CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
Home
Tools
Download cart
Bulk downloads
Database stats
Contact us
Help
How to cite
LjSGA_032005.1
(
Lotus japonicus
)
YTH
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF04146 (YTH)
IPR007275
LjSGA_032005.1
T62521_0.6
Superfamily (2011-Oct-26)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
LjSGA_032005.1
YTH
162
252
LFFSVNASGQFCGVAEMIGRVDFNRSMDFWQQDKWNGYFPVKWHIIKDVPNPQLRRIILENNDHKPVTNSRDTQEVSFPQGVEMLNIFKNY
Links
Other
YTH
family RBPs
Other
Lotus japonicus
RBPs
123 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
Glyma15g41960.1
Glycine max
Glyma15g41960.1
N
0.956
Glyma08g17240.1
Glycine max
Glyma08g17240.1
N
0.956
Medtr2g085380
Medicago truncatula
Medtr2g085380
N
0.934
GSVIVG00036696001
Vitis vinifera
GSVIVG00036696001
N
0.912
ppa003664m
Prunus persica
ppa003664m
N
0.912
MDP0000286471
Malus x domestica
MDP0000286471
N
0.890
MDP0000171737
Malus x domestica
MDP0000171737
N
0.890
MDP0000231231
Malus x domestica
MDP0000231231
N
0.890
B9HI18_POPTR
Populus trichocarpa
POPTR_0008s08030
N
0.890
29955.m001158
Ricinus communis
29955.m001158
N
0.890
cassava17772.valid.m1
Manihot esculenta
cassava17772.valid.m1
N
0.879
cassava17771.valid.m1
Manihot esculenta
cassava17771.valid.m1
N
0.879
B9HYD4_POPTR
Populus trichocarpa
POPTR_0010s18300
N
0.879
LOC_Os01g48790
Oryza sativa
LOC_Os01g48790
N
0.868
BGIOSIBCE003171
Oryza indica
BGIOSIBCE003171
N
0.868
ECT8
Arabidopsis thaliana
AT1G79270-TAIR-G
N
0.868
XM_002887730.1
Arabidopsis lyrata
fgenesh2_kg.2__2224__AT1G79270.1
N
0.857
BRADI2G46590
Brachypodium distachyon
BRADI2G46590
N
0.857
PK23104.1
Cannabis sativa
PK23104.1
N
0.846
GRMZM2G169116
Zea mays
GRMZM2G169116
N
0.846
GRMZM2G127780
Zea mays
GRMZM2G127780
N
0.846
SB03G031190
Sorghum bicolor
Sb03g031190
N
0.846
PDK_20s1631851g001
Phoenix dactylifera
PDK_20s1631851g001
N
0.824
MDP0000405927
Malus x domestica
MDP0000405927
N
0.813
MDP0000287088
Malus x domestica
MDP0000287088
N
0.813
MDP0000617859
Malus x domestica
MDP0000617859
N
0.813
GSVIVG00017649001
Vitis vinifera
GSVIVG00017649001
N
0.802
B9N5D4_POPTR
Populus trichocarpa
POPTR_0014s00320
N
0.802
Glyma08g24210.1
Glycine max
Glyma08g24210.1
N
0.802
GRMZM2G442195
Zea mays
GRMZM2G442195
N
0.802
MDP0000552419
Malus x domestica
MDP0000552419
N
0.802
MDP0000248088
Malus x domestica
MDP0000248088
N
0.802
Glyma07g00280.1
Glycine max
Glyma07g00280.1
N
0.802
gw1.181.55.1
Physcomitrella patens
gw1.181.55.1
N
0.802
Medtr8g134440
Medicago truncatula
Medtr8g134440
N
0.791
cassava1917.valid.m1
Manihot esculenta
cassava1917.valid.m1
N
0.791
XM_002882758.1
Arabidopsis lyrata
fgenesh2_kg.3__1376__AT3G13060.2
N
0.791
Medtr4g163280
Medicago truncatula
Medtr4g163280
N
0.791
cassava1918.valid.m1
Manihot esculenta
cassava1918.valid.m1
N
0.791
cassava1916.valid.m1
Manihot esculenta
cassava1916.valid.m1
N
0.791
SB07G006330
Sorghum bicolor
Sb07g006330
N
0.791
Medtr2g036990
Medicago truncatula
Medtr2g036990
N
0.791
Glyma17g04270.1
Glycine max
Glyma17g04270.1
N
0.791
B9HG69_POPTR
Populus trichocarpa
POPTR_0007s15150
N
0.791
PK02315.1
Cannabis sativa
PK02315.1
N
0.791
ppa002483m
Prunus persica
ppa002483m
N
0.791
ECT5
Arabidopsis thaliana
AT3G13060-TAIR-G
N
0.791
ppa002588m
Prunus persica
ppa002588m
N
0.791
cassava42992.valid.m1
Manihot esculenta
cassava42992.valid.m1
N
0.780
LOC_Os08g12760
Oryza sativa
LOC_Os08g12760
N
0.780
B9GMK5_POPTR
Populus trichocarpa
POPTR_0001s13870
N
0.780
cassava42993.valid.m1
Manihot esculenta
cassava42993.valid.m1
N
0.780
cassava6538.valid.m1
Manihot esculenta
cassava6538.valid.m1
N
0.780
BGIOSIBCE026930
Oryza indica
BGIOSIBCE026930
N
0.780
PK26094.1
Cannabis sativa
PK26094.1
N
0.780
GSVIVG00029460001
