 Microcebus murinus ENSMICG00000009699 I 0.720
ELAVL1 Monodelphis domestica ENSMODG00000005041 I 0.720
ELAVL1 Myotis lucifugus ENSMLUG00000008101 I 0.725
ELAVL1 Spermophilus tridecemlineatus ENSSTOG00000009130 I 0.711
ELAVL1 Taeniopygia guttata ENSTGUG00000000118 I 0.720
ELAVL1 Homo sapiens ENSG00000066044 D 0.720
ELAVL1 Felis catus ENSFCAG00000014947 I 0.720
elavl1 Danio rerio ENSDARG00000038695 I 0.708
elavl1 Xenopus tropicalis ENSXETG00000008752 I 0.720
ELAVL1 Dasypus novemcinctus ENSDNOG00000008797 I 0.706
Elavl1 Dipodomys ordii ENSDORG00000009158 I 0.720
ELAVL1 Tarsius syrichta ENSTSYG00000008248 I 0.720
ELAVL1 Takifugu rubripes ENSTRUG00000007296 I 0.703
ELAVL1 Takifugu rubripes ENSTRUG00000004559 I 0.708
ELAVL1 Tetraodon nigroviridis ENSTNIG00000019823 I 0.703
ELAVL2 Procavia capensis ENSPCAG00000014998 I 0.717
ELAVL2 Taeniopygia guttata ENSTGUG00000001349 I 0.750
ELAVL2 Sus scrofa ENSSSCG00000005130 I 0.774
Elavl2 Mus musculus ENSMUSG00000008489 I 0.774
ELAVL2 Sorex araneus ENSSARG00000005702 I 0.774
ELAVL2 Vicugna pacos ENSVPAG00000005109 I 0.774
ELAVL2 Oryctolagus cuniculus ENSOCUG00000005891 I 0.774
Elavl2 Rattus norvegicus ENSRNOG00000006853 I 0.774
ELAVL2 Tursiops truncatus ENSTTRG00000011656 I 0.774
ELAVL2 Tetraodon nigroviridis ENSTNIG00000011312 I 0.778
ELAVL2 Tarsius syrichta ENSTSYG00000013066 I 0.741
ELAVL2 Ochotona princeps ENSOPRG00000012874 I 0.774
ELAVL2 Pteropus vampyrus ENSPVAG00000002688 I 0.774
ELAVL2 Oryzias latipes ENSORLG00000004217 I 0.783
ELAVL2 Takifugu rubripes ENSTRUG00000007867 I 0.782
ELAVL2 Pan troglodytes ENSPTRG00000020830 I 0.774
ELAVL2 Homo sapiens ENSG00000107105 D 0.774
ELAVL2 Canis familiaris ENSCAFG00000001688 I 0.774
ELAVL2 Equus caballus ENSECAG00000020142 I 0.774
ELAVL2 Loxodonta africana ENSLAFG00000009938 I 0.774
ELAVL2 Gallus gallus ENSGALG00000015799 I 0.764
ELAVL2 Gorilla gorilla ENSGGOG00000003678 I 0.774
Elavl2 Dipodomys ordii ENSDORG00000010437 I 0.774
ELAVL2 Callithrix jacchus ENSCJAG00000008064 I 0.774
ELAVL2 Anolis carolinensis ENSACAG00000017521 I 0.774
ELAVL2 Gasterosteus aculeatus ENSGACG00000019484 I 0.778
elavl2 Danio rerio ENSDARG00000040732 I 0.788
ELAVL2 Cavia porcellus ENSCPOG00000010472 I 0.774
ELAVL2 Echinops telfairi ENSETEG00000006134 I 0.774
ELAVL2 Myotis lucifugus ENSMLUG00000014210 I 0.769
ELAVL3 Gasterosteus aculeatus ENSGACG00000013839 I 0.764
ELAVL3 Tetraodon nigroviridis ENSTNIG00000018572 I 0.753
Elavl3 Rattus norvegicus ENSRNOG00000013752 I 0.750
ELAVL3 Pan troglodytes ENSPTRG00000010506 I 0.726
ELAVL3 Sus scrofa ENSSSCG00000013617 I 0.750
ELAVL3 Homo sapiens ENSG00000196361 I 0.750
ELAVL3 Bos taurus ENSBTAG00000014412 I 0.750
ELAVL3 Pteropus vampyrus ENSPVAG00000014893 I 0.750
Elavl3 Mus musculus ENSMUSG00000003410 I 0.750
elavl3 Xenopus tropicalis ENSXETG00000016741 I 0.743
ELAVL3 Anolis carolinensis ENSACAG00000016958 I 0.742
ELAVL3 Takifugu rubripes ENSTRUG00000010719 I 0.764
ELAVL3 Tursiops truncatus ENSTTRG00000001789 I 0.750
ELAVL3 Macropus eugenii ENSMEUG00000016706 I 0.746
ELAVL3 Monodelphis domestica ENSMODG00000006653 I 0.722
elavl3 Danio rerio ENSDARG00000014420 I 0.764
Elavl3 Dipodomys ordii ENSDORG00000002538 I 0.745
ELAVL3 Loxodonta africana ENSLAFG00000005013 I 0.750
ELAVL3 Oryzias latipes ENSORLG00000005379 I 0.757
ELAVL3 Gorilla gorilla ENSGGOG00000008635 I 0.750
ELAVL3 Otolemur garnettii ENSOGAG00000007072 I 0.750
ELAVL3 Canis familiaris ENSCAFG00000017350 I 0.750
elavl4 Xenopus tropicalis ENSXETG00000008680 I 0.778
ELAVL4 Tetraodon nigroviridis ENSTNIG00000015485 I 0.783
ELAVL4 Callithrix jacchus ENSCJAG00000013725 I 0.783
