e_gw1.24.94.1 (Capitella teleta)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 e_gw1.24.94.1 T49893_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
CPEB2
M012_0.6 		Homo sapiens CHUUUUU RNAcompete
Ray et al.(2013)
RNCMPT00012 		0.886
orb2
M120_0.6 		Drosophila melanogaster KUUUKKK RNAcompete
Ray et al.(2013)
RNCMPT00126 		0.870
CPEB4
M149_0.6 		Homo sapiens UUUUUU RNAcompete
Ray et al.(2013)
RNCMPT00158 		0.854
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
e_gw1.24.94.1 RRM 49 111
e_gw1.24.94.1 RRM 157 221

Links

Other RRM family RBPs
Other Capitella teleta RBPs

150 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
DGIL_AUG5s10609g1t1 Acyrtosiphon pisum DGIL_AUG5s10609g1t1 I 0.885
AAEL012065 Aedes aegypti AAEL012065 I 0.722
Ame_R004097 Ailuropoda melanoleuca Ame_R004097 I 0.901
Ame_R004815 Ailuropoda melanoleuca Ame_R004815 I 0.868
Ame_R003954 Ailuropoda melanoleuca Ame_R003954 I 0.875
CPEB4 Anolis carolinensis ENSACAG00000015039 I 0.868
ENSACAG00000012015 Anolis carolinensis ENSACAG00000012015 I 0.893
CPEB3 Anolis carolinensis ENSACAG00000006335 I 0.875
AGAP002296 Anopheles gambiae AGAP002296 I 0.823
amel4_ncbi_hmm4978 Apis mellifera amel4_ncbi_hmm4978 I 0.871
BGIBMGA001827 Bombyx mori BGIBMGA001827 I 0.871
CPEB2 Bos taurus ENSBTAG00000019847 I 0.901
CPEB3 Bos taurus ENSBTAG00000015450 I 0.875
A7Z087_BOVIN Bos taurus ENSBTAG00000009995 I 0.868
gw.572.2.1 Branchiostoma floridae gw.572.2.1 I 0.902
fgenesh2_pg.scaffold_143000050 Branchiostoma floridae fgenesh2_pg.scaffold_143000050 I 0.909
CPEB4 Callithrix jacchus ENSCJAG00000019166 I 0.868
LOC100402805 Callithrix jacchus ENSCJAG00000012227 I 0.901
LOC100392612 Callithrix jacchus ENSCJAG00000008495 I 0.875
CPEB4 Canis familiaris ENSCAFG00000016761 I 0.861
CPEB3 Canis familiaris ENSCAFG00000007423 I 0.875
CPEB2 Canis familiaris ENSCAFG00000015372 I 0.901
CPEB2 Cavia porcellus ENSCPOG00000001180 I 0.901
CPEB4 Cavia porcellus ENSCPOG00000015530 I 0.868
CPEB3 Choloepus hoffmanni ENSCHOG00000000272 I 0.869
CPEB2 Choloepus hoffmanni ENSCHOG00000003058 I 0.901
ENSCING00000001633 Ciona intestinalis ENSCING00000001633 I 0.844
CPEB2 Danio rerio ENSDARG00000052604 I 0.803
CPEB4 Danio rerio ENSDARG00000060495 I 0.860
cpeb3 Danio rerio ENSDARG00000060103 I 0.847
PASA_GEN_0800168 Daphnia pulex PASA_GEN_0800168 I 0.815
Cpeb2 Dipodomys ordii ENSDORG00000015311 I 0.901
GF10140 Drosophila ananassae FBgn0087181 I 0.878
GG15051 Drosophila erecta FBgn0107305 I 0.870
GH16131 Drosophila grimshawi FBgn0123602 I 0.877
orb2 Drosophila melanogaster FBgn0262573 D 0.870
GI12400 Drosophila mojavensis FBgn0135157 I 0.870
GL20808 Drosophila persimilis FBgn0158403 I 0.870
GA19094-RA Drosophila pseudoobscura FBgn0079092 I 0.870
GJ12289 Drosophila virilis FBgn0199538 I 0.870
GK17460 Drosophila willistoni FBgn0219459 I 0.870
