ENSCJAG00000001353 (Callithrix jacchus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSCJAG00000001353 T35466_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
HNRNPA1
M312_0.6 		Homo sapiens Sequence logo not available UAGGGW RIP-chip
Cook et al.(2011)
560_17925491 		0.936
HNRNPA1
M271_0.6 		Homo sapiens UAGGGW SELEX
Cook et al.(2011)
23_7510636 		0.936
HNRNPA1
M022_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00022 		0.936
HNRNPA1L2
M023_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00023 		0.915
HNRNPA2B1
M024_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00024 		0.773
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSCJAP00000002389 RRM 16 84
ENSCJAP00000002389 RRM 106 175

Links

Other RRM family RBPs
Other Callithrix jacchus RBPs

317 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
AAA49741 Xenopus laevis AAA49741 I 0.831
AAA49742 Xenopus laevis AAA49742 I 0.831
AAA49948 Xenopus laevis AAA49948 I 0.729
AAA49949 Xenopus laevis AAA49949 I 0.796
AAA49950 Xenopus laevis AAA49950 I 0.785
AAB59951 Xenopus laevis AAB59951 I 0.715
AAH43750 Xenopus laevis AAH43750 I 0.715
AAH45260 Xenopus laevis AAH45260 I 0.845
AAH46692 Xenopus laevis AAH46692 I 0.729
AAH72090 Xenopus laevis AAH72090 I 0.845
AAI06633 Xenopus laevis AAI06633 I 0.715
AAI69881 Xenopus laevis AAI69881 I 0.785
Ame_R000626 Ailuropoda melanoleuca Ame_R000626 I 0.736
Ame_R011792 Ailuropoda melanoleuca Ame_R011792 I 0.915
CBF67555 Xenopus laevis CBF67555 I 0.831
CBF67577 Xenopus laevis CBF67577 I 0.729
CBF67578 Xenopus laevis CBF67578 I 0.785
CBF67672 Xenopus laevis CBF67672 I 0.845
CBU92428 Xenopus laevis CBU92428 I 0.831
CBU92450 Xenopus laevis CBU92450 I 0.729
CBU92451 Xenopus laevis CBU92451 I 0.785
CBU92546 Xenopus laevis CBU92546 I 0.845
D3ZTB7_RAT Rattus norvegicus ENSRNOG00000031608 I 0.775
D3ZXA3_RAT Rattus norvegicus ENSRNOG00000038905 I 0.789
D4A1X0_RAT Rattus norvegicus ENSRNOG00000021254 I 0.712
D4A491_RAT Rattus norvegicus ENSRNOG00000029531 I 0.880
D4AD23_RAT Rattus norvegicus ENSRNOG00000025891 I 0.866
ENSACAG00000007169 Anolis carolinensis ENSACAG00000007169 I 0.901
ENSBTAG00000011195 Bos taurus ENSBTAG00000011195 I 0.000
ENSBTAG00000020849 Bos taurus ENSBTAG00000020849 I 0.000
ENSCAFG00000001973 Canis familiaris ENSCAFG00000001973 I 0.857
ENSCAFG00000003493 Canis familiaris ENSCAFG00000003493 I 0.857
ENSCAFG00000003921 Canis familiaris ENSCAFG00000003921 I 0.743
ENSCAFG00000004202 Canis familiaris ENSCAFG00000004202 I 0.871
ENSCAFG00000005308 Canis familiaris ENSCAFG00000005308 I 0.858
ENSCAFG00000006036 Canis familiaris ENSCAFG00000006036 I 0.764
ENSCAFG00000006784 Canis familiaris ENSCAFG00000006784 I 0.873
