XM_854536.1 (Canis familiaris)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSCAFG00000005046 T35017_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
HNRNPA1
M312_0.6 		Homo sapiens Sequence logo not available UAGGGW RIP-chip
Cook et al.(2011)
560_17925491 		0.957
HNRNPA1
M271_0.6 		Homo sapiens UAGGGW SELEX
Cook et al.(2011)
23_7510636 		0.957
HNRNPA1
M022_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00022 		0.957
HNRNPA1L2
M023_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00023 		0.936
HNRNPA2B1
M024_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00024 		0.786
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSCAFP00000007515 RRM 16 85
ENSCAFP00000007515 RRM 107 176

Links

Other RRM family RBPs
Other Canis familiaris RBPs

318 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Ame_R011792 Ailuropoda melanoleuca Ame_R011792 I 0.957
Ame_R000626 Ailuropoda melanoleuca Ame_R000626 I 0.731
ENSACAG00000007169 Anolis carolinensis ENSACAG00000007169 I 0.943
HNRNPA3 Anolis carolinensis ENSACAG00000012234 I 0.836
HNRNPA2B1 Anolis carolinensis ENSACAG00000012992 I 0.724
LOC538435 Bos taurus ENSBTAG00000038680 I 0.000
LOC785445 Bos taurus ENSBTAG00000025621 I 0.901
LOC781499 Bos taurus ENSBTAG00000021580 I 0.830
ENSBTAG00000020849 Bos taurus ENSBTAG00000020849 I 0.000
ENSBTAG00000011195 Bos taurus ENSBTAG00000011195 I 0.000
ROA2_BOVIN Bos taurus ENSBTAG00000005726 I 0.731
ROA1_BOVIN Bos taurus ENSBTAG00000001553 I 0.957
LOC516616 Bos taurus ENSBTAG00000002284 I 0.000
ENSCJAG00000005326 Callithrix jacchus ENSCJAG00000005326 I 0.804
ENSCJAG00000004902 Callithrix jacchus ENSCJAG00000004902 I 0.901
LOC100397230 Callithrix jacchus ENSCJAG00000004031 I 0.950
LOC100409067 Callithrix jacchus ENSCJAG00000003245 I 0.943
ENSCJAG00000001353 Callithrix jacchus ENSCJAG00000001353 I 0.873
ENSCJAG00000000095 Callithrix jacchus ENSCJAG00000000095 I 0.887
ENSCJAG00000019479 Callithrix jacchus ENSCJAG00000019479 I 0.957
ENSCJAG00000008584 Callithrix jacchus ENSCJAG00000008584 I 0.787
LOC100413454 Callithrix jacchus ENSCJAG00000009030 I 0.936
ENSCJAG00000033856 Callithrix jacchus ENSCJAG00000033856 I 0.957
ENSCJAG00000032417 Callithrix jacchus ENSCJAG00000032417 I 0.907
ENSCJAG00000031552 Callithrix jacchus ENSCJAG00000031552 I 0.936
LOC100410389 Callithrix jacchus ENSCJAG00000023392 I 0.929
ENSCJAG00000021872 Callithrix jacchus ENSCJAG00000021872 I 0.731
LOC100397230 Callithrix jacchus ENSCJAG00000018864 I 0.957
LOC100397230 Callithrix jacchus ENSCJAG00000014791 I 0.887
ENSCJAG00000009723 Callithrix jacchus ENSCJAG00000009723 I 0.893
LOC100401647 Callithrix jacchus ENSCJAG00000007908 I 0.731
LOC100411573 Callithrix jacchus ENSCJAG00000023383 I 0.830
