ENSBTAG00000006133 (Bos taurus)
CSD

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00313 (CSD) IPR002059 ENSBTAG00000006133 T16754_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
YB-1
M111_0.6 		Homo sapiens AACAUCD RNAcompete
Ray et al.(2013)
RNCMPT00116 		0.972
YB-1
M081_0.6 		Homo sapiens AACAUC RNAcompete
Ray et al.(2013)
RNCMPT00083 		0.972
ybx2-a
M260_0.6 		Xenopus laevis GCCANACCAYCGC SELEX
Cook et al.(2011)
130_11376140 		0.903
ybx2-a
M254_0.6 		Xenopus laevis KAACAUCU SELEX
Cook et al.(2011)
115_7499328 		0.903
ybx2-a
M250_0.6 		Xenopus laevis UAACAUC SELEX
Cook et al.(2011)
114_7499328 		0.903
YBX2
M082_0.6 		Homo sapiens AACAWCD RNAcompete
Ray et al.(2013)
RNCMPT00084 		0.889
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSBTAP00000040267 CSD 58 127

Links

Other CSD family RBPs
Other Bos taurus RBPs

198 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
AB03863.1 Alternaria brassicicola AB03863.1 N 0.000
An08g00930 Aspergillus niger CADANGAG00006412 N 0.000
CPIJ002557 Culex quinquefasciatus CPIJ002557 N 0.000
CpipJ_CPIJ002557 Culex pipiens CpipJ_CPIJ002557 N 0.000
EAT87800.2 Phaeosphaeria nodorum EAT87800.2 N 0.000
GA18942-RA Drosophila pseudoobscura FBgn0078941 N 0.000
FVEG_02700 Fusarium verticillioides FVEG_02700 N 0.000
GSTUMT00003933001 Tuber melanosporum GSTUMT00003933001 N 0.000
LjT04A22.90.nc Lotus japonicus LjT04A22.90.nc N 0.000
nasonia_NCBI_hmm378444 Nasonia vitripennis nasonia_NCBI_hmm378444 N 0.000
NCU01017 Neurospora crassa NCU01017 N 0.000
PTRG_04194 Pyrenophora tritici repentis PTRG_04194 N 0.000
SNOG_05409 Stagonospora nodorum SNOG_05409 N 0.000