AT2G47850 (Arabidopsis thaliana)
CCCH ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH) IPR000571 AT2G47850-TAIR-G T01896_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
AT2G47850.1-P CCCH ZF 46 72
AT2G47850.1-P CCCH ZF 91 117
AT2G47850.1-P CCCH ZF 138 163
AT2G47850.1-P CCCH ZF 290 316
AT2G47850.1-P CCCH ZF 336 362
AT2G47850.2-P CCCH ZF 46 72
AT2G47850.2-P CCCH ZF 91 117
AT2G47850.2-P CCCH ZF 264 290
AT2G47850.2-P CCCH ZF 310 336
AT2G47850.3-P CCCH ZF 46 72
AT2G47850.3-P CCCH ZF 91 117
AT2G47850.3-P CCCH ZF 138 163
AT2G47850.3-P CCCH ZF 290 316
AT2G47850.3-P CCCH ZF 336 362

Links

Other CCCH ZF family RBPs
Other Arabidopsis thaliana RBPs

45 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
30128.m009030 Ricinus communis 30128.m009030 N 0.719
ZFN1 Arabidopsis thaliana AT3G02830-TAIR-G N 0.000
ZFN3 Arabidopsis thaliana AT5G16540-TAIR-G N 0.000
BGIOSIBCE004747 Oryza indica BGIOSIBCE004747 N 0.000
BGIOSIBCE034418 Oryza indica BGIOSIBCE034418 N 0.000
BGIOSIBCE036312 Oryza indica BGIOSIBCE036312 N 0.000
BRADI2G58770 Brachypodium distachyon BRADI2G58770 N 0.000
BRADI4G08050 Brachypodium distachyon BRADI4G08050 N 0.000
BRADI4G19010 Brachypodium distachyon BRADI4G19010 N 0.000
cassava12889.valid.m1 Manihot esculenta cassava12889.valid.m1 N 0.709
cassava12890.valid.m1 Manihot esculenta cassava12890.valid.m1 N 0.709
cassava17662.valid.m1 Manihot esculenta cassava17662.valid.m1 N 0.719
cassava29576.valid.m1 Manihot esculenta cassava29576.valid.m1 N 0.859
chr1.CM1413.200.nd Lotus japonicus chr1.CM1413.200.nd N 0.704
XM_002882207.1 Arabidopsis lyrata fgenesh2_kg.3__226__AT3G02830.1 N 0.000
XM_002871677.1 Arabidopsis lyrata fgenesh2_kg.6__1644__AT5G16540.1 N 0.000
Glyma09g38650.1 Glycine max Glyma09g38650.1 N 0.000
Glyma10g31370.1 Glycine max Glyma10g31370.1 N 0.719
Glyma18g47660.1 Glycine max Glyma18g47660.1 N 0.000
Glyma20g36140.1 Glycine max Glyma20g36140.1 N 0.711
GRMZM2G087032 Zea mays GRMZM2G087032 N 0.000
GRMZM2G100794 Zea mays GRMZM2G100794 N 0.701
GRMZM2G107491 Zea mays GRMZM2G107491 N 0.704
GRMZM2G146514 Zea mays GRMZM2G146514 N 0.000
GSVIVG00019119001 Vitis vinifera GSVIVG00019119001 N 0.000
gw1.102.25.1 Physcomitrella patens gw1.102.25.1 N 0.704
gw1.151.82.1 Selaginella moellendorfii gw1.151.82.1 N 0.000
LOC_Os01g68860 Oryza sativa LOC_Os01g68860 N 0.000
LOC_Os11g28270 Oryza sativa LOC_Os11g28270 N 0.704
LOC_Os12g21700 Oryza sativa LOC_Os12g21700 N 0.000
MDP0000178517 Malus x domestica MDP0000178517 N 0.000
Medtr7g089530 Medicago truncatula Medtr7g089530 N 0.000
mgf007299m Mimulus guttatus mgf007299m N 0.000
PK23881.1 Cannabis sativa PK23881.1 N 0.000
ppa005813m Prunus persica ppa005813m N 0.000
SB05G013190 Sorghum bicolor Sb05g013190 N 0.709