PBANKA_143980 (Plasmodium berghei)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 PBANKA_143980 T47284_0.6 EuPathDB (2010-Sep-21)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
PBANKA_143980 RRM 16 83

Links

Other RRM family RBPs
Other Plasmodium berghei RBPs

126 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
DGIL_AUG5s10565g5t1 Acyrtosiphon pisum DGIL_AUG5s10565g5t1 N 0.768
AAEL005909 Aedes aegypti AAEL005909 N 0.783
Ame_R001592 Ailuropoda melanoleuca Ame_R001592 N 0.754
ENSACAG00000011677 Anolis carolinensis ENSACAG00000011677 N 0.754
AGAP002780 Anopheles gambiae AGAP002780 N 0.783
amel4_ncbi_hmm5835 Apis mellifera amel4_ncbi_hmm5835 N 0.768
XM_002873508.1 Arabidopsis lyrata scaffold_601250.1 N 0.735
AT5G12190 Arabidopsis thaliana AT5G12190-TAIR-G N 0.735
EDO06533.1 Babesia bovis EDO06533.1 N 0.870
GP3.080340 Batrachochytrium dendrobatidis GP3.080340 N 0.706
Q2KIQ7_BOVIN Bos taurus ENSBTAG00000003407 N 0.754
BRADI1G04240 Brachypodium distachyon BRADI1G04240 N 0.710
estExt_GenewiseH_1.C_6800062 Branchiostoma floridae estExt_GenewiseH_1.C_6800062 N 0.754
LOC100386467 Callithrix jacchus ENSCJAG00000007716 N 0.754
XM_532889.2 Canis familiaris ENSCAFG00000003957 N 0.754
PK21780.1 Cannabis sativa PK21780.1 N 0.710
estExt_fgenesh1_pg.C_2760028 Capitella teleta estExt_fgenesh1_pg.C_2760028 N 0.725
ENSCPOG00000008016 Cavia porcellus ENSCPOG00000008016 N 0.754
ENSCHOG00000000689 Choloepus hoffmanni ENSCHOG00000000689 N 0.754
ENSCING00000012689 Ciona intestinalis ENSCING00000012689 N 0.739
ENSCSAVG00000008970 Ciona savignyi ENSCSAVG00000008970 N 0.754
CMU_001200 Cryptosporidium muris CMU_001200 N 0.797
Cucsa.086930 Cucumis sativus Cucsa.086930 N 0.721
CpipJ_CPIJ008576 Culex pipiens CpipJ_CPIJ008576 N 0.783
CPIJ008576 Culex quinquefasciatus CPIJ008576 N 0.783
sf3b14 Danio rerio ENSDARG00000009753 N 0.754
estExt_fgenesh1_kg.C_20004 Daphnia pulex estExt_fgenesh1_kg.C_20004 N 0.779
ENSDNOG00000007148 Dasypus novemcinctus ENSDNOG00000007148 N 0.754
0610009D07Rik Dipodomys ordii ENSDORG00000009772 N 0.754
GF10910 Drosophila ananassae FBgn0087950 N 0.779
GG14070 Drosophila erecta FBgn0106332 N 0.779
GH16287 Drosophila grimshawi FBgn0123758 N 0.779
CG13298 Drosophila melanogaster FBgn0035692 N 0.779
GI13232 Drosophila mojavensis FBgn0135989 N 0.779
GL22529 Drosophila persimilis FBgn0160121 N 0.779
GA12181-RA Drosophila pseudoobscura FBgn0072229 N 0.779
GM13852 Drosophila sechellia FBgn0168783 N 0.779
GD13137 Drosophila simulans FBgn0184859 N 0.779
GJ12004 Drosophila virilis FBgn0199256 N 0.779
GK17258 Drosophila willistoni FBgn0219257 N 0.779
GE20495 Drosophila yakuba FBgn0068445 N 0.779
e_gw1.13.49.1 Emiliania huxleyi e_gw1.13.49.1 N 0.794
LOC100056247 Equus caballus ENSECAG00000015618 N 0.754
ENSFCAG00000004304 Felis catus ENSFCAG00000004304 N 0.754
estExt_fgenesh2_kg.C_50105 Fragilariopsis cylindrus estExt_fgenesh2_kg.C_50105 N 0.739
SF3B14 Gallus gallus ENSGALG00000016501 N 0.754
ENSGACG00000004803 Gasterosteus aculeatus ENSGACG00000004803 N 0.754
Glyma02g44710.1 Glycine max Glyma02g44710.1 N 0.735
Glyma14g04020.1 Glycine max Glyma14g04020.1 N 0.710
68671 Helobdella robusta 68671 N 0.710
AC008073.5 Homo sapiens ENSG00000115128 N 0.754
XP_002160322.1 Hydra magnipapillata XP_002160322.1 N 0.710
ISCW024082 Ixodes scapularis ISCW024082 N 0.754
LOAG_04189 Loa loa LOAG_04189 N 0.750
estExt_fgenesh2_kg.C_sca_670005 Lottia gigantea estExt_fgenesh2_kg.C_sca_670005 N 0.725
chr2.CM0308.280.nc Lotus japonicus chr2.CM0308.280.nc N 0.735
ENSLAFG00000029423 Loxodonta africana ENSLAFG00000029423 N 0.754
XM_001098393.1 Macaca mulatta ENSMMUG00000001282 N 0.754
MDP0000185506 Malus x domestica MDP0000185506 N 0.710
cassava30358.valid.m1 Manihot esculenta cassava30358.valid.m1 N 0.710
Medtr5g096400 Medicago truncatula Medtr5g096400 N 0.735