ENSCAFG00000007879 Canis familiaris ENSCAFG00000007879 I 0.894
ENSCAFG00000008301 Canis familiaris ENSCAFG00000008301 I 0.830
ENSCAFG00000008379 Canis familiaris ENSCAFG00000008379 I 0.771
ENSCAFG00000009412 Canis familiaris ENSCAFG00000009412 I 0.783
ENSCAFG00000010153 Canis familiaris ENSCAFG00000010153 I 0.901
ENSCAFG00000011035 Canis familiaris ENSCAFG00000011035 I 0.907
ENSCAFG00000013303 Canis familiaris ENSCAFG00000013303 I 0.764
ENSCAFG00000013497 Canis familiaris ENSCAFG00000013497 I 0.797
ENSCAFG00000014691 Canis familiaris ENSCAFG00000014691 I 0.792
ENSCAFG00000015319 Canis familiaris ENSCAFG00000015319 I 0.893
ENSCAFG00000017316 Canis familiaris ENSCAFG00000017316 I 0.808
ENSCAFG00000017494 Canis familiaris ENSCAFG00000017494 I 0.757
ENSCAFG00000018186 Canis familiaris ENSCAFG00000018186 I 0.864
ENSCAFG00000019104 Canis familiaris ENSCAFG00000019104 I 0.871
ENSCAFG00000019118 Canis familiaris ENSCAFG00000019118 I 0.894
ENSCAFG00000020238 Canis familiaris ENSCAFG00000020238 I 0.879
ENSCAFG00000024951 Canis familiaris ENSCAFG00000024951 I 0.865
ENSCJAG00000000095 Callithrix jacchus ENSCJAG00000000095 I 0.845
ENSCJAG00000004902 Callithrix jacchus ENSCJAG00000004902 I 0.859
ENSCJAG00000005326 Callithrix jacchus ENSCJAG00000005326 I 0.783
ENSCJAG00000008584 Callithrix jacchus ENSCJAG00000008584 I 0.755
ENSCJAG00000009723 Callithrix jacchus ENSCJAG00000009723 I 0.866
ENSCJAG00000019479 Callithrix jacchus ENSCJAG00000019479 I 0.915
ENSCJAG00000021872 Callithrix jacchus ENSCJAG00000021872 I 0.736
ENSCJAG00000031552 Callithrix jacchus ENSCJAG00000031552 I 0.901
ENSCJAG00000032417 Callithrix jacchus ENSCJAG00000032417 I 0.852
ENSCJAG00000033856 Callithrix jacchus ENSCJAG00000033856 I 0.915
ENSCPOG00000004251 Cavia porcellus ENSCPOG00000004251 I 0.797
ENSCPOG00000021077 Cavia porcellus ENSCPOG00000021077 I 0.887
ENSDNOG00000009228 Dasypus novemcinctus ENSDNOG00000009228 I 0.915
ENSEEUG00000000494 Erinaceus europaeus ENSEEUG00000000494 I 0.866
ENSEEUG00000006130 Erinaceus europaeus ENSEEUG00000006130 I 0.901
ENSFCAG00000010150 Felis catus ENSFCAG00000010150 I 0.915
ENSG00000215492 Homo sapiens ENSG00000215492 I 0.915
ENSGACG00000009435 Gasterosteus aculeatus ENSGACG00000009435 I 0.831
ENSGGOG00000025381 Gorilla gorilla ENSGGOG00000025381 I 0.901
ENSGGOG00000025446 Gorilla gorilla ENSGGOG00000025446 I 0.739
ENSLAFG00000026657 Loxodonta africana ENSLAFG00000026657 I 0.887
ENSLAFG00000029587 Loxodonta africana ENSLAFG00000029587 I 0.908
ENSLAFG00000030769 Loxodonta africana ENSLAFG00000030769 I 0.866
ENSMEUG00000001084 Macropus eugenii ENSMEUG00000001084 I 0.736
ENSMEUG00000014479 Macropus eugenii ENSMEUG00000014479 I 0.736
ENSMGAG00000007630 Meleagris gallopavo ENSMGAG00000007630 I 0.881