ENSCAFG00000014691 Canis familiaris ENSCAFG00000014691 I 0.814
ENSCAFG00000006784 Canis familiaris ENSCAFG00000006784 I 0.950
XM_534786.2 Canis familiaris ENSCAFG00000006580 I 0.957
XM_855847.1 Canis familiaris ENSCAFG00000006327 I 0.900
ENSCAFG00000006036 Canis familiaris ENSCAFG00000006036 I 0.792
ENSCAFG00000005308 Canis familiaris ENSCAFG00000005308 I 0.832
ENSCAFG00000004202 Canis familiaris ENSCAFG00000004202 I 0.859
ENSCAFG00000003921 Canis familiaris ENSCAFG00000003921 I 0.738
ENSCAFG00000015319 Canis familiaris ENSCAFG00000015319 I 0.915
ENSCAFG00000003493 Canis familiaris ENSCAFG00000003493 I 0.845
HNRNPA2B1 Canis familiaris ENSCAFG00000002885 I 0.731
ENSCAFG00000001973 Canis familiaris ENSCAFG00000001973 I 0.852
XM_844664.1 Canis familiaris ENSCAFG00000000687 I 0.782
ENSCAFG00000007879 Canis familiaris ENSCAFG00000007879 I 0.860
ENSCAFG00000008301 Canis familiaris ENSCAFG00000008301 I 0.818
ENSCAFG00000013497 Canis familiaris ENSCAFG00000013497 I 0.830
ENSCAFG00000017316 Canis familiaris ENSCAFG00000017316 I 0.816
ENSCAFG00000017494 Canis familiaris ENSCAFG00000017494 I 0.759
ENSCAFG00000018186 Canis familiaris ENSCAFG00000018186 I 0.838
ENSCAFG00000019104 Canis familiaris ENSCAFG00000019104 I 0.838
ENSCAFG00000019118 Canis familiaris ENSCAFG00000019118 I 0.881
ENSCAFG00000020238 Canis familiaris ENSCAFG00000020238 I 0.908
XM_852631.1 Canis familiaris ENSCAFG00000023680 I 0.921
ENSCAFG00000008379 Canis familiaris ENSCAFG00000008379 I 0.786
ENSCAFG00000009412 Canis familiaris ENSCAFG00000009412 I 0.792
ENSCAFG00000010153 Canis familiaris ENSCAFG00000010153 I 0.943
ENSCAFG00000013303 Canis familiaris ENSCAFG00000013303 I 0.772
ENSCAFG00000024951 Canis familiaris ENSCAFG00000024951 I 0.853
ENSCAFG00000011035 Canis familiaris ENSCAFG00000011035 I 0.894
ENSCPOG00000004251 Cavia porcellus ENSCPOG00000004251 I 0.830
HNRNPA3 Cavia porcellus ENSCPOG00000011301 I 0.830
ENSCPOG00000021077 Cavia porcellus ENSCPOG00000021077 I 0.929
HNRNPA2B1 Choloepus hoffmanni ENSCHOG00000013832 I 0.724
hnrnpa3 Danio rerio ENSDARG00000059351 I 0.779
ENSDNOG00000009228 Dasypus novemcinctus ENSDNOG00000009228 I 0.957
HNRNPA2B1 Dasypus novemcinctus ENSDNOG00000012928 I 0.731
HNRNPA3 Dasypus novemcinctus ENSDNOG00000019022 I 0.830
Hnrnpa2b1 Dipodomys ordii ENSDORG00000005482 I 0.731
Hnrnpa1 Dipodomys ordii ENSDORG00000010628 I 0.886
HNRNPA2B1 Echinops telfairi ENSETEG00000018577 I 0.731
LOC100066794 Equus caballus ENSECAG00000023237 I 0.829
LOC100054206 Equus caballus ENSECAG00000006699 I 0.866
LOC100068539 Equus caballus ENSECAG00000000782 I 0.731
Q6DTK6_HORSE Equus caballus ENSECAG00000008676 I 0.957
ENSEEUG00000000494 Erinaceus europaeus ENSEEUG00000000494 I 0.921
