LOC100401647 (Callithrix jacchus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSCJAG00000007908 T35543_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
HNRNPA2B1
M024_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00024 		1.000
HNRNPA1
M312_0.6 		Homo sapiens Sequence logo not available UAGGGW RIP-chip
Cook et al.(2011)
560_17925491 		0.814
HNRNPA1
M271_0.6 		Homo sapiens UAGGGW SELEX
Cook et al.(2011)
23_7510636 		0.814
HNRNPA1
M022_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00022 		0.814
HNRNPA1L2
M023_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00023 		0.793
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSCJAP00000014695 RRM 23 92
ENSCJAP00000014695 RRM 114 183
ENSCJAP00000014698 RRM 11 80
ENSCJAP00000014698 RRM 102 171
ENSCJAP00000045636 RRM 11 80
ENSCJAP00000045636 RRM 102 171
ENSCJAP00000046802 RRM 23 92
ENSCJAP00000046802 RRM 114 183

Links

Other RRM family RBPs
Other Callithrix jacchus RBPs

225 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Ame_R018030 Ailuropoda melanoleuca Ame_R018030 I 0.000
Ame_R015370 Ailuropoda melanoleuca Ame_R015370 I 0.000
Ame_R011792 Ailuropoda melanoleuca Ame_R011792 I 0.752
ENSACAG00000007169 Anolis carolinensis ENSACAG00000007169 I 0.766
HNRNPA3 Anolis carolinensis ENSACAG00000012234 I 0.745
LOC781499 Bos taurus ENSBTAG00000021580 I 0.733
LOC785445 Bos taurus ENSBTAG00000025621 I 0.731
ENSBTAG00000009937 Bos taurus ENSBTAG00000009937 I 0.000
ROA1_BOVIN Bos taurus ENSBTAG00000001553 I 0.752
ENSCJAG00000006928 Callithrix jacchus ENSCJAG00000006928 I 0.000
ENSCJAG00000007250 Callithrix jacchus ENSCJAG00000007250 I 0.000
ENSCJAG00000007634 Callithrix jacchus ENSCJAG00000007634 I 0.000
ENSCJAG00000007639 Callithrix jacchus ENSCJAG00000007639 I 0.000
ENSCJAG00000008584 Callithrix jacchus ENSCJAG00000008584 I 0.703
LOC100413454 Callithrix jacchus ENSCJAG00000009030 I 0.738
ENSCJAG00000005407 Callithrix jacchus ENSCJAG00000005407 I 0.000
ENSCJAG00000005326 Callithrix jacchus ENSCJAG00000005326 I 0.700
ENSCJAG00000004902 Callithrix jacchus ENSCJAG00000004902 I 0.703
LOC100397230 Callithrix jacchus ENSCJAG00000004031 I 0.745
LOC100409067 Callithrix jacchus ENSCJAG00000003245 I 0.738
ENSCJAG00000001737 Callithrix jacchus ENSCJAG00000001737 I 0.000
ENSCJAG00000001353 Callithrix jacchus ENSCJAG00000001353 I 0.736
ENSCJAG00000001302 Callithrix jacchus ENSCJAG00000001302 I 0.000
ENSCJAG00000000095 Callithrix jacchus ENSCJAG00000000095 I 0.703
ENSCJAG00000009723 Callithrix jacchus ENSCJAG00000009723 I 0.717
ENSCJAG00000010169 Callithrix jacchus ENSCJAG00000010169 I 0.000
LOC100397230 Callithrix jacchus ENSCJAG00000014791 I 0.703