ENSMLUG00000000648 Myotis lucifugus ENSMLUG00000000648 I 0.915
ENSMLUG00000000788 Myotis lucifugus ENSMLUG00000000788 I 0.907
ENSMLUG00000003232 Myotis lucifugus ENSMLUG00000003232 I 0.908
ENSMMUG00000001858 Macaca mulatta ENSMMUG00000001858 I 0.797
ENSMMUG00000005750 Macaca mulatta ENSMMUG00000005750 I 0.764
ENSMMUG00000007695 Macaca mulatta ENSMMUG00000007695 I 0.838
ENSMMUG00000008337 Macaca mulatta ENSMMUG00000008337 I 0.804
ENSMMUG00000013424 Macaca mulatta ENSMMUG00000013424 I 0.766
ENSMMUG00000022448 Macaca mulatta ENSMMUG00000022448 I 0.800
ENSMODG00000023422 Monodelphis domestica ENSMODG00000023422 I 0.864
ENSMUSG00000021927 Mus musculus ENSMUSG00000021927 I 0.887
ENSOCUG00000010985 Oryctolagus cuniculus ENSOCUG00000010985 I 0.901
ENSOCUG00000013350 Oryctolagus cuniculus ENSOCUG00000013350 I 0.915
ENSOCUG00000021006 Oryctolagus cuniculus ENSOCUG00000021006 I 0.880
ENSOCUG00000021007 Oryctolagus cuniculus ENSOCUG00000021007 I 0.901
ENSOCUG00000022568 Oryctolagus cuniculus ENSOCUG00000022568 I 0.908
ENSOCUG00000022668 Oryctolagus cuniculus ENSOCUG00000022668 I 0.887
ENSOCUG00000023322 Oryctolagus cuniculus ENSOCUG00000023322 I 0.901
ENSOCUG00000023444 Oryctolagus cuniculus ENSOCUG00000023444 I 0.908
ENSOCUG00000023674 Oryctolagus cuniculus ENSOCUG00000023674 I 0.915
ENSOCUG00000028124 Oryctolagus cuniculus ENSOCUG00000028124 I 0.901
ENSOGAG00000002398 Otolemur garnettii ENSOGAG00000002398 I 0.738
ENSOGAG00000009945 Otolemur garnettii ENSOGAG00000009945 I 0.894
ENSOGAG00000017179 Otolemur garnettii ENSOGAG00000017179 I 0.764
ENSOPRG00000006107 Ochotona princeps ENSOPRG00000006107 I 0.908
ENSORLG00000008001 Oryzias latipes ENSORLG00000008001 I 0.817
ENSPPYG00000012967 Pongo pygmaeus ENSPPYG00000012967 I 0.755
ENSPPYG00000017715 Pongo pygmaeus ENSPPYG00000017715 I 0.736
ENSPPYG00000017853 Pongo pygmaeus ENSPPYG00000017853 I 0.880
ENSPVAG00000000322 Pteropus vampyrus ENSPVAG00000000322 I 0.915
ENSRNOG00000005951 Rattus norvegicus ENSRNOG00000005951 I 0.866
ENSRNOG00000033182 Rattus norvegicus ENSRNOG00000033182 I 0.880
ENSRNOG00000039436 Rattus norvegicus ENSRNOG00000039436 I 0.880
ENSSARG00000008946 Sorex araneus ENSSARG00000008946 I 0.824
ENSSSCG00000000288 Sus scrofa ENSSSCG00000000288 I 0.915
ENSSSCG00000012503 Sus scrofa ENSSSCG00000012503 I 0.000
ENSSSCG00000013557 Sus scrofa ENSSSCG00000013557 I 0.000
ENSSSCG00000013561 Sus scrofa ENSSSCG00000013561 I 0.000
ENSSSCG00000013607 Sus scrofa ENSSSCG00000013607 I 0.000
ENSSSCG00000015836 Sus scrofa ENSSSCG00000015836 I 0.729
ENSSSCG00000016710 Sus scrofa ENSSSCG00000016710 I 0.000
ENSSTOG00000006202 Spermophilus tridecemlineatus ENSSTOG00000006202 I 0.736
ENSSTOG00000009092 Spermophilus tridecemlineatus ENSSTOG00000009092 I 0.708