ENSEEUG00000006130 Erinaceus europaeus ENSEEUG00000006130 I 0.943
HNRNPA3 Felis catus ENSFCAG00000012146 I 0.829
ENSFCAG00000010150 Felis catus ENSFCAG00000010150 I 0.957
Q5ZME1_CHICK Gallus gallus ENSGALG00000011036 I 0.731
HNRPA3 Gallus gallus ENSGALG00000009250 I 0.829
ENSGACG00000009435 Gasterosteus aculeatus ENSGACG00000009435 I 0.864
ENSGGOG00000025381 Gorilla gorilla ENSGGOG00000025381 I 0.943
HNRNPA1 Gorilla gorilla ENSGGOG00000003040 I 0.957
ENSGGOG00000025446 Gorilla gorilla ENSGGOG00000025446 I 0.764
HNRNPA2B1 Gorilla gorilla ENSGGOG00000017072 I 0.731
HNRNPA3 Gorilla gorilla ENSGGOG00000006130 I 0.830
HNRNPA3 Homo sapiens ENSG00000170144 I 0.830
HNRNPA2B1 Homo sapiens ENSG00000122566 D 0.731
HNRNPA1 Homo sapiens ENSG00000135486 D 0.957
ENSG00000215492 Homo sapiens ENSG00000215492 I 0.957
HNRNPA1L2 Homo sapiens ENSG00000139675 D 0.936
HNRNPA2B1 Loxodonta africana ENSLAFG00000006902 I 0.731
ENSLAFG00000030769 Loxodonta africana ENSLAFG00000030769 I 0.921
ENSLAFG00000029587 Loxodonta africana ENSLAFG00000029587 I 0.950
ENSLAFG00000026657 Loxodonta africana ENSLAFG00000026657 I 0.929
ENSMMUG00000007695 Macaca mulatta ENSMMUG00000007695 I 0.872
LOC710473 Macaca mulatta ENSMMUG00000007887 I 0.964
LOC710473 Macaca mulatta ENSMMUG00000007928 I 0.936
ENSMMUG00000008337 Macaca mulatta ENSMMUG00000008337 I 0.779
XR_011984.1 Macaca mulatta ENSMMUG00000011640 I 0.778
LOC710473 Macaca mulatta ENSMMUG00000012989 I 0.957
ENSMMUG00000013424 Macaca mulatta ENSMMUG00000013424 I 0.779
ENSMMUG00000022448 Macaca mulatta ENSMMUG00000022448 I 0.795
LOC710473 Macaca mulatta ENSMMUG00000029402 I 0.950
ROA1_MACMU Macaca mulatta ENSMMUG00000031613 I 0.936
ENSMMUG00000005750 Macaca mulatta ENSMMUG00000005750 I 0.752
HNRNPA2B1 Macaca mulatta ENSMMUG00000003619 I 0.731
ENSMMUG00000001858 Macaca mulatta ENSMMUG00000001858 I 0.830
ENSMEUG00000001084 Macropus eugenii ENSMEUG00000001084 I 0.731
HNRNPA3 Macropus eugenii ENSMEUG00000013622 I 0.830
ENSMEUG00000014479 Macropus eugenii ENSMEUG00000014479 I 0.731
ENSMGAG00000007630 Meleagris gallopavo ENSMGAG00000007630 I 0.915
HNRNPA3 Meleagris gallopavo ENSMGAG00000009565 I 0.829
HNRNPA2B1 Meleagris gallopavo ENSMGAG00000010635 I 0.731
HNRNPA2B1 Monodelphis domestica ENSMODG00000000603 I 0.731
HNRNPA3 Monodelphis domestica ENSMODG00000019803 I 0.830
ENSMODG00000023422 Monodelphis domestica ENSMODG00000023422 I 0.831
Hnrnpa1 Mus musculus ENSMUSG00000046434 I 0.957
Hnrnpa3 Mus musculus ENSMUSG00000059005 I 0.830
Gm8991 Mus musculus ENSMUSG00000059179 I 0.829
ENSMUSG00000021927 Mus musculus ENSMUSG00000021927 I 0.936
Hnrnpa2b1 Mus musculus ENSMUSG00000004980 I 0.731
ENSMLUG00000000648 Myotis lucifugus ENSMLUG00000000648 I 0.957