ENSCJAG00000035202 Callithrix jacchus ENSCJAG00000035202 I 0.000
ENSCJAG00000033856 Callithrix jacchus ENSCJAG00000033856 I 0.752
ENSCJAG00000033784 Callithrix jacchus ENSCJAG00000033784 I 0.000
ENSCJAG00000032970 Callithrix jacchus ENSCJAG00000032970 I 0.000
ENSCJAG00000032417 Callithrix jacchus ENSCJAG00000032417 I 0.731
ENSCJAG00000031552 Callithrix jacchus ENSCJAG00000031552 I 0.731
LOC100410389 Callithrix jacchus ENSCJAG00000023392 I 0.724
LOC100411573 Callithrix jacchus ENSCJAG00000023383 I 0.733
ENSCJAG00000020672 Callithrix jacchus ENSCJAG00000020672 I 0.000
ENSCJAG00000015222 Callithrix jacchus ENSCJAG00000015222 I 0.000
ENSCJAG00000016375 Callithrix jacchus ENSCJAG00000016375 I 0.000
ENSCJAG00000017130 Callithrix jacchus ENSCJAG00000017130 I 0.000
ENSCJAG00000019479 Callithrix jacchus ENSCJAG00000019479 I 0.752
LOC100397230 Callithrix jacchus ENSCJAG00000018864 I 0.752
ENSCAFG00000006036 Canis familiaris ENSCAFG00000006036 I 0.721
ENSCAFG00000010153 Canis familiaris ENSCAFG00000010153 I 0.738
ENSCAFG00000025274 Canis familiaris ENSCAFG00000025274 I 0.000
ENSCAFG00000024951 Canis familiaris ENSCAFG00000024951 I 0.717
ENSCAFG00000024824 Canis familiaris ENSCAFG00000024824 I 0.000
ENSCAFG00000024812 Canis familiaris ENSCAFG00000024812 I 0.000
XM_852631.1 Canis familiaris ENSCAFG00000023680 I 0.738
ENSCAFG00000001973 Canis familiaris ENSCAFG00000001973 I 0.701
ENSCAFG00000007198 Canis familiaris ENSCAFG00000007198 I 0.000
ENSCAFG00000006784 Canis familiaris ENSCAFG00000006784 I 0.724
ENSCAFG00000006663 Canis familiaris ENSCAFG00000006663 I 0.000
XP_541811.1 Canis familiaris ENSCAFG00000006586 I 0.000
XM_534786.2 Canis familiaris ENSCAFG00000006580 I 0.752
XM_855847.1 Canis familiaris ENSCAFG00000006327 I 0.717
ENSCAFG00000005308 Canis familiaris ENSCAFG00000005308 I 0.703
ENSCAFG00000005207 Canis familiaris ENSCAFG00000005207 I 0.000
ENSCAFG00000005164 Canis familiaris ENSCAFG00000005164 I 0.000
XM_854536.1 Canis familiaris ENSCAFG00000005046 I 0.731
ENSCAFG00000004202 Canis familiaris ENSCAFG00000004202 I 0.722
ENSCAFG00000003493 Canis familiaris ENSCAFG00000003493 I 0.708
ENSCAFG00000003418 Canis familiaris ENSCAFG00000003418 I 0.000
XM_543834.2 Canis familiaris ENSCAFG00000002157 I 0.000
ENSCAFG00000002059 Canis familiaris ENSCAFG00000002059 I 0.000
XM_844664.1 Canis familiaris ENSCAFG00000000687 I 0.732
ENSCAFG00000000746 Canis familiaris ENSCAFG00000000746 I 0.000
ENSCAFG00000007879 Canis familiaris ENSCAFG00000007879 I 0.710
ENSCAFG00000007918 Canis familiaris ENSCAFG00000007918 I 0.000
ENSCAFG00000008301 Canis familiaris ENSCAFG00000008301 I 0.717