Vitis vinifera
GSVIVG00029460001
N
0.780
29889.m003364
Ricinus communis
29889.m003364
N
0.780
gw1.198.66.1
Physcomitrella patens
gw1.198.66.1
N
0.780
cassava12061.valid.m1
Manihot esculenta
cassava12061.valid.m1
N
0.769
ppa018635m
Prunus persica
ppa018635m
N
0.769
SB07G024500
Sorghum bicolor
Sb07g024500
N
0.769
29929.m004643
Ricinus communis
29929.m004643
N
0.769
PK17832.1
Cannabis sativa
PK17832.1
N
0.769
Glyma07g36110.1
Glycine max
Glyma07g36110.1
N
0.769
B9HII9_POPTR
Populus trichocarpa
POPTR_0008s09960
N
0.769
BRADI3G18190
Brachypodium distachyon
BRADI3G18190
N
0.769
GSVIVG00010494001
Vitis vinifera
GSVIVG00010494001
N
0.769
LOC_Os04g51940
Oryza sativa
LOC_Os04g51940
N
0.769
GRMZM2G025488
Zea mays
GRMZM2G025488
N
0.769
chr6.LjT36O06.80.nd
Lotus japonicus
chr6.LjT36O06.80.nd
N
0.769
chr3.CM0292.380.nc
Lotus japonicus
chr3.CM0292.380.nc
N
0.769
Glyma09g03590.1
Glycine max
Glyma09g03590.1
N
0.769
PDK_20s1352821g002
Phoenix dactylifera
PDK_20s1352821g002
N
0.769
gw1.1.157.1
Selaginella moellendorfii
gw1.1.157.1
N
0.758
Glyma15g14490.1
Glycine max
Glyma15g14490.1
N
0.758
MDP0000256033
Malus x domestica
MDP0000256033
N
0.758
MDP0000488248
Malus x domestica
MDP0000488248
N
0.758
MDP0000132385
Malus x domestica
MDP0000132385
N
0.758
Cucsa.135220
Cucumis sativus
Cucsa.135220
N
0.758
LOC_Os08g44200
Oryza sativa
LOC_Os08g44200
N
0.758
PK01736.1
Cannabis sativa
PK01736.1
N
0.758
BGIOSIBCE028829
Oryza indica
BGIOSIBCE028829
N
0.758
B9HX84_POPTR
Populus trichocarpa
POPTR_0010s16210
N
0.758
MDP0000306387
Malus x domestica
MDP0000306387
N
0.758
mgf017987m
Mimulus guttatus
mgf017987m
N
0.747
mgf015583m
Mimulus guttatus
mgf015583m
N
0.747
mgf019846m
Mimulus guttatus
mgf019846m
N
0.747
mgf014143m
Mimulus guttatus
mgf014143m
N
0.747
mgf014829m
Mimulus guttatus
mgf014829m
N
0.747
mgf001716m
Mimulus guttatus
mgf001716m
N
0.747
29765.m000746
Ricinus communis
29765.m000746
N
0.747
B9N817_POPTR
Populus trichocarpa
POPTR_0018s14670
N
0.736
ppa003557m
Prunus persica
ppa003557m
N
0.736
mgf019821m
Mimulus guttatus
mgf019821m
N
0.725
cassava14932.m1
Manihot esculenta
cassava14932.m1
N
0.725
GSVIVG00023248001
Vitis vinifera
GSVIVG00023248001
N
0.725
cassava13322.valid.m1
Manihot esculenta
cassava13322.valid.m1
N
0.725
GSVIVG00033395001
Vitis vinifera
GSVIVG00033395001
N
0.725
BGIOSIBCE016517
Oryza indica
BGIOSIBCE016517
N
0.725
BGIOSIBCE010884
Oryza indica
BGIOSIBCE010884
N
0.725
cassava13323.valid.m1
Manihot esculenta
cassava13323.valid.m1
N
0.725
BRADI3G42640
Brachypodium distachyon
BRADI3G42640
N
0.725
XM_002885156.1
Arabidopsis lyrata
Al_scaffold_0003_1823
N
0.725
LOC_Os03g20180
Oryza sativa
LOC_Os03g20180
N
0.725
B9N0D5_POPTR
Populus trichocarpa
POPTR_0004s23250
N
0.725
cassava13324.valid.m1
Manihot esculenta
cassava13324.valid.m1
N
0.725
PDK_20s1308332g001
Phoenix dactylifera
PDK_20s1308332g001
N
0.714
B9N770_POPTR
Populus trichocarpa
POPTR_0022s00680
N
0.714
ECT6
Arabidopsis thaliana
AT3G17330-TAIR-G
N
0.714
ECT7
Arabidopsis thaliana
AT1G48110-TAIR-G
N
0.714
PK05579.1
Cannabis sativa
PK05579.1
N
0.714
Cucsa.356240
Cucumis sativus
Cucsa.356240
N
0.714
XM_002894050.1
Arabidopsis lyrata
fgenesh2_kg.1__3903__AT1G48110.2
N
0.714
SB06G027960
Sorghum bicolor
Sb06g027960
N
0.714
LOC_Os03g53670
Oryza sativa
LOC_Os03g53670
N
0.703
BRADI1G64100
Brachypodium distachyon
BRADI1G64100
N
0.703
SB01G008170
Sorghum bicolor
Sb01g008170
N
0.703
29890.m000285
Ricinus communis
29890.m000285
N
0.703
ppa002677m
Prunus persica
ppa002677m
N
0.703
BGIOSIBCE017245
Oryza indica
BGIOSIBCE017245
N
0.703
GRMZM2G126338
Zea mays
GRMZM2G126338
N
0.703
LOC_Os05g01520
Oryza sativa
LOC_Os05g01520
N
0.703
PDK_20s1441394g001
Phoenix dactylifera
PDK_20s1441394g001
N
0.703