PDK_20s1631851g001 (Phoenix dactylifera)
YTH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF04146 (YTH) IPR007275 PDK_20s1631851g001 T62557_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
PDK_20s1631851g001 YTH 434 524

Links

Other YTH family RBPs
Other Phoenix dactylifera RBPs

165 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
GSVIVG00036696001 Vitis vinifera GSVIVG00036696001 N 0.879
B9HYD4_POPTR Populus trichocarpa POPTR_0010s18300 N 0.868
B9HI18_POPTR Populus trichocarpa POPTR_0008s08030 N 0.868
MDP0000171737 Malus x domestica MDP0000171737 N 0.857
cassava17772.valid.m1 Manihot esculenta cassava17772.valid.m1 N 0.846
Medtr2g085380 Medicago truncatula Medtr2g085380 N 0.846
cassava17771.valid.m1 Manihot esculenta cassava17771.valid.m1 N 0.846
Glyma15g41960.1 Glycine max Glyma15g41960.1 N 0.835
BGIOSIBCE003171 Oryza indica BGIOSIBCE003171 N 0.835
MDP0000286471 Malus x domestica MDP0000286471 N 0.835
XM_002887730.1 Arabidopsis lyrata fgenesh2_kg.2__2224__AT1G79270.1 N 0.835
LOC_Os01g48790 Oryza sativa LOC_Os01g48790 N 0.835
Glyma08g17240.1 Glycine max Glyma08g17240.1 N 0.835
ECT8 Arabidopsis thaliana AT1G79270-TAIR-G N 0.835
MDP0000231231 Malus x domestica MDP0000231231 N 0.835
ppa003664m Prunus persica ppa003664m N 0.835
BRADI2G46590 Brachypodium distachyon BRADI2G46590 N 0.824
LjSGA_032005.1 Lotus japonicus LjSGA_032005.1 N 0.824
29955.m001158 Ricinus communis 29955.m001158 N 0.824
GRMZM2G169116 Zea mays GRMZM2G169116 N 0.824
SB03G031190 Sorghum bicolor Sb03g031190 N 0.824
chr3.CM0292.380.nc Lotus japonicus chr3.CM0292.380.nc N 0.813
GRMZM2G127780 Zea mays GRMZM2G127780 N 0.813
PK23104.1 Cannabis sativa PK23104.1 N 0.802
gw1.198.66.1 Physcomitrella patens gw1.198.66.1 N 0.791
MDP0000248088 Malus x domestica MDP0000248088 N 0.791
ppa002483m Prunus persica ppa002483m N 0.791
gw1.181.55.1 Physcomitrella patens gw1.181.55.1 N 0.791
MDP0000552419 Malus x domestica MDP0000552419 N 0.791
ppa002588m Prunus persica ppa002588m N 0.791
MDP0000287088 Malus x domestica MDP0000287088 N 0.791
MDP0000405927 Malus x domestica MDP0000405927 N 0.791
MDP0000617859 Malus x domestica MDP0000617859 N 0.791
XM_002882758.1 Arabidopsis lyrata fgenesh2_kg.3__1376__AT3G13060.2 N 0.780
B9GMK5_POPTR Populus trichocarpa POPTR_0001s13870 N 0.780
Medtr4g163280 Medicago truncatula Medtr4g163280 N 0.780
Glyma07g00280.1 Glycine max Glyma07g00280.1 N 0.780
MDP0000488248 Malus x domestica MDP0000488248 N 0.780
ECT5 Arabidopsis thaliana AT3G13060-TAIR-G N 0.780
Glyma08g24210.1 Glycine max Glyma08g24210.1 N 0.780
29765.m000746 Ricinus communis 29765.m000746 N 0.780
PK26094.1 Cannabis sativa PK26094.1 N 0.780
cassava13324.valid.m1 Manihot esculenta cassava13324.valid.m1 N 0.769
cassava14932.m1 Manihot esculenta cassava14932.m1 N 0.769
cassava13323.valid.m1 Manihot esculenta cassava13323.valid.m1 N 0.769
ppa003557m Prunus persica ppa003557m N 0.769
B9N5D4_POPTR Populus trichocarpa POPTR_0014s00320 N 0.769
cassava13322.valid.m1 Manihot esculenta cassava13322.valid.m1 N 0.769
GSVIVG00017649001 Vitis vinifera GSVIVG00017649001 N 0.769
cassava1917.valid.m1 Manihot esculenta cassava1917.valid.m1 N 0.769
cassava1916.valid.m1 Manihot esculenta cassava1916.valid.m1 N 0.769