ENSCAFG00000020238 Canis familiaris ENSCAFG00000020238 I 0.708
ENSCAFG00000023056 Canis familiaris ENSCAFG00000023056 I 0.000
ENSCAFG00000019104 Canis familiaris ENSCAFG00000019104 I 0.708
ENSCAFG00000018456 Canis familiaris ENSCAFG00000018456 I 0.000
ENSCAFG00000018186 Canis familiaris ENSCAFG00000018186 I 0.708
ENSCAFG00000017494 Canis familiaris ENSCAFG00000017494 I 0.700
ENSCAFG00000017316 Canis familiaris ENSCAFG00000017316 I 0.754
XP_848548.1 Canis familiaris ENSCAFG00000016313 I 0.000
ENSCAFG00000015319 Canis familiaris ENSCAFG00000015319 I 0.743
ENSCAFG00000014691 Canis familiaris ENSCAFG00000014691 I 0.729
ENSCAFG00000014094 Canis familiaris ENSCAFG00000014094 I 0.000
ENSCAFG00000013497 Canis familiaris ENSCAFG00000013497 I 0.733
ENSCAFG00000013303 Canis familiaris ENSCAFG00000013303 I 0.729
ENSCAFG00000011035 Canis familiaris ENSCAFG00000011035 I 0.729
ENSCAFG00000009606 Canis familiaris ENSCAFG00000009606 I 0.000
ENSCAFG00000009412 Canis familiaris ENSCAFG00000009412 I 0.702
ENSCAFG00000008379 Canis familiaris ENSCAFG00000008379 I 0.714
ENSCAFG00000019118 Canis familiaris ENSCAFG00000019118 I 0.715
ENSCPOG00000021077 Cavia porcellus ENSCPOG00000021077 I 0.731
HNRNPA3 Cavia porcellus ENSCPOG00000011301 I 0.733
ENSCPOG00000004251 Cavia porcellus ENSCPOG00000004251 I 0.733
zgc:66127 Danio rerio ENSDARG00000011020 I 0.000
hnrnpa3 Danio rerio ENSDARG00000059351 I 0.738
hnrnpa1 Danio rerio ENSDARG00000036675 I 0.000
HNRNPA3 Dasypus novemcinctus ENSDNOG00000019022 I 0.733
ENSDNOG00000009228 Dasypus novemcinctus ENSDNOG00000009228 I 0.752
Hnrnpa1 Dipodomys ordii ENSDORG00000010628 I 0.706
ENSETEG00000015332 Echinops telfairi ENSETEG00000015332 I 0.000
ENSETEG00000001872 Echinops telfairi ENSETEG00000001872 I 0.000
LOC100066794 Equus caballus ENSECAG00000023237 I 0.731
LOC100054206 Equus caballus ENSECAG00000006699 I 0.729
Q6DTK6_HORSE Equus caballus ENSECAG00000008676 I 0.752
ENSEEUG00000011837 Erinaceus europaeus ENSEEUG00000011837 I 0.000
ENSEEUG00000009941 Erinaceus europaeus ENSEEUG00000009941 I 0.000
ENSEEUG00000006130 Erinaceus europaeus ENSEEUG00000006130 I 0.745
ENSEEUG00000000494 Erinaceus europaeus ENSEEUG00000000494 I 0.717
ENSFCAG00000010150 Felis catus ENSFCAG00000010150 I 0.752
HNRNPA3 Felis catus ENSFCAG00000012146 I 0.731
HNRPA3 Gallus gallus ENSGALG00000009250 I 0.731
HNRNPA3 Gasterosteus aculeatus ENSGACG00000004477 I 0.000
ENSGACG00000009435 Gasterosteus aculeatus ENSGACG00000009435 I 0.731
ENSGGOG00000025265 Gorilla gorilla ENSGGOG00000025265 I 0.000
ENSGGOG00000025381 Gorilla gorilla ENSGGOG00000025381 I 0.745
