LOC100051268 (Equus caballus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSECAG00000022284 T36700_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
ELAVL4
M315_0.6 		Homo sapiens Sequence logo not available UUUUUUUUUWAAA RIP-chip
Cook et al.(2011)
619_19846595.2 		1.000
ELAVL4
M314_0.6 		Homo sapiens Sequence logo not available KUUUGUUUKKUUU RIP-chip
Cook et al.(2011)
619_19846595.1 		1.000
ELAVL4
M313_0.6 		Homo sapiens Sequence logo not available CYCUCCYUCYCYC RIP-chip
Cook et al.(2011)
619_19846595 		1.000
ELAVL2
M330_0.6 		Homo sapiens RWUUUAUUUWR SELEX
Cook et al.(2011)
784_7972035 		0.957
ELAVL2
M329_0.6 		Homo sapiens RWUUUAUUUWR SELEX
Cook et al.(2011)
783_7972035 		0.957
ELAVL2
M328_0.6 		Homo sapiens MUYCUUUWUWUUY SELEX
Cook et al.(2011)
782_8497264 		0.957
ELAVL1
M327_0.6 		Homo sapiens Sequence logo not available KKNWWDNNNUKNNUUNUNNH RIP-chip
Cook et al.(2011)
714_14981256 		0.774
ELAVL1
M112_0.6 		Homo sapiens UUURKUU RNAcompete
Ray et al.(2013)
RNCMPT00117 		0.774
ELAVL1
M232_0.6 		Homo sapiens UUUUUUK RNAcompete
Ray et al.(2013)
RNCMPT00274 		0.774
ELAVL1
M108_0.6 		Homo sapiens UUWGUUU RNAcompete
Ray et al.(2013)
RNCMPT00112 		0.774
ELAVL1
M127_0.6 		Homo sapiens UUKRUUU RNAcompete
Ray et al.(2013)
RNCMPT00136 		0.774
ELAVL1
M031_0.6 		Homo sapiens UUDUUUU RNAcompete
Ray et al.(2013)
RNCMPT00032 		0.774
Rbp9
M124_0.6 		Drosophila melanogaster UUDDGUU RNAcompete
Ray et al.(2013)
RNCMPT00132 		0.736
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSECAP00000019839 RRM 46 116
ENSECAP00000019839 RRM 132 200
ENSECAP00000019839 RRM 297 367

