Bm1_16080 (Brugia malayi)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 Bm1_16080 T28357_0.6 Broad (2011-Oct-27)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
PABPC1
M349_0.6 		Homo sapiens ACDAAYM SELEX
Cook et al.(2011)
950_7908267 		0.711
PABPC1
M275_0.6 		Homo sapiens AAAAA SELEX
Cook et al.(2011)
24_7908267 		0.711
PABPC1
M146_0.6 		Homo sapiens ARAAAAM RNAcompete
Ray et al.(2013)
RNCMPT00155 		0.711
PABPC4
M042_0.6 		Homo sapiens AAAAAAR RNAcompete
Ray et al.(2013)
RNCMPT00043 		0.708
pAbp
M130_0.6 		Drosophila melanogaster GAAAAHV RNAcompete
Ray et al.(2013)
RNCMPT00139 		0.705
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
Bm1_16080 RRM 20 90
Bm1_16080 RRM 108 177
Bm1_16080 RRM 201 270
Bm1_16080 RRM 306 375

Links

Other RRM family RBPs
Other Brugia malayi RBPs

78 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
27613.m000635 Ricinus communis 27613.m000635 N 0.000
30008.m000830 Ricinus communis 30008.m000830 N 0.000
AC198361.3_FG004 Zea mays AC198361.3_FG004 N 0.000
AT5G55550 Arabidopsis thaliana AT5G55550-TAIR-G N 0.000
BRADI3G28430 Brachypodium distachyon BRADI3G28430 N 0.000
cassava12598.valid.m1 Manihot esculenta cassava12598.valid.m1 N 0.000
cassava12599.valid.m1 Manihot esculenta cassava12599.valid.m1 N 0.000
cassava12600.valid.m1 Manihot esculenta cassava12600.valid.m1 N 0.000
cassava12601.valid.m1 Manihot esculenta cassava12601.valid.m1 N 0.000
cassava31392.valid.m1 Manihot esculenta cassava31392.valid.m1 N 0.000
cassava7388.valid.m1 Manihot esculenta cassava7388.valid.m1 N 0.000
chr2.LjT48A12.20.nd Lotus japonicus chr2.LjT48A12.20.nd N 0.000
Cucsa.383370 Cucumis sativus Cucsa.383370 N 0.000
XM_002870277.1 Arabidopsis lyrata fgenesh2_kg.7__2913__AT4G14300.1 N 0.000
XM_002862650.1 Arabidopsis lyrata fgenesh2_kg.8__1457__AT5G55550.1 N 0.000
Glyma02g46650.1 Glycine max Glyma02g46650.1 N 0.000
Glyma08g43740.1 Glycine max Glyma08g43740.1 N 0.000
Glyma10g33320.1 Glycine max Glyma10g33320.1 N 0.000
Glyma14g02020.1 Glycine max Glyma14g02020.1 N 0.000
Glyma18g09090.1 Glycine max Glyma18g09090.1 N 0.000
Glyma20g34330.1 Glycine max Glyma20g34330.1 N 0.000
GRMZM2G013065 Zea mays GRMZM2G013065 N 0.000
GRMZM2G167505 Zea mays GRMZM2G167505 N 0.000
GRMZM2G176918 Zea mays GRMZM2G176918 N 0.000
GSVIVG00027891001 Vitis vinifera GSVIVG00027891001 N 0.000
GSVIVG00028394001 Vitis vinifera GSVIVG00028394001 N 0.000
gw1.3.93.1 Selaginella moellendorfii gw1.3.93.1 N 0.000
LOC_Os10g33230 Oryza sativa LOC_Os10g33230 N 0.000
MDP0000130865 Malus x domestica MDP0000130865 N 0.000
MDP0000173934 Malus x domestica MDP0000173934 N 0.000
MDP0000217366 Malus x domestica MDP0000217366 N 0.000
MDP0000286430 Malus x domestica MDP0000286430 N 0.000
MDP0000320618 Malus x domestica MDP0000320618 N 0.000
MDP0000320861 Malus x domestica MDP0000320861 N 0.000
MDP0000642684 Malus x domestica MDP0000642684 N 0.000
MDP0000907782 Malus x domestica MDP0000907782 N 0.000
Medtr3g076980 Medicago truncatula Medtr3g076980 N 0.000
Medtr5g105300 Medicago truncatula Medtr5g105300 N 0.000
PK00513.1 Cannabis sativa PK00513.1 N 0.000
B9GTG8_POPTR Populus trichocarpa POPTR_0002s22120 N 0.000
B9GRF1_POPTR Populus trichocarpa POPTR_0002s26030 N 0.000
B9HKT4_POPTR Populus trichocarpa POPTR_0008s17030 N 0.000
B9HSS5_POPTR Populus trichocarpa POPTR_0010s07790 N 0.000
B9IBE6_POPTR Populus trichocarpa POPTR_0014s18470 N 0.000
ppa005119m Prunus persica ppa005119m N 0.000
ppa005132m Prunus persica ppa005132m N 0.000
ppa005309m Prunus persica ppa005309m N 0.000
ppa005979m Prunus persica ppa005979m N 0.000
Sb01g019610 Sorghum bicolor Sb01g019610 N 0.000
SB02G005620 Sorghum bicolor Sb02g005620 N 0.000
SB02G005670 Sorghum bicolor Sb02g005670 N 0.000