LjSGA_032005.1 (Lotus japonicus)
YTH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF04146 (YTH) IPR007275 LjSGA_032005.1 T62521_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
LjSGA_032005.1 YTH 162 252

Links

Other YTH family RBPs
Other Lotus japonicus RBPs

123 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Glyma15g41960.1 Glycine max Glyma15g41960.1 N 0.956
Glyma08g17240.1 Glycine max Glyma08g17240.1 N 0.956
Medtr2g085380 Medicago truncatula Medtr2g085380 N 0.934
GSVIVG00036696001 Vitis vinifera GSVIVG00036696001 N 0.912
ppa003664m Prunus persica ppa003664m N 0.912
MDP0000286471 Malus x domestica MDP0000286471 N 0.890
MDP0000171737 Malus x domestica MDP0000171737 N 0.890
MDP0000231231 Malus x domestica MDP0000231231 N 0.890
B9HI18_POPTR Populus trichocarpa POPTR_0008s08030 N 0.890
29955.m001158 Ricinus communis 29955.m001158 N 0.890
cassava17772.valid.m1 Manihot esculenta cassava17772.valid.m1 N 0.879
cassava17771.valid.m1 Manihot esculenta cassava17771.valid.m1 N 0.879
B9HYD4_POPTR Populus trichocarpa POPTR_0010s18300 N 0.879
LOC_Os01g48790 Oryza sativa LOC_Os01g48790 N 0.868
BGIOSIBCE003171 Oryza indica BGIOSIBCE003171 N 0.868
ECT8 Arabidopsis thaliana AT1G79270-TAIR-G N 0.868
XM_002887730.1 Arabidopsis lyrata fgenesh2_kg.2__2224__AT1G79270.1 N 0.857
BRADI2G46590 Brachypodium distachyon BRADI2G46590 N 0.857
PK23104.1 Cannabis sativa PK23104.1 N 0.846
GRMZM2G169116 Zea mays GRMZM2G169116 N 0.846
GRMZM2G127780 Zea mays GRMZM2G127780 N 0.846
SB03G031190 Sorghum bicolor Sb03g031190 N 0.846
PDK_20s1631851g001 Phoenix dactylifera PDK_20s1631851g001 N 0.824
MDP0000405927 Malus x domestica MDP0000405927 N 0.813
MDP0000287088 Malus x domestica MDP0000287088 N 0.813
MDP0000617859 Malus x domestica MDP0000617859 N 0.813
GSVIVG00017649001 Vitis vinifera GSVIVG00017649001 N 0.802
B9N5D4_POPTR Populus trichocarpa POPTR_0014s00320 N 0.802
Glyma08g24210.1 Glycine max Glyma08g24210.1 N 0.802
GRMZM2G442195 Zea mays GRMZM2G442195 N 0.802
MDP0000552419 Malus x domestica MDP0000552419 N 0.802
MDP0000248088 Malus x domestica MDP0000248088 N 0.802
Glyma07g00280.1 Glycine max Glyma07g00280.1 N 0.802
gw1.181.55.1 Physcomitrella patens gw1.181.55.1 N 0.802
Medtr8g134440 Medicago truncatula Medtr8g134440 N 0.791
cassava1917.valid.m1 Manihot esculenta cassava1917.valid.m1 N 0.791
XM_002882758.1 Arabidopsis lyrata fgenesh2_kg.3__1376__AT3G13060.2 N 0.791
Medtr4g163280 Medicago truncatula Medtr4g163280 N 0.791
cassava1918.valid.m1 Manihot esculenta cassava1918.valid.m1 N 0.791
cassava1916.valid.m1 Manihot esculenta cassava1916.valid.m1 N 0.791
SB07G006330 Sorghum bicolor Sb07g006330 N 0.791
Medtr2g036990 Medicago truncatula Medtr2g036990 N 0.791
Glyma17g04270.1 Glycine max Glyma17g04270.1 N 0.791
B9HG69_POPTR Populus trichocarpa POPTR_0007s15150 N 0.791
PK02315.1 Cannabis sativa PK02315.1 N 0.791
ppa002483m Prunus persica ppa002483m N 0.791
ECT5 Arabidopsis thaliana AT3G13060-TAIR-G N 0.791
ppa002588m Prunus persica ppa002588m N 0.791
cassava42992.valid.m1 Manihot esculenta cassava42992.valid.m1 N 0.780
LOC_Os08g12760 Oryza sativa LOC_Os08g12760 N 0.780
B9GMK5_POPTR Populus trichocarpa POPTR_0001s13870 N 0.780
cassava42993.valid.m1 Manihot esculenta cassava42993.valid.m1 N 0.780
cassava6538.valid.m1 Manihot esculenta cassava6538.valid.m1 N 0.780
BGIOSIBCE026930 Oryza indica BGIOSIBCE026930 N 0.780
PK26094.1 Cannabis sativa PK26094.1 N 0.780
GSVIVG00029460001 Vitis vinifera GSVIVG00029460001 N 0.780
29889.m003364 Ricinus communis 29889.m003364 N 0.780
gw1.198.66.1 Physcomitrella patens gw1.198.66.1 N 0.780