cassava1918.valid.m1 Manihot esculenta cassava1918.valid.m1 N 0.769
GSVIVG00029460001 Vitis vinifera GSVIVG00029460001 N 0.769
MDP0000256033 Malus x domestica MDP0000256033 N 0.769
Glyma15g14490.1 Glycine max Glyma15g14490.1 N 0.769
PK17832.1 Cannabis sativa PK17832.1 N 0.769
mgf001716m Mimulus guttatus mgf001716m N 0.758
Glyma09g03590.1 Glycine max Glyma09g03590.1 N 0.758
MDP0000306387 Malus x domestica MDP0000306387 N 0.758
SB07G006330 Sorghum bicolor Sb07g006330 N 0.758
mgf014829m Mimulus guttatus mgf014829m N 0.758
B9HG69_POPTR Populus trichocarpa POPTR_0007s15150 N 0.758
cassava42993.valid.m1 Manihot esculenta cassava42993.valid.m1 N 0.758
Medtr8g134440 Medicago truncatula Medtr8g134440 N 0.758
MDP0000132385 Malus x domestica MDP0000132385 N 0.758
cassava42992.valid.m1 Manihot esculenta cassava42992.valid.m1 N 0.758
Cucsa.135220 Cucumis sativus Cucsa.135220 N 0.747
SB07G024500 Sorghum bicolor Sb07g024500 N 0.747
Glyma17g04270.1 Glycine max Glyma17g04270.1 N 0.747
GRMZM2G025488 Zea mays GRMZM2G025488 N 0.747
gw1.1.157.1 Selaginella moellendorfii gw1.1.157.1 N 0.747
cassava6538.valid.m1 Manihot esculenta cassava6538.valid.m1 N 0.747
29929.m004643 Ricinus communis 29929.m004643 N 0.747
LOC_Os08g44200 Oryza sativa LOC_Os08g44200 N 0.747
BGIOSIBCE028829 Oryza indica BGIOSIBCE028829 N 0.747
SB02G003990 Sorghum bicolor Sb02g003990 N 0.747
LOC_Os08g12760 Oryza sativa LOC_Os08g12760 N 0.747
LOC_Os03g20180 Oryza sativa LOC_Os03g20180 N 0.747
GSVIVG00010494001 Vitis vinifera GSVIVG00010494001 N 0.747
GSVIVG00033395001 Vitis vinifera GSVIVG00033395001 N 0.747
B9HII9_POPTR Populus trichocarpa POPTR_0008s09960 N 0.747
B9N0D5_POPTR Populus trichocarpa POPTR_0004s23250 N 0.747
PDK_20s1352821g002 Phoenix dactylifera PDK_20s1352821g002 N 0.747
BGIOSIBCE026930 Oryza indica BGIOSIBCE026930 N 0.747
Medtr2g036990 Medicago truncatula Medtr2g036990 N 0.747
BGIOSIBCE010884 Oryza indica BGIOSIBCE010884 N 0.747
BRADI3G18190 Brachypodium distachyon BRADI3G18190 N 0.736
mgf015583m Mimulus guttatus mgf015583m N 0.736
mgf014143m Mimulus guttatus mgf014143m N 0.736
ECT7 Arabidopsis thaliana AT1G48110-TAIR-G N 0.736
MDP0000488588 Malus x domestica MDP0000488588 N 0.736
BRADI1G05970 Brachypodium distachyon BRADI1G05970 N 0.736
ppa018635m Prunus persica ppa018635m N 0.736
mgf017987m Mimulus guttatus mgf017987m N 0.736
B9N770_POPTR Populus trichocarpa POPTR_0022s00680 N 0.736
29889.m003364 Ricinus communis 29889.m003364 N 0.736
GRMZM2G442195 Zea mays GRMZM2G442195 N 0.736
chr6.LjT36O06.80.nd Lotus japonicus chr6.LjT36O06.80.nd N 0.736
XM_002894050.1 Arabidopsis lyrata fgenesh2_kg.1__3903__AT1G48110.2 N 0.736
cassava12061.valid.m1 Manihot esculenta cassava12061.valid.m1 N 0.736
GRMZM2G144726 Zea mays GRMZM2G144726 N 0.736
ECT1 Arabidopsis thaliana AT3G03950-TAIR-G N 0.725
Cucsa.356240 Cucumis sativus Cucsa.356240 N 0.725
Glyma07g36110.1 Glycine max Glyma07g36110.1 N 0.725
PK01736.1 Cannabis sativa PK01736.1 N 0.725
PK02315.1 Cannabis sativa PK02315.1 N 0.725
B9HX84_POPTR Populus trichocarpa POPTR_0010s16210 N 0.725
BRADI3G42640 Brachypodium distachyon BRADI3G42640 N 0.725
BRADI3G06027 Brachypodium distachyon BRADI3G06027 N 0.725
LOC_Os04g51940 Oryza sativa LOC_Os04g51940 N 0.725
BRADI1G64100 Brachypodium distachyon BRADI1G64100 N 0.725