ENSGGOG00000025446 Gorilla gorilla ENSGGOG00000025446 I 0.703
ENSGGOG00000027879 Gorilla gorilla ENSGGOG00000027879 I 0.000
ENSGGOG00000024290 Gorilla gorilla ENSGGOG00000024290 I 0.000
ENSGGOG00000022020 Gorilla gorilla ENSGGOG00000022020 I 0.000
HNRNPA3 Gorilla gorilla ENSGGOG00000006130 I 0.733
HNRNPA1 Gorilla gorilla ENSGGOG00000003040 I 0.752
HNRNPA3 Homo sapiens ENSG00000170144 I 0.733
ENSG00000231942 Homo sapiens ENSG00000231942 I 0.000
ENSG00000215492 Homo sapiens ENSG00000215492 I 0.752
HNRNPA1L2 Homo sapiens ENSG00000139675 D 0.731
HNRNPA1 Homo sapiens ENSG00000135486 D 0.752
ENSLAFG00000030769 Loxodonta africana ENSLAFG00000030769 I 0.724
ENSLAFG00000029587 Loxodonta africana ENSLAFG00000029587 I 0.759
ENSLAFG00000029171 Loxodonta africana ENSLAFG00000029171 I 0.000
HNRNPA3 Loxodonta africana ENSLAFG00000027712 I 0.000
ENSLAFG00000026657 Loxodonta africana ENSLAFG00000026657 I 0.745
ENSMMUG00000005993 Macaca mulatta ENSMMUG00000005993 I 0.000
ENSMMUG00000007695 Macaca mulatta ENSMMUG00000007695 I 0.703
LOC710473 Macaca mulatta ENSMMUG00000007887 I 0.752
LOC710473 Macaca mulatta ENSMMUG00000007928 I 0.731
ENSMMUG00000008337 Macaca mulatta ENSMMUG00000008337 I 0.714
XR_011984.1 Macaca mulatta ENSMMUG00000011640 I 0.700
LOC710473 Macaca mulatta ENSMMUG00000012989 I 0.752
XR_010472.1 Macaca mulatta ENSMMUG00000012991 I 0.000
ENSMMUG00000005750 Macaca mulatta ENSMMUG00000005750 I 0.700
ENSMMUG00000004528 Macaca mulatta ENSMMUG00000004528 I 0.000
ENSMMUG00000031948 Macaca mulatta ENSMMUG00000031948 I 0.000
XM_001106745.1 Macaca mulatta ENSMMUG00000031809 I 0.000
ROA1_MACMU Macaca mulatta ENSMMUG00000031613 I 0.731
LOC710473 Macaca mulatta ENSMMUG00000029402 I 0.752
ENSMMUG00000022448 Macaca mulatta ENSMMUG00000022448 I 0.716
ENSMMUG00000018397 Macaca mulatta ENSMMUG00000018397 I 0.000
ENSMMUG00000001858 Macaca mulatta ENSMMUG00000001858 I 0.733
ENSMMUG00000004182 Macaca mulatta ENSMMUG00000004182 I 0.000
ENSMMUG00000013424 Macaca mulatta ENSMMUG00000013424 I 0.711
HNRNPA3 Macropus eugenii ENSMEUG00000013622 I 0.733
HNRNPA3 Meleagris gallopavo ENSMGAG00000009565 I 0.731
ENSMGAG00000007630 Meleagris gallopavo ENSMGAG00000007630 I 0.747
ENSMICG00000009289 Microcebus murinus ENSMICG00000009289 I 0.000
ENSMICG00000012083 Microcebus murinus ENSMICG00000012083 I 0.000
ENSMODG00000023422 Monodelphis domestica ENSMODG00000023422 I 0.701
HNRNPA3 Monodelphis domestica ENSMODG00000019803 I 0.733
ENSMODG00000006291 Monodelphis domestica ENSMODG00000006291 I 0.000
Hnrnpa3 Mus musculus ENSMUSG00000059005 I 0.733
Hnrnpa1 Mus musculus ENSMUSG00000046434 I 0.752
ENSMUSG00000021927 Mus musculus ENSMUSG00000021927 I 0.724