ENSTBEG00000008238 Tupaia belangeri ENSTBEG00000008238 I 0.915
ENSTBEG00000016272 Tupaia belangeri ENSTBEG00000016272 I 0.873
ENSTNIG00000015047 Tetraodon nigroviridis ENSTNIG00000015047 I 0.775
ENSTTRG00000004505 Tursiops truncatus ENSTTRG00000004505 I 0.915
Gm8991 Mus musculus ENSMUSG00000059179 I 0.796
HNRNPA1 Gorilla gorilla ENSGGOG00000003040 I 0.915
Hnrnpa1 Rattus norvegicus ENSRNOG00000036839 I 0.915
Hnrnpa1 Mus musculus ENSMUSG00000046434 I 0.915
HNRNPA1 Homo sapiens ENSG00000135486 D 0.915
hnrnpa1 Xenopus tropicalis ENSXETG00000021277 I 0.852
Hnrnpa1 Dipodomys ordii ENSDORG00000010628 I 0.824
HNRNPA1L2 Pan troglodytes ENSPTRG00000032520 I 0.915
HNRNPA1L2 Homo sapiens ENSG00000139675 D 0.894
HNRNPA2B1 Echinops telfairi ENSETEG00000018577 I 0.736
HNRNPA2B1 Canis familiaris ENSCAFG00000002885 I 0.736
HNRNPA2B1 Choloepus hoffmanni ENSCHOG00000013832 I 0.729
HNRNPA2B1 Pan troglodytes ENSPTRG00000019002 I 0.736
HNRNPA2B1 Tupaia belangeri ENSTBEG00000003219 I 0.000
HNRNPA2B1 Anolis carolinensis ENSACAG00000012992 I 0.729
HNRNPA2B1 Taeniopygia guttata ENSTGUG00000002869 I 0.743
hnrnpa2b1 Xenopus tropicalis ENSXETG00000012170 I 0.715
HNRNPA2B1 Vicugna pacos ENSVPAG00000010417 I 0.000
HNRNPA2B1 Tursiops truncatus ENSTTRG00000000709 I 0.736
HNRNPA2B1 Tarsius syrichta ENSTSYG00000008124 N 0.000
HNRNPA2B1 Pteropus vampyrus ENSPVAG00000006296 I 0.736
HNRNPA2B1 Dasypus novemcinctus ENSDNOG00000012928 I 0.736
Hnrnpa2b1 Rattus norvegicus ENSRNOG00000011175 I 0.736
HNRNPA2B1 Loxodonta africana ENSLAFG00000006902 I 0.736
HNRNPA2B1 Homo sapiens ENSG00000122566 D 0.736
HNRNPA2B1 Ornithorhynchus anatinus ENSOANG00000009159 I 0.736
HNRNPA2B1 Myotis lucifugus ENSMLUG00000007578 I 0.736
Hnrnpa2b1 Mus musculus ENSMUSG00000004980 I 0.736
Hnrnpa2b1 Dipodomys ordii ENSDORG00000005482 I 0.736
HNRNPA2B1 Monodelphis domestica ENSMODG00000000603 I 0.736
HNRNPA2B1 Oryctolagus cuniculus ENSOCUG00000026859 I 0.736
HNRNPA2B1 Macaca mulatta ENSMMUG00000003619 I 0.736
HNRNPA2B1 Ochotona princeps ENSOPRG00000011698 I 0.000
HNRNPA2B1 Gorilla gorilla ENSGGOG00000017072 I 0.736
HNRNPA2B1 Meleagris gallopavo ENSMGAG00000010635 I 0.736
HNRNPA3 Gorilla gorilla ENSGGOG00000006130 I 0.797
HNRNPA3 Oryctolagus cuniculus ENSOCUG00000002743 I 0.790
Hnrnpa3 Mus musculus ENSMUSG00000059005 I 0.797
HNRNPA3 Tursiops truncatus ENSTTRG00000014225 I 0.797
HNRNPA3 Monodelphis domestica ENSMODG00000019803 I 0.797
HNRNPA3 Dasypus novemcinctus ENSDNOG00000019022 I 0.797
HNRNPA3 Sus scrofa ENSSSCG00000015988 I 0.797
HNRNPA3 Homo sapiens ENSG00000170144 I 0.797
HNRNPA3 Felis catus ENSFCAG00000012146 I 0.796
hnrnpa3 Xenopus tropicalis ENSXETG00000001806 I 0.803
