AGAP003914 (Anopheles gambiae)
PUF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00806 (PUF) IPR001313 AGAP003914 T24002_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
pum
M285_0.6 		Drosophila melanogaster Sequence logo not available HHUGUAHAUAHDHWDD RIP-chip
Cook et al.(2011)
323_16537387 		0.888
pum
M045_0.6 		Drosophila melanogaster UGUAHAK RNAcompete
Ray et al.(2013)
RNCMPT00046 		0.888
pum
M100_0.6 		Drosophila melanogaster UGUAMAK RNAcompete
Ray et al.(2013)
RNCMPT00104 		0.885
pum
M099_0.6 		Drosophila melanogaster UGUAMRK RNAcompete
Ray et al.(2013)
RNCMPT00103 		0.885
pum
M098_0.6 		Drosophila melanogaster UGUAYAK RNAcompete
Ray et al.(2013)
RNCMPT00102 		0.885
pum
M097_0.6 		Drosophila melanogaster UGUAMAK RNAcompete
Ray et al.(2013)
RNCMPT00101 		0.885
pum
M101_0.6 		Drosophila melanogaster UGUAWDU RNAcompete
Ray et al.(2013)
RNCMPT00105 		0.885
PUM2
M284_0.6 		Homo sapiens Sequence logo not available GNNNNNNNNNNNUGUA yeast three-hybrid s
Cook et al.(2011)
320_15607425 		0.805
PUM2
M280_0.6 		Homo sapiens Sequence logo not available UGUANAUA PAR-clip
Cook et al.(2011)
278_20371350 		0.805
Pum2
M287_0.6 		Mus musculus UGUANAUARNNNNBBBBSCC SELEX
Cook et al.(2011)
330_11780640 		0.805
PUM2
M249_0.6 		Homo sapiens Sequence logo not available UGUAHAUA RIP-chip
Cook et al.(2011)
1147_18776931 		0.805
Pum2
M286_0.6 		Mus musculus UGUA SELEX
Cook et al.(2011)
329_11780640 		0.805
PUM1
M283_0.6 		Homo sapiens Sequence logo not available UGUAHAUA RIP-chip
Cook et al.(2011)
309_18776931 		0.773
PUM1
M255_0.6 		Homo sapiens Sequence logo not available UGUAHAUA RIP-chip
Cook et al.(2011)
1182_18411299 		0.773
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
AGAP003914-PA PUF 424 458
AGAP003914-PA PUF 460 493
AGAP003914-PA PUF 496 530
AGAP003914-PA PUF 532 566
AGAP003914-PA PUF 568 602
AGAP003914-PA PUF 604 638
AGAP003914-PA PUF 640 674
AGAP003914-PA PUF 682 714
AGAP003914-PB PUF 933 967
AGAP003914-PB PUF 969 1002
AGAP003914-PB PUF 1005 1039
AGAP003914-PB PUF 1041 1075
AGAP003914-PB PUF 1077 1111
AGAP003914-PB PUF 1113 1147
AGAP003914-PB PUF 1149 1183
AGAP003914-PB PUF 1191 1223
AGAP003914-PC PUF 424 458
AGAP003914-PC PUF 460 493
AGAP003914-PC PUF 496 530
AGAP003914-PC PUF 532 566
AGAP003914-PC PUF 568 602
AGAP003914-PC PUF 604 638
AGAP003914-PC PUF 640 674
AGAP003914-PC PUF 682 714

Links

Other PUF family RBPs
Other Anopheles gambiae RBPs

90 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
YGR250C Saccharomyces cerevisiae YGR250C N 0.000
Skud_Contig1999.8 Saccharomyces kudriavzevii Skud_Contig1999.8 N 0.000
9299_YGR250C Saccharomyces paradoxus 9299_YGR250C N 0.000