GE21274 Drosophila yakuba FBgn0238542 I 0.870
CPEB3 Echinops telfairi ENSETEG00000000111 I 0.868
CPEB4 Echinops telfairi ENSETEG00000012142 I 0.766
LOC100058918 Equus caballus ENSECAG00000016921 I 0.868
CPEB3 Equus caballus ENSECAG00000000077 I 0.869
CPEB2 Equus caballus ENSECAG00000008722 I 0.901
CPEB4 Erinaceus europaeus ENSEEUG00000010887 I 0.868
CPEB3 Gallus gallus ENSGALG00000006912 I 0.875
CPEB2 Gallus gallus ENSGALG00000014516 I 0.901
CPEB4 Gallus gallus ENSGALG00000014074 I 0.855
CPEB2 Gasterosteus aculeatus ENSGACG00000013966 I 0.886
CPEB3 Gasterosteus aculeatus ENSGACG00000002944 I 0.839
CPEB4 Gasterosteus aculeatus ENSGACG00000020430 I 0.860
CPEB4 Gasterosteus aculeatus ENSGACG00000018422 I 0.860
CPEB2 Gorilla gorilla ENSGGOG00000004449 I 0.901
CPEB3 Gorilla gorilla ENSGGOG00000016441 I 0.875
CPEB4 Gorilla gorilla ENSGGOG00000010097 I 0.868
69117 Helobdella robusta 69117 N 0.733
111676 Helobdella robusta 111676 I 0.770
79994 Helobdella robusta 79994 I 0.748
CPEB4 Homo sapiens ENSG00000113742 D 0.868
CPEB2 Homo sapiens ENSG00000137449 D 0.901
CPEB3 Homo sapiens ENSG00000107864 I 0.875
XP_002159261.1 Hydra magnipapillata XP_002159261.1 I 0.774
ISCW010113 Ixodes scapularis ISCW010113 I 0.880
e_gw1.21.3.1 Lottia gigantea e_gw1.21.3.1 I 0.922
CPEB4 Loxodonta africana ENSLAFG00000016030 I 0.868
CPEB2 Loxodonta africana ENSLAFG00000007142 I 0.901
CPEB3 Loxodonta africana ENSLAFG00000018716 I 0.875
CPEB2 Macaca mulatta ENSMMUG00000001384 I 0.901
CPEB3 Macaca mulatta ENSMMUG00000015050 I 0.875
CPEB4 Macaca mulatta ENSMMUG00000019926 I 0.860
CPEB3 Macropus eugenii ENSMEUG00000009948 I 0.875
CPEB2 Macropus eugenii ENSMEUG00000008074 I 0.901
CPEB3 Meleagris gallopavo ENSMGAG00000009148 I 0.875
CPEB2 Meleagris gallopavo ENSMGAG00000005200 I 0.901
CPEB4 Meleagris gallopavo ENSMGAG00000003660 I 0.855
CPEB3 Microcebus murinus ENSMICG00000017842 I 0.875
CPEB3 Monodelphis domestica ENSMODG00000006673 I 0.875
CPEB2 Monodelphis domestica ENSMODG00000001149 I 0.901
CPEB4 Monodelphis domestica ENSMODG00000006036 I 0.868
Cpeb2 Mus musculus ENSMUSG00000039782 I 0.901
Cpeb4 Mus musculus ENSMUSG00000020300 I 0.868
Cpeb3 Mus musculus ENSMUSG00000039652 I 0.875
CPEB3 Myotis lucifugus ENSMLUG00000009474 I 0.716
CPEB4 Myotis lucifugus ENSMLUG00000014640 I 0.868
nasonia_NCBI_hmm338954 Nasonia vitripennis nasonia_NCBI_hmm338954 I 0.853
e_gw.6.76.1 Nematostella vectensis e_gw.6.76.1 I 0.840
CPEB4 Ochotona princeps ENSOPRG00000002868 I 0.868
SNAPOd2T00005918001 Oikopleura dioica SNAPOd2T00005918001 I 0.785
CPEB4 Ornithorhynchus anatinus ENSOANG00000003990 I 0.855
CPEB2 Ornithorhynchus anatinus ENSOANG00000003552 I 0.901
CPEB3 Ornithorhynchus anatinus ENSOANG00000015723 I 0.869
CPEB3 Oryctolagus cuniculus ENSOCUG00000010454 I 0.875
CPEB4 Oryctolagus cuniculus ENSOCUG00000008971 I 0.868
