Glyma15g41960.1 (Glycine max)
YTH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF04146 (YTH) IPR007275 Glyma15g41960.1 T62405_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
Glyma15g41960.1 YTH 422 512

Links

Other YTH family RBPs
Other Glycine max RBPs

141 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Glyma08g17240.1 Glycine max Glyma08g17240.1 N 0.978
LjSGA_032005.1 Lotus japonicus LjSGA_032005.1 N 0.956
Medtr2g085380 Medicago truncatula Medtr2g085380 N 0.934
GSVIVG00036696001 Vitis vinifera GSVIVG00036696001 N 0.912
ppa003664m Prunus persica ppa003664m N 0.912
B9HI18_POPTR Populus trichocarpa POPTR_0008s08030 N 0.901
B9HYD4_POPTR Populus trichocarpa POPTR_0010s18300 N 0.901
MDP0000171737 Malus x domestica MDP0000171737 N 0.890
MDP0000231231 Malus x domestica MDP0000231231 N 0.890
MDP0000286471 Malus x domestica MDP0000286471 N 0.890
29955.m001158 Ricinus communis 29955.m001158 N 0.879
cassava17771.valid.m1 Manihot esculenta cassava17771.valid.m1 N 0.879
cassava17772.valid.m1 Manihot esculenta cassava17772.valid.m1 N 0.879
ECT8 Arabidopsis thaliana AT1G79270-TAIR-G N 0.868
XM_002887730.1 Arabidopsis lyrata fgenesh2_kg.2__2224__AT1G79270.1 N 0.868
PK23104.1 Cannabis sativa PK23104.1 N 0.868
BGIOSIBCE003171 Oryza indica BGIOSIBCE003171 N 0.857
LOC_Os01g48790 Oryza sativa LOC_Os01g48790 N 0.857
BRADI2G46590 Brachypodium distachyon BRADI2G46590 N 0.846
GRMZM2G169116 Zea mays GRMZM2G169116 N 0.835
SB03G031190 Sorghum bicolor Sb03g031190 N 0.835
PDK_20s1631851g001 Phoenix dactylifera PDK_20s1631851g001 N 0.835
GRMZM2G127780 Zea mays GRMZM2G127780 N 0.835
gw1.181.55.1 Physcomitrella patens gw1.181.55.1 N 0.824
B9N5D4_POPTR Populus trichocarpa POPTR_0014s00320 N 0.813
MDP0000617859 Malus x domestica MDP0000617859 N 0.813
B9HG69_POPTR Populus trichocarpa POPTR_0007s15150 N 0.813
MDP0000405927 Malus x domestica MDP0000405927 N 0.813
MDP0000287088 Malus x domestica MDP0000287088 N 0.813
Glyma07g00280.1 Glycine max Glyma07g00280.1 N 0.813
Glyma08g24210.1 Glycine max Glyma08g24210.1 N 0.813
ECT5 Arabidopsis thaliana AT3G13060-TAIR-G N 0.802
PK26094.1 Cannabis sativa PK26094.1 N 0.802
ppa002588m Prunus persica ppa002588m N 0.802
cassava1917.valid.m1 Manihot esculenta cassava1917.valid.m1 N 0.802
cassava1918.valid.m1 Manihot esculenta cassava1918.valid.m1 N 0.802
cassava1916.valid.m1 Manihot esculenta cassava1916.valid.m1 N 0.802
gw1.198.66.1 Physcomitrella patens gw1.198.66.1 N 0.802
ppa002483m Prunus persica ppa002483m N 0.802
GSVIVG00017649001 Vitis vinifera GSVIVG00017649001 N 0.802
XM_002882758.1 Arabidopsis lyrata fgenesh2_kg.3__1376__AT3G13060.2 N 0.802
MDP0000552419 Malus x domestica MDP0000552419 N 0.802