Gm8991 Mus musculus ENSMUSG00000059179 I 0.724
ENSMLUG00000003232 Myotis lucifugus ENSMLUG00000003232 I 0.738
ENSMLUG00000000788 Myotis lucifugus ENSMLUG00000000788 I 0.722
ENSMLUG00000000648 Myotis lucifugus ENSMLUG00000000648 I 0.752
HNRNPA3 Myotis lucifugus ENSMLUG00000003906 I 0.733
ENSOPRG00000006107 Ochotona princeps ENSOPRG00000006107 I 0.745
ENSOCUG00000028124 Oryctolagus cuniculus ENSOCUG00000028124 I 0.738
ENSOCUG00000023674 Oryctolagus cuniculus ENSOCUG00000023674 I 0.752
ENSOCUG00000023444 Oryctolagus cuniculus ENSOCUG00000023444 I 0.745
ENSOCUG00000023322 Oryctolagus cuniculus ENSOCUG00000023322 I 0.738
ENSOCUG00000022668 Oryctolagus cuniculus ENSOCUG00000022668 I 0.724
HNRNPA3 Oryctolagus cuniculus ENSOCUG00000002743 I 0.726
ENSOCUG00000010985 Oryctolagus cuniculus ENSOCUG00000010985 I 0.745
ENSOCUG00000013350 Oryctolagus cuniculus ENSOCUG00000013350 I 0.752
ENSOCUG00000021006 Oryctolagus cuniculus ENSOCUG00000021006 I 0.724
ENSOCUG00000021007 Oryctolagus cuniculus ENSOCUG00000021007 I 0.745
ENSOCUG00000022568 Oryctolagus cuniculus ENSOCUG00000022568 I 0.745
ENSOCUG00000022627 Oryctolagus cuniculus ENSOCUG00000022627 I 0.000
ENSORLG00000008001 Oryzias latipes ENSORLG00000008001 I 0.731
HNRNPA3 Oryzias latipes ENSORLG00000017561 I 0.707
ENSOGAG00000017179 Otolemur garnettii ENSOGAG00000017179 I 0.721
ENSOGAG00000009945 Otolemur garnettii ENSOGAG00000009945 I 0.731
ENSOGAG00000002398 Otolemur garnettii ENSOGAG00000002398 I 0.702
HNRNPA1L2 Pan troglodytes ENSPTRG00000032520 I 0.752
ROA1_PANTR Pan troglodytes ENSPTRG00000031363 I 0.752
ROA1_PANTR Pan troglodytes ENSPTRG00000028756 I 0.752
ENSPTRG00000018253 Pan troglodytes ENSPTRG00000018253 I 0.000
HNRNPA3 Pan troglodytes ENSPTRG00000012676 I 0.733
ROA1_PANTR Pan troglodytes ENSPTRG00000005035 I 0.752
ENSPPYG00000017853 Pongo pygmaeus ENSPPYG00000017853 I 0.724
ENSPPYG00000012967 Pongo pygmaeus ENSPPYG00000012967 I 0.705
ENSPPYG00000003855 Pongo pygmaeus ENSPPYG00000003855 I 0.000
ENSPPYG00000001012 Pongo pygmaeus ENSPPYG00000001012 I 0.000
ENSPCAG00000001867 Procavia capensis ENSPCAG00000001867 I 0.000
HNRNPA3 Pteropus vampyrus ENSPVAG00000010380 I 0.733
ENSPVAG00000000322 Pteropus vampyrus ENSPVAG00000000322 I 0.752
D3ZTB7_RAT Rattus norvegicus ENSRNOG00000031608 I 0.717
D4ABW2_RAT Rattus norvegicus ENSRNOG00000032168 I 0.000
ENSRNOG00000033182 Rattus norvegicus ENSRNOG00000033182 I 0.724
Hnrnpa1 Rattus norvegicus ENSRNOG00000036839 I 0.752
D3ZXA3_RAT Rattus norvegicus ENSRNOG00000038905 I 0.724
ENSRNOG00000039436 Rattus norvegicus ENSRNOG00000039436 I 0.724
ENSRNOG00000042093 Rattus norvegicus ENSRNOG00000042093 I 0.000