elavl4 Danio rerio ENSDARG00000045639 I 0.776
ELAVL4 Takifugu rubripes ENSTRUG00000000523 I 0.783
ELAVL4 Canis familiaris ENSCAFG00000003927 I 0.783
ELAVL4 Microcebus murinus ENSMICG00000003286 I 0.783
ELAVL4 Vicugna pacos ENSVPAG00000011606 I 0.783
ELAVL4 Dasypus novemcinctus ENSDNOG00000002932 I 0.783
Elavl4 Dipodomys ordii ENSDORG00000012729 I 0.783
ELAVL4 Tarsius syrichta ENSTSYG00000004130 I 0.783
ELAVL4 Erinaceus europaeus ENSEEUG00000008766 I 0.783
ELAVL4 Taeniopygia guttata ENSTGUG00000008597 I 0.783
ELAVL4 Otolemur garnettii ENSOGAG00000016990 I 0.783
ELAVL4 Macropus eugenii ENSMEUG00000007145 I 0.783
ELAVL4 Sorex araneus ENSSARG00000010733 I 0.783
ELAVL4 Oryctolagus cuniculus ENSOCUG00000016262 I 0.783
ELAVL4 Meleagris gallopavo ENSMGAG00000010928 I 0.779
Elavl4 Mus musculus ENSMUSG00000028546 I 0.783
ELAVL4 Myotis lucifugus ENSMLUG00000006226 I 0.783
ELAVL4 Anolis carolinensis ENSACAG00000004527 I 0.783
ELAVL4 Monodelphis domestica ENSMODG00000001300 I 0.783
ELAVL4 Ochotona princeps ENSOPRG00000015300 I 0.783
ELAVL4 Loxodonta africana ENSLAFG00000001087 I 0.783
ELAVL4 Oryzias latipes ENSORLG00000017130 I 0.778
ELAVL4 Choloepus hoffmanni ENSCHOG00000002464 I 0.783
ELAVL4 Homo sapiens ENSG00000162374 D 0.783
ELAVL4 Gasterosteus aculeatus ENSGACG00000011152 I 0.778
Elavl4 Rattus norvegicus ENSRNOG00000023601 I 0.783
ELAVL4 Pan troglodytes ENSPTRG00000000723 I 0.783
ELAVL4 Pteropus vampyrus ENSPVAG00000003632 I 0.726
ELAVL4 Gorilla gorilla ENSGGOG00000000634 I 0.783
ELAVL4 Procavia capensis ENSPCAG00000008215 I 0.783
ELAVL4 Macaca mulatta ENSMMUG00000021933 I 0.783
ENSCAFG00000018353 Canis familiaris ENSCAFG00000018353 I 0.720
ENSCPOG00000002044 Cavia porcellus ENSCPOG00000002044 I 0.783
ENSCSAVG00000003440 Ciona savignyi ENSCSAVG00000003440 I 0.764
ENSPPYG00000001367 Pongo pygmaeus ENSPPYG00000001367 I 0.783
ENSPPYG00000009496 Pongo pygmaeus ENSPPYG00000009496 I 0.720
ENSPPYG00000019166 Pongo pygmaeus ENSPPYG00000019166 I 0.774
estExt_Genewise1Plus.C_1660036 Capitella teleta estExt_Genewise1Plus.C_1660036 I 0.816
fgenesh1_pg.C_scaffold_8000205 Daphnia pulex fgenesh1_pg.C_scaffold_8000205 I 0.844
fgenesh2_pg.C_sca_14000012 Lottia gigantea fgenesh2_pg.C_sca_14000012 I 0.844
fgenesh2_pg.scaffold_219000066 Branchiostoma floridae fgenesh2_pg.scaffold_219000066 I 0.830
GA28809-RA Drosophila pseudoobscura FBgn0250168 I 0.889
GD16475 Drosophila simulans FBgn0188089 N 0.730
GE18193 Drosophila yakuba FBgn0235624 I 0.889
GF14992 Drosophila ananassae FBgn0092017 I 0.889
GG12756 Drosophila erecta FBgn0105043 N 0.730
GG24901 Drosophila erecta FBgn0117030 I 0.889
GH13638 Drosophila grimshawi FBgn0121114 I 0.905
GI11879 Drosophila mojavensis FBgn0134637 I 0.889
GJ13991 Drosophila virilis FBgn0201209 I 0.889
GK14865 Drosophila willistoni FBgn0216870 I 0.889
GL26299 Drosophila persimilis FBgn0163881 I 0.910
GM18380 Drosophila sechellia FBgn0173287 I 0.889
GM19036 Drosophila sechellia FBgn0173939 N 0.730
hug Danio rerio ENSDARG00000016405 I 0.722
ISCW010302 Ixodes scapularis ISCW010302 N 0.739
LOAG_11702 Loa loa LOAG_11702 N 0.735
LOC100015949 Monodelphis domestica ENSMODG00000003936 I 0.774
LOC100051268 Equus caballus ENSECAG00000022284 I 0.783
LOC100060819 Equus caballus ENSECAG00000019459 I 0.716
LOC708195 Macaca mulatta ENSMMUG00000010038 I 0.774
Q3ZCE2_BOVIN Bos taurus ENSBTAG00000000613 I 0.725
Q5U259 Xenopus laevis Q5U259 I 0.716
Q91584 Xenopus laevis Q91584 I 0.746
Q91903 Xenopus laevis Q91903 I 0.770
Q9PW22_CHICK Gallus gallus ENSGALG00000010533 I 0.783
Q9PW24_CHICK Gallus gallus ENSGALG00000000726 I 0.720
Rbp9 Drosophila melanogaster FBgn0010263 D 0.905