ENSMLUG00000000788 Myotis lucifugus ENSMLUG00000000788 I 0.866
ENSMLUG00000003232 Myotis lucifugus ENSMLUG00000003232 I 0.943
HNRNPA3 Myotis lucifugus ENSMLUG00000003906 I 0.830
HNRNPA2B1 Myotis lucifugus ENSMLUG00000007578 I 0.731
HNRNPA2B1 Ochotona princeps ENSOPRG00000011698 I 0.000
ENSOPRG00000006107 Ochotona princeps ENSOPRG00000006107 I 0.950
HNRNPA2B1 Ornithorhynchus anatinus ENSOANG00000009159 I 0.731
ENSOCUG00000010985 Oryctolagus cuniculus ENSOCUG00000010985 I 0.943
ENSOCUG00000028124 Oryctolagus cuniculus ENSOCUG00000028124 I 0.943
HNRNPA2B1 Oryctolagus cuniculus ENSOCUG00000026859 I 0.731
ENSOCUG00000023674 Oryctolagus cuniculus ENSOCUG00000023674 I 0.957
ENSOCUG00000023444 Oryctolagus cuniculus ENSOCUG00000023444 I 0.950
ENSOCUG00000023322 Oryctolagus cuniculus ENSOCUG00000023322 I 0.943
ENSOCUG00000013350 Oryctolagus cuniculus ENSOCUG00000013350 I 0.957
HNRNPA3 Oryctolagus cuniculus ENSOCUG00000002743 I 0.823
ENSOCUG00000021006 Oryctolagus cuniculus ENSOCUG00000021006 I 0.921
ENSOCUG00000021007 Oryctolagus cuniculus ENSOCUG00000021007 I 0.943
ENSOCUG00000022568 Oryctolagus cuniculus ENSOCUG00000022568 I 0.950
ENSOCUG00000022668 Oryctolagus cuniculus ENSOCUG00000022668 I 0.929
ENSORLG00000008001 Oryzias latipes ENSORLG00000008001 I 0.850
HNRNPA3 Oryzias latipes ENSORLG00000017561 I 0.775
ENSOGAG00000017179 Otolemur garnettii ENSOGAG00000017179 I 0.772
ENSOGAG00000002398 Otolemur garnettii ENSOGAG00000002398 I 0.740
ENSOGAG00000009945 Otolemur garnettii ENSOGAG00000009945 I 0.936
HNRNPA1L2 Pan troglodytes ENSPTRG00000032520 I 0.957
ROA1_PANTR Pan troglodytes ENSPTRG00000031363 I 0.957
ROA1_PANTR Pan troglodytes ENSPTRG00000028756 I 0.957
HNRNPA2B1 Pan troglodytes ENSPTRG00000019002 I 0.731
HNRNPA3 Pan troglodytes ENSPTRG00000012676 I 0.830
ROA1_PANTR Pan troglodytes ENSPTRG00000005035 I 0.957
ENSPPYG00000012967 Pongo pygmaeus ENSPPYG00000012967 I 0.801
ENSPPYG00000017715 Pongo pygmaeus ENSPPYG00000017715 I 0.731
ENSPPYG00000017853 Pongo pygmaeus ENSPPYG00000017853 I 0.914
HNRNPA3 Pteropus vampyrus ENSPVAG00000010380 I 0.830
ENSPVAG00000000322 Pteropus vampyrus ENSPVAG00000000322 I 0.957
ENSRNOG00000039436 Rattus norvegicus ENSRNOG00000039436 I 0.921
D3ZXA3_RAT Rattus norvegicus ENSRNOG00000038905 I 0.821
Hnrnpa1 Rattus norvegicus ENSRNOG00000036839 I 0.957
ENSRNOG00000033182 Rattus norvegicus ENSRNOG00000033182 I 0.901
D3ZTB7_RAT Rattus norvegicus ENSRNOG00000031608 I 0.821
D4A491_RAT Rattus norvegicus ENSRNOG00000029531 I 0.921
LOC100360986 Rattus norvegicus ENSRNOG00000001556 I 0.830
ENSRNOG00000005951 Rattus norvegicus ENSRNOG00000005951 I 0.900
Hnrnpa2b1 Rattus norvegicus ENSRNOG00000011175 I 0.731
