MDP0000243086 (Malus x domestica)
CCCH ZF,RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH)
PF00076 (RRM_1) 		IPR000571
IPR000504 		MDP0000243086 T01102_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
MDP0000243086 CCCH ZF 229 250
MDP0000243086 RRM 372 431

Links

Other CCCH ZF,RRM family RBPs
Other Malus x domestica RBPs

77 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
30169.m006471 Ricinus communis 30169.m006471 N 0.940
30169.m006472 Ricinus communis 30169.m006472 N 0.753
AT3G51950 Arabidopsis thaliana AT3G51950-TAIR-G N 0.816
AT5G12440 Arabidopsis thaliana AT5G12440-TAIR-G N 0.723
BGIOSIBCE010969 Oryza indica BGIOSIBCE010969 N 0.904
BGIOSIBCE010970 Oryza indica BGIOSIBCE010970 N 0.902
BGIOSIBCE026070 Oryza indica BGIOSIBCE026070 N 0.915
BRADI1G17510 Brachypodium distachyon BRADI1G17510 N 0.878
BRADI1G63570 Brachypodium distachyon BRADI1G63570 N 0.843
BRADI4G44040 Brachypodium distachyon BRADI4G44040 N 0.878
cassava2158.valid.m1 Manihot esculenta cassava2158.valid.m1 N 0.908
cassava2159.valid.m1 Manihot esculenta cassava2159.valid.m1 N 0.765
cassava30651.valid.m1 Manihot esculenta cassava30651.valid.m1 N 0.940
cassava30652.valid.m1 Manihot esculenta cassava30652.valid.m1 N 0.940
cassava34046.m1 Manihot esculenta cassava34046.m1 N 0.735
cassava7063.valid.m1 Manihot esculenta cassava7063.valid.m1 N 0.000
cassava7292.valid.m1 Manihot esculenta cassava7292.valid.m1 N 0.902
cassava7293.valid.m1 Manihot esculenta cassava7293.valid.m1 N 0.902
cassava7294.valid.m1 Manihot esculenta cassava7294.valid.m1 N 0.902
cassava9561.m1 Manihot esculenta cassava9561.m1 N 0.902
chr2.CM0018.150.nc Lotus japonicus chr2.CM0018.150.nc N 0.767
Cucsa.166080 Cucumis sativus Cucsa.166080 N 0.939
Cucsa.333940 Cucumis sativus Cucsa.333940 N 0.791
XM_002873527.1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_6000986 N 0.723
XM_002877790.1 Arabidopsis lyrata fgenesh2_kg.5__1545__AT3G51950.1 N 0.816
Glyma01g43700.1 Glycine max Glyma01g43700.1 N 0.782
Glyma09g35980.1 Glycine max Glyma09g35980.1 N 0.963
Glyma09g35990.1 Glycine max Glyma09g35990.1 N 0.963
Glyma11g01780.1 Glycine max Glyma11g01780.1 N 0.782
Glyma12g01340.1 Glycine max Glyma12g01340.1 N 0.963
Glyma12g01350.1 Glycine max Glyma12g01350.1 N 0.963
GRMZM2G003424 Zea mays GRMZM2G003424 N 0.915
GRMZM2G044004 Zea mays GRMZM2G044004 N 0.867
GRMZM2G086614 Zea mays GRMZM2G086614 N 0.915
GRMZM2G132749 Zea mays GRMZM2G132749 N 0.771
GRMZM2G311665 Zea mays GRMZM2G311665 N 0.915
GRMZM2G346113 Zea mays GRMZM2G346113 N 0.855
GRMZM2G368883 Zea mays GRMZM2G368883 N 0.880
GSVIVG00001467001 Vitis vinifera GSVIVG00001467001 N 0.963
GSVIVG00031538001 Vitis vinifera GSVIVG00031538001 N 0.904
LjT28K11.10.nd Lotus japonicus LjT28K11.10.nd N 0.940
LOC_Os03g21140 Oryza sativa LOC_Os03g21140 N 0.904
LOC_Os03g21160 Oryza sativa LOC_Os03g21160 N 0.902
LOC_Os07g48410 Oryza sativa LOC_Os07g48410 N 0.915
MDP0000120231 Malus x domestica MDP0000120231 N 0.880
MDP0000120462 Malus x domestica MDP0000120462 N 0.867
MDP0000164538 Malus x domestica MDP0000164538 N 0.788
MDP0000214614 Malus x domestica MDP0000214614 N 0.706
MDP0000220601 Malus x domestica MDP0000220601 N 0.940
MDP0000256775 Malus x domestica MDP0000256775 N 0.916
MDP0000259773 Malus x domestica MDP0000259773 N 0.916
Medtr4g118330 Medicago truncatula Medtr4g118330 N 0.880
Medtr5g008940 Medicago truncatula Medtr5g008940 N 0.747
mgf002273m Mimulus guttatus mgf002273m N 0.800
mgf014647m Mimulus guttatus mgf014647m N 0.867
PK18074.1 Cannabis sativa PK18074.1 N 0.765
PK20504.1 Cannabis sativa PK20504.1 N 0.718
POPTR_0001s05760 Populus trichocarpa POPTR_0001s05760 N 0.915
B9GI28_POPTR Populus trichocarpa POPTR_0001s26240 N 0.756
B9GI27_POPTR Populus trichocarpa POPTR_0001s26250 N 0.867
B9GWA9_POPTR Populus trichocarpa POPTR_0003s20310 N 0.927
XM_002313318.1 Populus trichocarpa POPTR_0009s05510 N 0.756
B9HNZ4_POPTR Populus trichocarpa POPTR_0009s05520 N 0.845
B9IAR9_POPTR Populus trichocarpa POPTR_0014s16340 N 0.000
ppa002383m Prunus persica ppa002383m N 0.800
ppa002413m Prunus persica ppa002413m N 0.880
ppa003564m Prunus persica ppa003564m N 0.706
ppa023263m Prunus persica ppa023263m N 0.976
SB01G036490 Sorghum bicolor Sb01g036490 N 0.915
SB02G043180 Sorghum bicolor Sb02g043180 N 0.915
SB05G001540 Sorghum bicolor Sb05g001540 N 0.843
SB08G001980 Sorghum bicolor Sb08g001980 N 0.867