cassava12061.valid.m1 Manihot esculenta cassava12061.valid.m1 N 0.769
ppa018635m Prunus persica ppa018635m N 0.769
SB07G024500 Sorghum bicolor Sb07g024500 N 0.769
29929.m004643 Ricinus communis 29929.m004643 N 0.769
PK17832.1 Cannabis sativa PK17832.1 N 0.769
Glyma07g36110.1 Glycine max Glyma07g36110.1 N 0.769
B9HII9_POPTR Populus trichocarpa POPTR_0008s09960 N 0.769
BRADI3G18190 Brachypodium distachyon BRADI3G18190 N 0.769
GSVIVG00010494001 Vitis vinifera GSVIVG00010494001 N 0.769
LOC_Os04g51940 Oryza sativa LOC_Os04g51940 N 0.769
GRMZM2G025488 Zea mays GRMZM2G025488 N 0.769
chr6.LjT36O06.80.nd Lotus japonicus chr6.LjT36O06.80.nd N 0.769
chr3.CM0292.380.nc Lotus japonicus chr3.CM0292.380.nc N 0.769
Glyma09g03590.1 Glycine max Glyma09g03590.1 N 0.769
PDK_20s1352821g002 Phoenix dactylifera PDK_20s1352821g002 N 0.769
gw1.1.157.1 Selaginella moellendorfii gw1.1.157.1 N 0.758
Glyma15g14490.1 Glycine max Glyma15g14490.1 N 0.758
MDP0000256033 Malus x domestica MDP0000256033 N 0.758
MDP0000488248 Malus x domestica MDP0000488248 N 0.758
MDP0000132385 Malus x domestica MDP0000132385 N 0.758
Cucsa.135220 Cucumis sativus Cucsa.135220 N 0.758
LOC_Os08g44200 Oryza sativa LOC_Os08g44200 N 0.758
PK01736.1 Cannabis sativa PK01736.1 N 0.758
BGIOSIBCE028829 Oryza indica BGIOSIBCE028829 N 0.758
B9HX84_POPTR Populus trichocarpa POPTR_0010s16210 N 0.758
MDP0000306387 Malus x domestica MDP0000306387 N 0.758
mgf017987m Mimulus guttatus mgf017987m N 0.747
mgf015583m Mimulus guttatus mgf015583m N 0.747
mgf019846m Mimulus guttatus mgf019846m N 0.747
mgf014143m Mimulus guttatus mgf014143m N 0.747
mgf014829m Mimulus guttatus mgf014829m N 0.747
mgf001716m Mimulus guttatus mgf001716m N 0.747
29765.m000746 Ricinus communis 29765.m000746 N 0.747
B9N817_POPTR Populus trichocarpa POPTR_0018s14670 N 0.736
ppa003557m Prunus persica ppa003557m N 0.736
mgf019821m Mimulus guttatus mgf019821m N 0.725
cassava14932.m1 Manihot esculenta cassava14932.m1 N 0.725
GSVIVG00023248001 Vitis vinifera GSVIVG00023248001 N 0.725
cassava13322.valid.m1 Manihot esculenta cassava13322.valid.m1 N 0.725
GSVIVG00033395001 Vitis vinifera GSVIVG00033395001 N 0.725
BGIOSIBCE016517 Oryza indica BGIOSIBCE016517 N 0.725
BGIOSIBCE010884 Oryza indica BGIOSIBCE010884 N 0.725
cassava13323.valid.m1 Manihot esculenta cassava13323.valid.m1 N 0.725
BRADI3G42640 Brachypodium distachyon BRADI3G42640 N 0.725
XM_002885156.1 Arabidopsis lyrata Al_scaffold_0003_1823 N 0.725
LOC_Os03g20180 Oryza sativa LOC_Os03g20180 N 0.725
B9N0D5_POPTR Populus trichocarpa POPTR_0004s23250 N 0.725
cassava13324.valid.m1 Manihot esculenta cassava13324.valid.m1 N 0.725
PDK_20s1308332g001 Phoenix dactylifera PDK_20s1308332g001 N 0.714
B9N770_POPTR Populus trichocarpa POPTR_0022s00680 N 0.714
ECT6 Arabidopsis thaliana AT3G17330-TAIR-G N 0.714
ECT7 Arabidopsis thaliana AT1G48110-TAIR-G N 0.714
PK05579.1 Cannabis sativa PK05579.1 N 0.714
Cucsa.356240 Cucumis sativus Cucsa.356240 N 0.714
XM_002894050.1 Arabidopsis lyrata fgenesh2_kg.1__3903__AT1G48110.2 N 0.714
SB06G027960 Sorghum bicolor Sb06g027960 N 0.714
LOC_Os03g53670 Oryza sativa LOC_Os03g53670 N 0.703
BRADI1G64100 Brachypodium distachyon BRADI1G64100 N 0.703
SB01G008170 Sorghum bicolor Sb01g008170 N 0.703
29890.m000285 Ricinus communis 29890.m000285 N 0.703
ppa002677m Prunus persica ppa002677m N 0.703
BGIOSIBCE017245 Oryza indica BGIOSIBCE017245 N 0.703
GRMZM2G126338 Zea mays GRMZM2G126338 N 0.703
LOC_Os05g01520 Oryza sativa LOC_Os05g01520 N 0.703
PDK_20s1441394g001 Phoenix dactylifera PDK_20s1441394g001 N 0.703