ENSMGAG00000014057 Meleagris gallopavo ENSMGAG00000014057 N 0.754
Minc01156 Meloidogyne incognita Minc01156 N 0.710
mgf016428m Mimulus guttatus mgf016428m N 0.735
XM_001364269.1 Monodelphis domestica ENSMODG00000002144 N 0.725
0610009D07Rik Mus musculus ENSMUSG00000037361 N 0.754
ENSMLUG00000002473 Myotis lucifugus ENSMLUG00000002473 N 0.754
nasonia_NCBI_hmm648054 Nasonia vitripennis nasonia_NCBI_hmm648054 N 0.768
nasonia_NCBI_hmm146063 Nasonia vitripennis nasonia_NCBI_hmm146063 N 0.768
estExt_fgenesh1_pg.C_1580052 Nematostella vectensis estExt_fgenesh1_pg.C_1580052 N 0.783
NCLIV_001260 Neospora caninum NCLIV_001260 N 0.750
ENSOANG00000007627 Ornithorhynchus anatinus ENSOANG00000007627 N 0.754
ENSOCUG00000022008 Oryctolagus cuniculus ENSOCUG00000022008 N 0.754
BGIOSIBCE013412 Oryza indica BGIOSIBCE013412 N 0.739
LOC_Os03g59710 Oryza sativa LOC_Os03g59710 N 0.739
ENSORLG00000015955 Oryzias latipes ENSORLG00000015955 N 0.739
XM_515324.2 Pan troglodytes ENSPTRG00000011709 N 0.754
GSPATP00004048001 Paramecium tetraurelia GSPATP00004048001 N 0.725
GSPATP00010032001 Paramecium tetraurelia GSPATP00010032001 N 0.710
PHUM617060 Pediculus humanus PHUM617060 N 0.768
PHATR_8132 Phaeodactylum tricornutum Phatr8132 N 0.710
estExt_fgeneshPB_pg.C_50297 Phycomyces blakesleeanus estExt_fgeneshPB_pg.C_50297 N 0.706
estExt_Genewise1.C_630098 Physcomitrella patens estExt_Genewise1.C_630098 N 0.725
estExt_fgenesh1_pg.C_130126 Phytophthora capsici estExt_fgenesh1_pg.C_130126 N 0.765
PITG_10282 Phytophthora infestans PITG_10282 N 0.765
fgenesh1_pm.C_scaffold_108000003 Phytophthora ramorum fgenesh1_pm.C_scaffold_108000003 N 0.750
s_454910 Phytophthora sojae s_454910 N 0.765
PCHAS_144180 Plasmodium chabaudi PCHAS_144180 N 0.971
PFL1200c Plasmodium falciparum PFL1200c N 0.928
PKH_144160 Plasmodium knowlesi PKH_144160 N 0.928
PVX_123875 Plasmodium vivax PVX_123875 N 0.928
PY07239 Plasmodium yoelii PY07239 N 0.913
ENSPPYG00000012603 Pongo pygmaeus ENSPPYG00000012603 N 0.754
B9GG60_POPTR Populus trichocarpa POPTR_0001s28000 N 0.710
PPA24922 Pristionchus pacificus PPA24922 N 0.710
ppa013405m Prunus persica ppa013405m N 0.710
ppa013407m Prunus persica ppa013407m N 0.710
ENSPVAG00000011346 Pteropus vampyrus ENSPVAG00000011346 N 0.754
29868.m000351 Ricinus communis 29868.m000351 N 0.710
SPRG_00106 Saprolegnia parasitica SPRG_00106 N 0.768
estExt_fgenesh2_pg.C_240194 Selaginella moellendorfii estExt_fgenesh2_pg.C_240194 N 0.739
ENSSARG00000011902 Sorex araneus ENSSARG00000011902 N 0.754
SB01G003790 Sorghum bicolor Sb01g003790 N 0.725
SPPG_04286 Spizellomyces punctatus SPPG_04286 N 0.706
ENSSSCG00000008587 Sus scrofa ENSSSCG00000008587 N 0.754
SF3B14 Taeniopygia guttata ENSTGUG00000013191 N 0.754
ENSTRUG00000006551 Takifugu rubripes ENSTRUG00000006551 N 0.768
ENSTSYG00000013978 Tarsius syrichta ENSTSYG00000013978 N 0.754
160.m00066 Tetrahymena thermophila 160.m00066 N 0.706
ENSTNIG00000009719 Tetraodon nigroviridis ENSTNIG00000009719 N 0.768
THAPSDRAFT_20086 Thalassiosira pseudonana Thaps20086 N 0.768
TA13725 Theileria annulata TA13725 N 0.841
TP02_0539 Theileria parva TP02_0539 N 0.797
TGGT1_042490 Toxoplasma gondii TGGT1_042490 N 0.750
TGVEG_106330 Toxoplasma gondii TGVEG_106330 N 0.750
TGME49_105010 Toxoplasma gondii TGME49_105010 N 0.750
amel4_ncbi_hmm5835 Tribolium castaneum amel4_ncbi_hmm5835 N 0.768
fgeneshTA2_pm.C_scaffold_21000029 Trichoplax adhaerens fgeneshTA2_pm.C_scaffold_21000029 N 0.750
ENSTBEG00000012532 Tupaia belangeri ENSTBEG00000012532 N 0.754
ENSTTRG00000013430 Tursiops truncatus ENSTTRG00000013430 N 0.754
ENSVPAG00000005546 Vicugna pacos ENSVPAG00000005546 N 0.754
GSVIVG00037329001 Vitis vinifera GSVIVG00037329001 N 0.710
AAH57709 Xenopus laevis AAH57709 N 0.725
sf3b14 Xenopus tropicalis ENSXETG00000018204 N 0.739
GRMZM2G107745 Zea mays GRMZM2G107745 N 0.725
GRMZM2G358416 Zea mays GRMZM2G358416 N 0.725