Links

Other RRM family RBPs
Other Equus caballus RBPs

191 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
XM_002864614.1 Arabidopsis lyrata fgenesh2_kg.8__1946__AT5G59950.1 N 0.000
XM_002870512.1 Arabidopsis lyrata fgenesh2_kg.7__3183__AT5G37720.2 N 0.000
XM_002873013.1 Arabidopsis lyrata fgenesh2_kg.6__165__AT5G02530.1 N 0.000
XM_002888447.1 Arabidopsis lyrata fgenesh2_kg.2__861__AT1G66260.1 N 0.000
AT1G66260 Arabidopsis thaliana AT1G66260-TAIR-G N 0.000
AT5G02530 Arabidopsis thaliana AT5G02530-TAIR-G N 0.000
ALY4 Arabidopsis thaliana AT5G37720-TAIR-G N 0.000
AT5G59950 Arabidopsis thaliana AT5G59950-TAIR-G N 0.000
BRADI4G45380 Brachypodium distachyon BRADI4G45380 N 0.000
BRADI3G36320 Brachypodium distachyon BRADI3G36320 N 0.000
BRADI1G44147 Brachypodium distachyon BRADI1G44147 N 0.000
PK16300.1 Cannabis sativa PK16300.1 N 0.000
Cucsa.137040 Cucumis sativus Cucsa.137040 N 0.000
Cucsa.172290 Cucumis sativus Cucsa.172290 N 0.000
Cucsa.213420 Cucumis sativus Cucsa.213420 N 0.000
Glyma18g04530.1 Glycine max Glyma18g04530.1 N 0.000
Glyma12g07010.1 Glycine max Glyma12g07010.1 N 0.000
Glyma11g33670.1 Glycine max Glyma11g33670.1 N 0.000
Glyma11g15040.1 Glycine max Glyma11g15040.1 N 0.000
Glyma13g40930.1 Glycine max Glyma13g40930.1 N 0.000
MDP0000119945 Malus x domestica MDP0000119945 N 0.000
MDP0000153894 Malus x domestica MDP0000153894 N 0.000
MDP0000202749 Malus x domestica MDP0000202749 N 0.000
MDP0000251188 Malus x domestica MDP0000251188 N 0.000
MDP0000275263 Malus x domestica MDP0000275263 N 0.000
MDP0000299639 Malus x domestica MDP0000299639 N 0.000
cassava37747.valid.m1 Manihot esculenta cassava37747.valid.m1 N 0.000
cassava6245.valid.m1 Manihot esculenta cassava6245.valid.m1 N 0.000
cassava6246.valid.m1 Manihot esculenta cassava6246.valid.m1 N 0.000
cassava9472.m1 Manihot esculenta cassava9472.m1 N 0.000
cassava9473.m1 Manihot esculenta cassava9473.m1 N 0.000
cassava37746.valid.m1 Manihot esculenta cassava37746.valid.m1 N 0.000
cassava35480.valid.m1 Manihot esculenta cassava35480.valid.m1 N 0.000
cassava30012.valid.m1 Manihot esculenta cassava30012.valid.m1 N 0.000
cassava30011.valid.m1 Manihot esculenta cassava30011.valid.m1 N 0.000
cassava30010.valid.m1 Manihot esculenta cassava30010.valid.m1 N 0.000
Medtr3g087640 Medicago truncatula Medtr3g087640 N 0.000
Medtr3g087650 Medicago truncatula Medtr3g087650 N 0.000
Medtr4g078540 Medicago truncatula Medtr4g078540 N 0.000
mgf010207m Mimulus guttatus mgf010207m N 0.000
mgf000319m Mimulus guttatus mgf000319m N 0.000
BGIOSIBCE021374 Oryza indica BGIOSIBCE021374 N 0.000
BGIOSIBCE010579 Oryza indica BGIOSIBCE010579 N 0.000
BGIOSIBCE027930 Oryza indica BGIOSIBCE027930 N 0.000
LOC_Os03g17010 Oryza sativa LOC_Os03g17010 N 0.000
LOC_Os06g14470 Oryza sativa LOC_Os06g14470 N 0.000
LOC_Os08g33120 Oryza sativa LOC_Os08g33120 N 0.000
B9GER3_POPTR Populus trichocarpa POPTR_0001s24350 N 0.000
B9GUT0_POPTR Populus trichocarpa POPTR_0017s02890 N 0.000
B9H3A7_POPTR Populus trichocarpa POPTR_0004s08540 N 0.000
B9NB27_POPTR Populus trichocarpa POPTR_0016s11470 N 0.000
ppa009623m Prunus persica ppa009623m N 0.000
ppa010358m Prunus persica ppa010358m N 0.000
29876.m000260 Ricinus communis 29876.m000260 N 0.000
SB01G039330 Sorghum bicolor Sb01g039330 N 0.000
SB10G009240 Sorghum bicolor Sb10g009240 N 0.000
SB07G020860 Sorghum bicolor Sb07g020860 N 0.000
GSVIVG00030785001 Vitis vinifera GSVIVG00030785001 N 0.000
GSVIVG00025009001 Vitis vinifera GSVIVG00025009001 N 0.000
GRMZM2G171921 Zea mays GRMZM2G171921 N 0.000
GRMZM2G166780 Zea mays GRMZM2G166780 N 0.000
GRMZM2G157329 Zea mays GRMZM2G157329 N 0.000