mgf019846m Mimulus guttatus mgf019846m N 0.725
MDP0000124048 Malus x domestica MDP0000124048 N 0.714
mgf013853m Mimulus guttatus mgf013853m N 0.714
mgf009938m Mimulus guttatus mgf009938m N 0.714
PDK_20s1308332g001 Phoenix dactylifera PDK_20s1308332g001 N 0.714
cassava12387.valid.m1 Manihot esculenta cassava12387.valid.m1 N 0.714
SB01G005500 Sorghum bicolor Sb01g005500 N 0.714
B9N817_POPTR Populus trichocarpa POPTR_0018s14670 N 0.714
LOC_Os07g07490 Oryza sativa LOC_Os07g07490 N 0.714
cassava38867.m1 Manihot esculenta cassava38867.m1 N 0.714
29890.m000285 Ricinus communis 29890.m000285 N 0.714
cassava12388.valid.m1 Manihot esculenta cassava12388.valid.m1 N 0.714
cassava12386.valid.m1 Manihot esculenta cassava12386.valid.m1 N 0.714
LOC_Os05g01520 Oryza sativa LOC_Os05g01520 N 0.714
LOC_Os03g53670 Oryza sativa LOC_Os03g53670 N 0.714
BGIOSIBCE017245 Oryza indica BGIOSIBCE017245 N 0.714
BGIOSIBCE023845 Oryza indica BGIOSIBCE023845 N 0.714
BRADI5G01317 Brachypodium distachyon BRADI5G01317 N 0.714
XM_002882275.1 Arabidopsis lyrata fgenesh2_kg.3__349__AT3G03950.3 N 0.714
XM_002866364.1 Arabidopsis lyrata fgenesh2_kg.8__2071__AT5G61020.1 N 0.714
ECT3 Arabidopsis thaliana AT5G61020-TAIR-G N 0.714
GSVIVG00023248001 Vitis vinifera GSVIVG00023248001 N 0.714
cassava30727.valid.m1 Manihot esculenta cassava30727.valid.m1 N 0.714
cassava12389.valid.m1 Manihot esculenta cassava12389.valid.m1 N 0.714
PK05579.1 Cannabis sativa PK05579.1 N 0.714
cassava35663.valid.m1 Manihot esculenta cassava35663.valid.m1 N 0.714
cassava35662.valid.m1 Manihot esculenta cassava35662.valid.m1 N 0.714
cassava35665.valid.m1 Manihot esculenta cassava35665.valid.m1 N 0.714
ppa002677m Prunus persica ppa002677m N 0.714
cassava38866.m1 Manihot esculenta cassava38866.m1 N 0.714
cassava35667.valid.m1 Manihot esculenta cassava35667.valid.m1 N 0.714
cassava35666.valid.m1 Manihot esculenta cassava35666.valid.m1 N 0.714
cassava35661.valid.m1 Manihot esculenta cassava35661.valid.m1 N 0.714
cassava35660.valid.m1 Manihot esculenta cassava35660.valid.m1 N 0.714
cassava30729.valid.m1 Manihot esculenta cassava30729.valid.m1 N 0.714
cassava30728.valid.m1 Manihot esculenta cassava30728.valid.m1 N 0.714
cassava35657.valid.m1 Manihot esculenta cassava35657.valid.m1 N 0.714
cassava35658.valid.m1 Manihot esculenta cassava35658.valid.m1 N 0.714
cassava35659.valid.m1 Manihot esculenta cassava35659.valid.m1 N 0.714
ECT4 Arabidopsis thaliana AT1G55500-TAIR-G N 0.703
ECT10 Arabidopsis thaliana AT5G58190-TAIR-G N 0.703
ECT6 Arabidopsis thaliana AT3G17330-TAIR-G N 0.703
XM_002885156.1 Arabidopsis lyrata Al_scaffold_0003_1823 N 0.703
BRADI4G02150 Brachypodium distachyon BRADI4G02150 N 0.703
SB01G008170 Sorghum bicolor Sb01g008170 N 0.703
mgf013935m Mimulus guttatus mgf013935m N 0.703
Glyma19g28710.1 Glycine max Glyma19g28710.1 N 0.703
Glyma16g04590.1 Glycine max Glyma16g04590.1 N 0.703
GRMZM2G126338 Zea mays GRMZM2G126338 N 0.703
A9PED2_POPTR Populus trichocarpa POPTR_0019s04990 N 0.703
XM_002864508.1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_8001450 N 0.703
GSVIVG00025494001 Vitis vinifera GSVIVG00025494001 N 0.703
GSVIVG00032236001 Vitis vinifera GSVIVG00032236001 N 0.703
XM_002891791.1 Arabidopsis lyrata fgenesh1_pg.C_scaffold_1004195 N 0.703