HNRNPA3 Pan troglodytes ENSPTRG00000012676 I 0.797
HNRNPA3 Oryzias latipes ENSORLG00000017561 I 0.736
HNRNPA3 Anolis carolinensis ENSACAG00000012234 I 0.803
HNRNPA3 Meleagris gallopavo ENSMGAG00000009565 I 0.796
HNRNPA3 Pteropus vampyrus ENSPVAG00000010380 I 0.797
HNRNPA3 Myotis lucifugus ENSMLUG00000003906 I 0.797
HNRNPA3 Macropus eugenii ENSMEUG00000013622 I 0.797
hnrnpa3 Danio rerio ENSDARG00000059351 I 0.746
HNRNPA3 Cavia porcellus ENSCPOG00000011301 I 0.797
HNRNPA3 Taeniopygia guttata ENSTGUG00000008996 I 0.796
HNRPA3 Gallus gallus ENSGALG00000009250 I 0.796
LOC100054206 Equus caballus ENSECAG00000006699 I 0.921
LOC100066794 Equus caballus ENSECAG00000023237 I 0.796
LOC100068539 Equus caballus ENSECAG00000000782 I 0.736
LOC100360986 Rattus norvegicus ENSRNOG00000001556 I 0.797
LOC100397230 Callithrix jacchus ENSCJAG00000004031 I 0.908
LOC100397230 Callithrix jacchus ENSCJAG00000014791 I 0.866
LOC100397230 Callithrix jacchus ENSCJAG00000018864 I 0.915
LOC100401647 Callithrix jacchus ENSCJAG00000007908 I 0.736
LOC100409067 Callithrix jacchus ENSCJAG00000003245 I 0.894
LOC100410389 Callithrix jacchus ENSCJAG00000023392 I 0.887
LOC100411573 Callithrix jacchus ENSCJAG00000023383 I 0.797
LOC100413454 Callithrix jacchus ENSCJAG00000009030 I 0.930
LOC516616 Bos taurus ENSBTAG00000002284 I 0.000
LOC538435 Bos taurus ENSBTAG00000038680 I 0.000
LOC710473 Macaca mulatta ENSMMUG00000007887 I 0.908
LOC710473 Macaca mulatta ENSMMUG00000029402 I 0.908
LOC710473 Macaca mulatta ENSMMUG00000012989 I 0.915
LOC710473 Macaca mulatta ENSMMUG00000007928 I 0.894
LOC781499 Bos taurus ENSBTAG00000021580 I 0.797
LOC785445 Bos taurus ENSBTAG00000025621 I 0.866
P17130 Xenopus laevis P17130 I 0.831
P51968 Xenopus laevis P51968 I 0.796
P51989 Xenopus laevis P51989 I 0.729
P51990 Xenopus laevis P51990 I 0.715
P51992 Xenopus laevis P51992 I 0.785
Q1KKU4_FUGRU Takifugu rubripes ENSTRUG00000002190 I 0.789
Q5ZME1_CHICK Gallus gallus ENSGALG00000011036 I 0.736
Q6DTK6_HORSE Equus caballus ENSECAG00000008676 I 0.915
ROA1_BOVIN Bos taurus ENSBTAG00000001553 I 0.915
ROA1_MACMU Macaca mulatta ENSMMUG00000031613 I 0.894
ROA1_PANTR Pan troglodytes ENSPTRG00000005035 I 0.915
ROA1_PANTR Pan troglodytes ENSPTRG00000028756 I 0.915
ROA1_PANTR Pan troglodytes ENSPTRG00000031363 I 0.915
ROA2_BOVIN Bos taurus ENSBTAG00000005726 I 0.736
ROA3_RAT Rattus norvegicus ENSRNOG00000027001 I 0.797
XM_534786.2 Canis familiaris ENSCAFG00000006580 I 0.915
XM_844664.1 Canis familiaris ENSCAFG00000000687 I 0.795
XM_852631.1 Canis familiaris ENSCAFG00000023680 I 0.880
XM_854536.1 Canis familiaris ENSCAFG00000005046 I 0.873
XM_855847.1 Canis familiaris ENSCAFG00000006327 I 0.859
XR_011984.1 Macaca mulatta ENSMMUG00000011640 I 0.776