Medtr8g134440 Medicago truncatula Medtr8g134440 N 0.802
Medtr4g163280 Medicago truncatula Medtr4g163280 N 0.802
MDP0000248088 Malus x domestica MDP0000248088 N 0.802
Medtr2g036990 Medicago truncatula Medtr2g036990 N 0.791
chr6.LjT36O06.80.nd Lotus japonicus chr6.LjT36O06.80.nd N 0.791
B9GMK5_POPTR Populus trichocarpa POPTR_0001s13870 N 0.791
GSVIVG00029460001 Vitis vinifera GSVIVG00029460001 N 0.791
cassava6538.valid.m1 Manihot esculenta cassava6538.valid.m1 N 0.791
Glyma17g04270.1 Glycine max Glyma17g04270.1 N 0.791
cassava42993.valid.m1 Manihot esculenta cassava42993.valid.m1 N 0.780
LOC_Os08g12760 Oryza sativa LOC_Os08g12760 N 0.780
cassava12061.valid.m1 Manihot esculenta cassava12061.valid.m1 N 0.780
GSVIVG00010494001 Vitis vinifera GSVIVG00010494001 N 0.780
BGIOSIBCE026930 Oryza indica BGIOSIBCE026930 N 0.780
chr3.CM0292.380.nc Lotus japonicus chr3.CM0292.380.nc N 0.780
Glyma09g03590.1 Glycine max Glyma09g03590.1 N 0.780
29929.m004643 Ricinus communis 29929.m004643 N 0.780
GRMZM2G442195 Zea mays GRMZM2G442195 N 0.780
cassava42992.valid.m1 Manihot esculenta cassava42992.valid.m1 N 0.780
ppa018635m Prunus persica ppa018635m N 0.780
PK17832.1 Cannabis sativa PK17832.1 N 0.780
MDP0000306387 Malus x domestica MDP0000306387 N 0.769
SB07G006330 Sorghum bicolor Sb07g006330 N 0.769
SB07G024500 Sorghum bicolor Sb07g024500 N 0.769
Glyma15g14490.1 Glycine max Glyma15g14490.1 N 0.769
29889.m003364 Ricinus communis 29889.m003364 N 0.769
29765.m000746 Ricinus communis 29765.m000746 N 0.769
Cucsa.135220 Cucumis sativus Cucsa.135220 N 0.769
LOC_Os04g51940 Oryza sativa LOC_Os04g51940 N 0.769
MDP0000132385 Malus x domestica MDP0000132385 N 0.769
GRMZM2G025488 Zea mays GRMZM2G025488 N 0.769
MDP0000488248 Malus x domestica MDP0000488248 N 0.769
MDP0000256033 Malus x domestica MDP0000256033 N 0.769
PK02315.1 Cannabis sativa PK02315.1 N 0.769
Glyma07g36110.1 Glycine max Glyma07g36110.1 N 0.769
PDK_20s1352821g002 Phoenix dactylifera PDK_20s1352821g002 N 0.769
mgf014829m Mimulus guttatus mgf014829m N 0.758
B9HII9_POPTR Populus trichocarpa POPTR_0008s09960 N 0.758
mgf001716m Mimulus guttatus mgf001716m N 0.758
ppa003557m Prunus persica ppa003557m N 0.758
PK01736.1 Cannabis sativa PK01736.1 N 0.758
B9N817_POPTR Populus trichocarpa POPTR_0018s14670 N 0.758
LOC_Os08g44200 Oryza sativa LOC_Os08g44200 N 0.758
mgf019846m Mimulus guttatus mgf019846m N 0.758
BGIOSIBCE028829 Oryza indica BGIOSIBCE028829 N 0.758
mgf014143m Mimulus guttatus mgf014143m N 0.747
mgf015583m Mimulus guttatus mgf015583m N 0.747
B9N0D5_POPTR Populus trichocarpa POPTR_0004s23250 N 0.747
cassava13324.valid.m1 Manihot esculenta cassava13324.valid.m1 N 0.747
BRADI3G18190 Brachypodium distachyon BRADI3G18190 N 0.747