ENSRNOG00000030901 Rattus norvegicus ENSRNOG00000030901 I 0.000
D4A491_RAT Rattus norvegicus ENSRNOG00000029531 I 0.724
D3ZX95_RAT Rattus norvegicus ENSRNOG00000027006 I 0.000
ENSRNOG00000005951 Rattus norvegicus ENSRNOG00000005951 I 0.710
D3ZNE1_RAT Rattus norvegicus ENSRNOG00000005671 I 0.000
ENSRNOG00000011100 Rattus norvegicus ENSRNOG00000011100 I 0.000
ENSRNOG00000013650 Rattus norvegicus ENSRNOG00000013650 I 0.000
ENSRNOG00000021280 Rattus norvegicus ENSRNOG00000021280 I 0.000
D4A2D2_RAT Rattus norvegicus ENSRNOG00000021986 I 0.000
ENSRNOG00000023438 Rattus norvegicus ENSRNOG00000023438 I 0.000
D4AD23_RAT Rattus norvegicus ENSRNOG00000025891 I 0.701
ROA3_RAT Rattus norvegicus ENSRNOG00000027001 I 0.733
LOC100360986 Rattus norvegicus ENSRNOG00000001556 I 0.733
ENSSARG00000010620 Sorex araneus ENSSARG00000010620 I 0.000
ENSSARG00000008946 Sorex araneus ENSSARG00000008946 I 0.706
HNRNPA3 Sorex araneus ENSSARG00000007605 I 0.000
ENSSARG00000008882 Sorex araneus ENSSARG00000008882 I 0.000
ENSSTOG00000015259 Spermophilus tridecemlineatus ENSSTOG00000015259 I 0.000
ENSSSCG00000000288 Sus scrofa ENSSSCG00000000288 I 0.752
ENSSSCG00000015989 Sus scrofa ENSSSCG00000015989 I 0.000
HNRNPA3 Sus scrofa ENSSSCG00000015988 I 0.733
ENSSSCG00000005428 Sus scrofa ENSSSCG00000005428 I 0.000
HNRNPA3 Taeniopygia guttata ENSTGUG00000008996 I 0.731
Q1KKU4_FUGRU Takifugu rubripes ENSTRUG00000002190 I 0.738
HNRNPA3 Tetraodon nigroviridis ENSTNIG00000016958 I 0.000
ENSTNIG00000015047 Tetraodon nigroviridis ENSTNIG00000015047 I 0.731
ENSTBEG00000008238 Tupaia belangeri ENSTBEG00000008238 I 0.752
ENSTBEG00000016272 Tupaia belangeri ENSTBEG00000016272 I 0.710
ENSTBEG00000012511 Tupaia belangeri ENSTBEG00000012511 I 0.000
HNRNPA3 Tursiops truncatus ENSTTRG00000014225 I 0.733
ENSTTRG00000004505 Tursiops truncatus ENSTTRG00000004505 I 0.752
P17130 Xenopus laevis P17130 I 0.731
CBF67578 Xenopus laevis CBF67578 I 0.735
CBF67672 Xenopus laevis CBF67672 I 0.738
CBU92428 Xenopus laevis CBU92428 I 0.731
CBU92451 Xenopus laevis CBU92451 I 0.735
CBU92546 Xenopus laevis CBU92546 I 0.738
P51968 Xenopus laevis P51968 I 0.745
CBF67555 Xenopus laevis CBF67555 I 0.731
AAI69881 Xenopus laevis AAI69881 I 0.735
AAH72090 Xenopus laevis AAH72090 I 0.738
AAH45260 Xenopus laevis AAH45260 I 0.752
AAA49950 Xenopus laevis AAA49950 I 0.735
AAA49949 Xenopus laevis AAA49949 I 0.745
AAA49742 Xenopus laevis AAA49742 I 0.731
AAA49741 Xenopus laevis AAA49741 I 0.731
P51992 Xenopus laevis P51992 I 0.735
hnrnpa1 Xenopus tropicalis ENSXETG00000021277 I 0.752
hnrnpa3 Xenopus tropicalis ENSXETG00000001806 I 0.752