CPEB2 Oryctolagus cuniculus ENSOCUG00000007950 I 0.901
CPEB2 Oryzias latipes ENSORLG00000016222 I 0.886
CPEB3 Oryzias latipes ENSORLG00000000726 I 0.846
CPEB4 Oryzias latipes ENSORLG00000001711 I 0.860
CPEB4 Oryzias latipes ENSORLG00000007328 I 0.860
CPEB3 Otolemur garnettii ENSOGAG00000002002 I 0.707
CPEB2 Otolemur garnettii ENSOGAG00000011237 I 0.901
CPEB4 Otolemur garnettii ENSOGAG00000004243 I 0.868
CPEB4 Pan troglodytes ENSPTRG00000017545 I 0.868
XR_025355.1 Pan troglodytes ENSPTRG00000015924 I 0.901
CPEB3 Pan troglodytes ENSPTRG00000002753 I 0.875
PHUM335520 Pediculus humanus PHUM335520 I 0.885
ENSPPYG00000014613 Pongo pygmaeus ENSPPYG00000014613 I 0.901
ENSPPYG00000016058 Pongo pygmaeus ENSPPYG00000016058 I 0.868
ENSPPYG00000002481 Pongo pygmaeus ENSPPYG00000002481 I 0.875
CPEB4 Procavia capensis ENSPCAG00000007021 I 0.868
CPEB3 Procavia capensis ENSPCAG00000012417 I 0.787
CPEB3 Pteropus vampyrus ENSPVAG00000007664 I 0.863
CPEB4 Pteropus vampyrus ENSPVAG00000007863 I 0.868
CPEB2 Pteropus vampyrus ENSPVAG00000007732 I 0.869
D3ZHK8_RAT Rattus norvegicus ENSRNOG00000005043 I 0.855
Cpeb3 Rattus norvegicus ENSRNOG00000020689 I 0.875
Cpeb4 Rattus norvegicus ENSRNOG00000033169 I 0.868
CPEB3 Sorex araneus ENSSARG00000001994 I 0.869
CPEB2 Sorex araneus ENSSARG00000010559 I 0.809
CPEB4 Sorex araneus ENSSARG00000013389 I 0.853
CPEB4 Spermophilus tridecemlineatus ENSSTOG00000006077 I 0.861
XP_789277.1 Strongylocentrotus purpuratus XP_789277.1 I 0.872
XP_001187928.1 Strongylocentrotus purpuratus XP_001187928.1 I 0.872
CPEB2 Sus scrofa ENSSSCG00000008736 I 0.901
CPEB3 Sus scrofa ENSSSCG00000010468 I 0.875
CPEB4 Sus scrofa ENSSSCG00000016981 I 0.717
CPEB2 Taeniopygia guttata ENSTGUG00000009822 I 0.901
CPEB4 Taeniopygia guttata ENSTGUG00000000329 I 0.868
CPEB3 Taeniopygia guttata ENSTGUG00000008988 I 0.875
CPEB2 Takifugu rubripes ENSTRUG00000013956 I 0.886
CPEB3 Takifugu rubripes ENSTRUG00000011309 I 0.841
CPEB4 Takifugu rubripes ENSTRUG00000010947 I 0.860
CPEB4 Takifugu rubripes ENSTRUG00000010692 I 0.860
CPEB4 Tarsius syrichta ENSTSYG00000003136 I 0.868
CPEB3 Tetraodon nigroviridis ENSTNIG00000004021 I 0.841
CPEB4 Tetraodon nigroviridis ENSTNIG00000017077 I 0.860
CPEB2 Tetraodon nigroviridis ENSTNIG00000017678 I 0.886
fgeneshTA2_pg.C_scaffold_8000081 Trichoplax adhaerens fgeneshTA2_pg.C_scaffold_8000081 I 0.826
CPEB3 Tupaia belangeri ENSTBEG00000013125 I 0.875
CPEB4 Tupaia belangeri ENSTBEG00000001429 I 0.868
CPEB2 Tursiops truncatus ENSTTRG00000003940 I 0.901
CPEB3 Tursiops truncatus ENSTTRG00000012334 I 0.757
CPEB2 Vicugna pacos ENSVPAG00000006185 I 0.809
CPEB3 Vicugna pacos ENSVPAG00000002144 I 0.716
CPEB4 Vicugna pacos ENSVPAG00000010897 I 0.779
ADH10187 Xenopus laevis ADH10187 I 0.868
cpeb3 Xenopus tropicalis ENSXETG00000012190 I 0.875
cpeb2 Xenopus tropicalis ENSXETG00000020324 I 0.848