BRADI3G42640 Brachypodium distachyon BRADI3G42640 N 0.747
gw1.1.157.1 Selaginella moellendorfii gw1.1.157.1 N 0.747
GSVIVG00023248001 Vitis vinifera GSVIVG00023248001 N 0.747
cassava13322.valid.m1 Manihot esculenta cassava13322.valid.m1 N 0.747
cassava14932.m1 Manihot esculenta cassava14932.m1 N 0.747
mgf017987m Mimulus guttatus mgf017987m N 0.747
cassava13323.valid.m1 Manihot esculenta cassava13323.valid.m1 N 0.747
B9N770_POPTR Populus trichocarpa POPTR_0022s00680 N 0.736
BGIOSIBCE010884 Oryza indica BGIOSIBCE010884 N 0.736
Cucsa.356240 Cucumis sativus Cucsa.356240 N 0.736
SB06G027960 Sorghum bicolor Sb06g027960 N 0.736
XM_002894050.1 Arabidopsis lyrata fgenesh2_kg.1__3903__AT1G48110.2 N 0.736
LOC_Os03g20180 Oryza sativa LOC_Os03g20180 N 0.736
PK05579.1 Cannabis sativa PK05579.1 N 0.736
ECT7 Arabidopsis thaliana AT1G48110-TAIR-G N 0.736
B9HX84_POPTR Populus trichocarpa POPTR_0010s16210 N 0.736
ppa002677m Prunus persica ppa002677m N 0.725
BGIOSIBCE016517 Oryza indica BGIOSIBCE016517 N 0.725
PDK_20s1308332g001 Phoenix dactylifera PDK_20s1308332g001 N 0.725
BGIOSIBCE017245 Oryza indica BGIOSIBCE017245 N 0.725
LOC_Os05g01520 Oryza sativa LOC_Os05g01520 N 0.725
mgf019821m Mimulus guttatus mgf019821m N 0.725
XM_002885156.1 Arabidopsis lyrata Al_scaffold_0003_1823 N 0.725
29890.m000285 Ricinus communis 29890.m000285 N 0.714
GSVIVG00033395001 Vitis vinifera GSVIVG00033395001 N 0.714
GRMZM2G076062 Zea mays GRMZM2G076062 N 0.714
ECT6 Arabidopsis thaliana AT3G17330-TAIR-G N 0.714
GRMZM2G126338 Zea mays GRMZM2G126338 N 0.714
GRMZM2G330019 Zea mays GRMZM2G330019 N 0.714
BRADI1G64100 Brachypodium distachyon BRADI1G64100 N 0.714
BRADI3G06027 Brachypodium distachyon BRADI3G06027 N 0.714
Sb01g046550 Sorghum bicolor Sb01g046550 N 0.714
SB01G008170 Sorghum bicolor Sb01g008170 N 0.714
LOC_Os03g53670 Oryza sativa LOC_Os03g53670 N 0.714
GSVIVG00032236001 Vitis vinifera GSVIVG00032236001 N 0.714
SB09G000580 Sorghum bicolor Sb09g000580 N 0.714
BRADI1G74560 Brachypodium distachyon BRADI1G74560 N 0.703
MDP0000488588 Malus x domestica MDP0000488588 N 0.703
PDK_20s1441394g001 Phoenix dactylifera PDK_20s1441394g001 N 0.703
MDP0000124048 Malus x domestica MDP0000124048 N 0.703
mgf013853m Mimulus guttatus mgf013853m N 0.703
mgf009938m Mimulus guttatus mgf009938m N 0.703
BGIOSIBCE009738 Oryza indica BGIOSIBCE009738 N 0.703
BRADI5G01317 Brachypodium distachyon BRADI5G01317 N 0.703
A9PED2_POPTR Populus trichocarpa POPTR_0019s04990 N 0.703
B9HBC4_POPTR Populus trichocarpa POPTR_0006s07970 N 0.703
B9GXX7_POPTR Populus trichocarpa POPTR_0003s20840 N 0.703
LOC_Os03g06240 Oryza sativa LOC_Os03g06240 N 0.703
SB02G003990 Sorghum bicolor Sb02g003990 N 0.703