D4A1X0_RAT Rattus norvegicus ENSRNOG00000021254 I 0.707
D4AD23_RAT Rattus norvegicus ENSRNOG00000025891 I 0.879
ROA3_RAT Rattus norvegicus ENSRNOG00000027001 I 0.830
ENSSARG00000008946 Sorex araneus ENSSARG00000008946 I 0.886
ENSSTOG00000006202 Spermophilus tridecemlineatus ENSSTOG00000006202 I 0.731
ENSSTOG00000009092 Spermophilus tridecemlineatus ENSSTOG00000009092 I 0.710
ENSSSCG00000012503 Sus scrofa ENSSSCG00000012503 I 0.000
ENSSSCG00000016710 Sus scrofa ENSSSCG00000016710 I 0.000
HNRNPA3 Sus scrofa ENSSSCG00000015988 I 0.830
ENSSSCG00000015836 Sus scrofa ENSSSCG00000015836 I 0.717
ENSSSCG00000000288 Sus scrofa ENSSSCG00000000288 I 0.957
ENSSSCG00000013557 Sus scrofa ENSSSCG00000013557 I 0.000
ENSSSCG00000013561 Sus scrofa ENSSSCG00000013561 I 0.000
ENSSSCG00000013607 Sus scrofa ENSSSCG00000013607 I 0.000
HNRNPA2B1 Taeniopygia guttata ENSTGUG00000002869 I 0.738
HNRNPA3 Taeniopygia guttata ENSTGUG00000008996 I 0.829
Q1KKU4_FUGRU Takifugu rubripes ENSTRUG00000002190 I 0.821
HNRNPA2B1 Tarsius syrichta ENSTSYG00000008124 N 0.000
ENSTNIG00000015047 Tetraodon nigroviridis ENSTNIG00000015047 I 0.807
HNRNPA2B1 Tupaia belangeri ENSTBEG00000003219 I 0.000
ENSTBEG00000008238 Tupaia belangeri ENSTBEG00000008238 I 0.957
ENSTBEG00000016272 Tupaia belangeri ENSTBEG00000016272 I 0.908
HNRNPA2B1 Tursiops truncatus ENSTTRG00000000709 I 0.731
ENSTTRG00000004505 Tursiops truncatus ENSTTRG00000004505 I 0.957
HNRNPA3 Tursiops truncatus ENSTTRG00000014225 I 0.830
HNRNPA2B1 Vicugna pacos ENSVPAG00000010417 I 0.000
CBU92428 Xenopus laevis CBU92428 I 0.871
CBF67672 Xenopus laevis CBF67672 I 0.879
CBF67578 Xenopus laevis CBF67578 I 0.817
CBF67577 Xenopus laevis CBF67577 I 0.724
CBF67555 Xenopus laevis CBF67555 I 0.871
CBU92450 Xenopus laevis CBU92450 I 0.724
CBU92451 Xenopus laevis CBU92451 I 0.817
CBU92546 Xenopus laevis CBU92546 I 0.879
P17130 Xenopus laevis P17130 I 0.871
P51968 Xenopus laevis P51968 I 0.829
P51989 Xenopus laevis P51989 I 0.724
P51990 Xenopus laevis P51990 I 0.710
AAI69881 Xenopus laevis AAI69881 I 0.817
AAI06633 Xenopus laevis AAI06633 I 0.710
AAH72090 Xenopus laevis AAH72090 I 0.879
P51992 Xenopus laevis P51992 I 0.817
AAA49741 Xenopus laevis AAA49741 I 0.871
AAA49742 Xenopus laevis AAA49742 I 0.871
AAA49948 Xenopus laevis AAA49948 I 0.724
AAA49949 Xenopus laevis AAA49949 I 0.829
AAA49950 Xenopus laevis AAA49950 I 0.817
AAB59951 Xenopus laevis AAB59951 I 0.710
AAH43750 Xenopus laevis AAH43750 I 0.710
AAH45260 Xenopus laevis AAH45260 I 0.879
AAH46692 Xenopus laevis AAH46692 I 0.724
hnrnpa1 Xenopus tropicalis ENSXETG00000021277 I 0.886
hnrnpa3 Xenopus tropicalis ENSXETG00000001806 I 0.836
hnrnpa2b1 Xenopus tropicalis ENSXETG00000012170 I 0.710